Wall clock time and date at job start Tue Mar 31 2020 19:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.58521 * 2 1 4 4 C 1.53194 * 109.58623 * 239.71537 * 2 1 3 5 5 H 1.09000 * 109.49511 * 65.59554 * 4 2 1 6 6 N 1.46493 * 109.50010 * 305.52871 * 4 2 1 7 7 C 1.34773 * 120.00056 * 155.00124 * 6 4 2 8 8 O 1.21681 * 120.00228 * 359.97438 * 7 6 4 9 9 C 1.46688 * 120.00067 * 180.02562 * 7 6 4 10 10 S 1.76212 * 126.12900 * 0.13268 * 9 7 6 11 11 C 1.70953 * 90.31460 * 180.20494 * 10 9 7 12 12 N 1.29432 * 110.39014 * 359.81011 * 11 10 9 13 13 C 1.30939 * 117.36425 * 0.02562 * 12 11 10 14 14 C 1.50703 * 122.90641 * 180.02562 * 13 12 11 15 15 C 1.53004 * 117.49359 * 300.01767 * 14 13 12 16 16 C 1.53007 * 60.02838 * 107.50044 * 15 14 13 17 17 C 1.53038 * 109.31082 * 185.57481 * 4 2 1 18 18 C 1.53046 * 109.53732 * 61.36994 * 17 4 2 19 19 C 1.53198 * 109.31003 * 298.63178 * 18 17 4 20 20 N 1.46923 * 109.58547 * 120.42740 * 2 1 3 21 21 C 1.36938 * 120.62968 * 353.37206 * 20 2 1 22 22 H 1.07995 * 120.00058 * 41.20583 * 21 20 2 23 23 C 1.38810 * 119.99890 * 221.20468 * 21 20 2 24 24 N 1.31620 * 120.00146 * 214.89182 * 23 21 20 25 25 Si 1.86800 * 120.00323 * 34.88965 * 23 21 20 26 26 H 1.48498 * 109.46911 * 84.62155 * 25 23 21 27 27 H 1.48493 * 109.47589 * 204.62553 * 25 23 21 28 28 H 1.48509 * 109.47047 * 324.62522 * 25 23 21 29 29 H 1.08997 * 109.46876 * 180.27764 * 1 2 3 30 30 H 1.08993 * 109.47447 * 300.28568 * 1 2 3 31 31 H 1.09002 * 109.46568 * 60.28662 * 1 2 3 32 32 H 0.97001 * 119.99723 * 335.00526 * 6 4 2 33 33 H 1.08000 * 124.80563 * 179.79212 * 11 10 9 34 34 H 1.09000 * 115.56167 * 154.33145 * 14 13 12 35 35 H 1.08995 * 117.50193 * 0.02562 * 15 14 13 36 36 H 1.09003 * 117.49928 * 215.00045 * 15 14 13 37 37 H 1.09005 * 117.49421 * 107.47232 * 16 15 14 38 38 H 1.08999 * 117.49707 * 252.47352 * 16 15 14 39 39 H 1.08998 * 109.46077 * 181.38470 * 17 4 2 40 40 H 1.08994 * 109.46416 * 301.34632 * 17 4 2 41 41 H 1.09000 * 109.49620 * 178.68684 * 18 17 4 42 42 H 1.09000 * 109.52384 * 58.59596 * 18 17 4 43 43 H 1.08998 * 109.58702 * 294.85014 * 19 18 17 44 44 H 1.08997 * 109.58529 * 174.42272 * 19 18 17 45 45 H 0.97004 * 120.00156 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2463 5 1 1.7656 -0.1644 -2.1370 6 7 1.4515 -2.0663 -1.3097 7 6 1.3285 -2.6932 -2.4964 8 8 1.7089 -2.1474 -3.5152 9 6 0.7351 -4.0332 -2.5599 10 16 0.1294 -4.9671 -1.1939 11 6 -0.2955 -6.2466 -2.2450 12 7 0.0041 -5.9446 -3.4674 13 6 0.5524 -4.7748 -3.6812 14 6 0.9504 -4.2957 -5.0535 15 6 1.9803 -5.1273 -5.8208 16 6 0.5123 -5.1410 -6.2521 17 6 3.5675 -0.8465 -1.1712 18 6 3.9570 -1.6658 0.0614 19 6 3.4651 -0.9486 1.3226 20 7 2.0225 -0.7010 1.1936 21 6 1.1537 -1.1154 2.1675 22 1 0.2056 -1.5544 1.8942 23 6 1.4916 -0.9710 3.5061 24 7 1.1108 -1.8764 4.3823 25 14 2.4868 0.5080 4.0641 26 1 1.5750 1.6541 4.3095 27 1 3.2102 0.1738 5.3171 28 1 3.4665 0.8720 3.0090 29 1 -0.3633 -1.0276 0.0050 30 1 -0.3634 0.5182 0.8873 31 1 -0.3632 0.5094 -0.8926 32 1 1.1479 -2.5012 -0.4976 33 1 -0.7495 -7.1757 -1.9332 34 1 0.9788 -3.2139 -5.1840 35 1 2.3696 -6.0210 -5.3333 36 1 2.6865 -4.5925 -6.4560 37 1 0.2528 -4.6148 -7.1708 38 1 -0.0636 -6.0437 -6.0484 39 1 3.9378 -1.3422 -2.0685 40 1 4.0061 0.1487 -1.0991 41 1 5.0413 -1.7696 0.1015 42 1 3.4988 -2.6530 0.0022 43 1 3.9903 0.0003 1.4317 44 1 3.6518 -1.5745 2.1952 45 1 1.3466 -1.7753 5.3178 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993965020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:35 Heat of formation + Delta-G solvation = 43.303188 kcal Electronic energy + Delta-G solvation = -27679.087750 eV Core-core repulsion = 24017.264654 eV Total energy + Delta-G solvation = -3661.823096 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.62878 -40.75235 -39.06266 -37.41945 -35.59988 -34.23658 -33.50104 -32.29873 -31.10485 -28.10363 -27.08663 -26.61721 -24.39429 -23.74522 -23.23053 -22.84693 -22.25444 -20.50478 -20.48079 -19.05977 -18.41147 -17.91461 -17.19648 -16.83302 -16.62446 -16.35957 -15.92602 -15.67765 -15.50548 -15.25927 -15.14520 -14.86629 -14.63152 -14.48976 -14.30408 -13.91179 -13.49484 -13.31097 -12.87223 -12.76318 -12.64220 -12.57695 -12.38755 -12.33660 -12.14544 -11.92523 -11.74211 -11.57143 -11.47558 -11.39073 -11.14358 -11.08528 -10.67662 -10.61744 -10.42666 -10.01456 -9.70739 -8.59946 -8.20205 -5.46382 -0.78246 0.19771 0.59238 1.35894 1.40909 1.50327 1.56184 2.07798 2.17402 2.52178 2.98630 3.01043 3.15463 3.39697 3.63557 3.83405 3.96042 4.02286 4.03636 4.13562 4.14090 4.25080 4.31246 4.48156 4.51693 4.62501 4.67198 4.75979 4.87597 4.90427 4.92754 4.96129 5.06066 5.08322 5.12355 5.22088 5.26286 5.30078 5.31416 5.42764 5.47736 5.62865 5.98875 6.31732 6.45215 6.58180 7.05058 7.12941 7.70207 8.20934 8.98675 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017776 B = 0.003798 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.787539 B = 7369.768098 C = 8177.867078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.055 0.945 4 C 0.140 3.860 5 H 0.089 0.911 6 N -0.695 5.695 7 C 0.594 3.406 8 O -0.556 6.556 9 C -0.320 4.320 10 S 0.188 5.812 11 C 0.049 3.951 12 N -0.492 5.492 13 C 0.168 3.832 14 C -0.118 4.118 15 C -0.151 4.151 16 C -0.147 4.147 17 C -0.116 4.116 18 C -0.125 4.125 19 C 0.142 3.858 20 N -0.603 5.603 21 C -0.254 4.254 22 H 0.056 0.944 23 C 0.007 3.993 24 N -0.922 5.922 25 Si 0.893 3.107 26 H -0.298 1.298 27 H -0.308 1.308 28 H -0.243 1.243 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.404 0.596 33 H 0.247 0.753 34 H 0.126 0.874 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.047 0.953 43 H 0.030 0.970 44 H 0.044 0.956 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.049 -6.242 -16.039 17.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 H 0.072 0.928 4 C 0.034 3.966 5 H 0.106 0.894 6 N -0.345 5.345 7 C 0.380 3.620 8 O -0.437 6.437 9 C -0.444 4.444 10 S 0.445 5.555 11 C -0.246 4.246 12 N -0.205 5.205 13 C 0.029 3.971 14 C -0.139 4.139 15 C -0.189 4.189 16 C -0.184 4.184 17 C -0.154 4.154 18 C -0.164 4.164 19 C 0.017 3.983 20 N -0.328 5.328 21 C -0.383 4.383 22 H 0.073 0.927 23 C -0.192 4.192 24 N -0.563 5.563 25 Si 0.720 3.280 26 H -0.226 1.226 27 H -0.236 1.236 28 H -0.167 1.167 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.240 0.760 33 H 0.263 0.737 34 H 0.143 0.857 35 H 0.107 0.893 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.120 0.880 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.066 0.934 43 H 0.048 0.952 44 H 0.062 0.938 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.073 -6.170 -15.808 16.970 hybrid contribution 0.381 0.777 0.855 1.217 sum 0.455 -5.393 -14.953 15.902 Atomic orbital electron populations 1.21681 0.94575 1.01312 1.00959 1.21018 0.94429 0.94147 0.85691 0.92788 1.21474 0.93284 0.82696 0.99140 0.89353 1.45921 1.61566 1.18758 1.08292 1.16835 0.77984 0.83346 0.83804 1.90704 1.51642 1.66852 1.34549 1.25469 1.18052 1.02827 0.98036 1.84592 1.51986 1.09101 1.09866 1.29425 1.00269 1.04719 0.90197 1.66047 1.15751 1.17122 1.21625 1.19916 0.94035 0.87949 0.95159 1.20857 1.07410 0.99088 0.86503 1.22955 0.92909 1.00971 1.02045 1.23042 0.97067 1.01606 0.96725 1.21745 0.94939 1.01147 0.97612 1.21874 1.00364 0.98831 0.95296 1.21300 0.83940 0.96876 0.96207 1.44510 1.02667 1.65780 1.19866 1.18452 1.01679 1.33362 0.84806 0.92683 1.25982 0.98511 0.98386 0.96332 1.70143 1.49841 1.32880 1.03471 0.86587 0.79729 0.83969 0.77668 1.22554 1.23577 1.16681 0.93651 0.93190 0.91556 0.75996 0.73736 0.85661 0.89266 0.87038 0.86759 0.88010 0.92355 0.90107 0.90853 0.93421 0.95228 0.93758 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 7.85 71.98 0.56 -3.78 16 2 C 0.15 5.33 3.20 44.98 0.14 5.48 16 3 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 4 C 0.14 4.42 2.33 45.07 0.10 4.52 16 5 H 0.09 2.73 7.58 -2.39 -0.02 2.71 16 6 N -0.70 -22.56 3.46 -446.15 -1.54 -24.11 16 7 C 0.59 19.51 7.75 86.45 0.67 20.18 16 8 O -0.56 -19.96 13.99 -4.29 -0.06 -20.02 16 9 C -0.32 -9.45 6.48 23.88 0.15 -9.30 16 10 S 0.19 4.54 22.35 -56.49 -1.26 3.28 16 11 C 0.05 0.94 12.22 130.60 1.60 2.54 16 12 N -0.49 -12.10 9.81 -190.40 -1.87 -13.97 16 13 C 0.17 4.70 6.42 42.10 0.27 4.97 16 14 C -0.12 -3.08 5.44 -11.51 -0.06 -3.14 16 15 C -0.15 -3.22 10.23 30.60 0.31 -2.91 16 16 C -0.15 -2.95 10.09 30.62 0.31 -2.64 16 17 C -0.12 -3.46 5.58 30.62 0.17 -3.29 16 18 C -0.12 -4.03 5.93 30.68 0.18 -3.85 16 19 C 0.14 5.50 4.59 86.36 0.40 5.90 16 20 N -0.60 -25.00 2.12 -675.22 -1.43 -26.43 16 21 C -0.25 -12.59 8.43 84.03 0.71 -11.88 16 22 H 0.06 2.95 6.81 -2.91 -0.02 2.94 16 23 C 0.01 0.39 4.82 84.86 0.41 0.80 16 24 N -0.92 -53.00 13.97 21.65 0.30 -52.70 16 25 Si 0.89 42.17 27.40 68.60 1.88 44.05 16 26 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 27 H -0.31 -15.00 7.11 99.48 0.71 -14.30 16 28 H -0.24 -10.63 5.25 99.48 0.52 -10.11 16 29 H 0.04 1.62 6.35 -2.39 -0.02 1.60 16 30 H 0.05 1.86 7.71 -2.39 -0.02 1.84 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.40 14.00 6.96 -92.71 -0.64 13.35 16 33 H 0.25 2.43 8.06 -2.91 -0.02 2.40 16 34 H 0.13 3.70 6.18 -2.39 -0.01 3.68 16 35 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.10 2.08 7.74 -2.39 -0.02 2.06 16 39 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.05 1.66 7.53 -2.39 -0.02 1.64 16 43 H 0.03 1.14 6.71 -2.39 -0.02 1.12 16 44 H 0.04 1.92 7.02 -2.39 -0.02 1.90 16 45 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -62.14 366.00 2.13 -60.01 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.19 Total: 26.29 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: 5.93 Total: 3.60 kcal Atomic # 7 Polarization: -112.66 SS G_CDS: -4.54 Total: -117.21 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.06 Total: -20.02 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.88 Total: 44.05 kcal Atomic # 16 Polarization: 4.54 SS G_CDS: -1.26 Total: 3.28 kcal Total: -62.14 2.13 -60.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993965020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.314 kcal (2) G-P(sol) polarization free energy of solvation -62.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds