Wall clock time and date at job start Tue Mar 31 2020 19:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.69924 * 2 1 4 4 C 1.53197 * 109.58491 * 120.35168 * 2 1 3 5 5 H 1.09000 * 109.51936 * 54.45888 * 4 2 1 6 6 N 1.46497 * 109.49747 * 294.37690 * 4 2 1 7 7 C 1.34775 * 119.99834 * 155.16347 * 6 4 2 8 8 O 1.21686 * 120.00089 * 359.97438 * 7 6 4 9 9 C 1.46681 * 120.00080 * 179.97438 * 7 6 4 10 10 C 1.35668 * 126.12764 * 359.97438 * 9 7 6 11 11 N 1.30941 * 114.18924 * 180.02562 * 10 9 7 12 12 C 1.29431 * 117.36613 * 359.97438 * 11 10 9 13 13 C 1.50701 * 124.80341 * 179.97438 * 12 11 10 14 14 C 1.52997 * 117.50058 * 8.65062 * 13 12 11 15 15 C 1.52998 * 117.50235 * 300.02619 * 13 12 11 16 16 S 1.70953 * 110.38932 * 0.24394 * 12 11 10 17 17 C 1.53035 * 109.31095 * 174.42218 * 4 2 1 18 18 C 1.53044 * 109.54112 * 298.63744 * 17 4 2 19 19 C 1.53190 * 109.31256 * 61.36372 * 18 17 4 20 20 N 1.46924 * 108.77624 * 305.36855 * 19 18 17 21 21 C 1.36937 * 120.63039 * 233.60889 * 20 19 18 22 22 H 1.08002 * 120.00283 * 150.15739 * 21 20 19 23 23 C 1.38814 * 120.00066 * 330.16032 * 21 20 19 24 24 N 1.31620 * 119.99879 * 344.49527 * 23 21 20 25 25 Si 1.86794 * 120.00220 * 164.50065 * 23 21 20 26 26 H 1.48505 * 109.47365 * 59.99792 * 25 23 21 27 27 H 1.48501 * 109.47331 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47226 * 300.00061 * 25 23 21 29 29 H 1.08996 * 109.47078 * 299.64764 * 1 2 3 30 30 H 1.08997 * 109.46805 * 59.64674 * 1 2 3 31 31 H 1.09001 * 109.46908 * 179.64200 * 1 2 3 32 32 H 0.96999 * 120.00070 * 335.15434 * 6 4 2 33 33 H 1.08000 * 122.90508 * 0.03684 * 10 9 7 34 34 H 1.09002 * 115.54841 * 154.35988 * 13 12 11 35 35 H 1.08998 * 117.49777 * 359.97438 * 14 13 12 36 36 H 1.09002 * 117.49587 * 145.02056 * 14 13 12 37 37 H 1.09000 * 117.49973 * 214.98082 * 15 13 12 38 38 H 1.09004 * 117.49722 * 359.97438 * 15 13 12 39 39 H 1.09003 * 109.46250 * 58.65431 * 17 4 2 40 40 H 1.09000 * 109.46295 * 178.61497 * 17 4 2 41 41 H 1.08997 * 109.49983 * 181.32096 * 18 17 4 42 42 H 1.09004 * 109.49532 * 301.41491 * 18 17 4 43 43 H 1.09000 * 109.58532 * 65.15629 * 19 18 17 44 44 H 1.09001 * 109.58759 * 185.57691 * 19 18 17 45 45 H 0.96997 * 119.99929 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0436 -0.7293 1.2455 5 1 1.6030 -1.7252 1.2919 6 7 1.6705 0.0268 2.4435 7 6 1.5503 -0.6042 3.6284 8 8 1.7513 -1.8020 3.7029 9 6 1.1773 0.1529 4.8280 10 6 0.9263 1.4849 4.8873 11 7 0.6128 1.9191 6.0822 12 6 0.5794 1.0503 7.0411 13 6 0.2407 1.3650 8.4755 14 6 -0.2829 2.7687 8.7861 15 6 1.1325 2.3693 9.2081 16 16 0.9812 -0.5032 6.4516 17 6 3.5675 -0.8479 1.1702 18 6 3.9570 -1.6657 -0.0634 19 6 3.4651 -0.9470 -1.3236 20 7 2.0227 -0.6996 -1.1944 21 6 1.1538 -1.1132 -2.1687 22 1 0.1398 -1.3804 -1.9101 23 6 1.5763 -1.1890 -3.4888 24 7 2.6869 -0.5880 -3.8599 25 14 0.5685 -2.1437 -4.7386 26 1 -0.7921 -1.5558 -4.8306 27 1 1.2299 -2.0724 -6.0663 28 1 0.4668 -3.5627 -4.3125 29 1 -0.3633 0.5083 0.8931 30 1 -0.3633 0.5193 -0.8868 31 1 -0.3633 -1.0277 -0.0064 32 1 1.5101 0.9816 2.3840 33 1 0.9802 2.1311 4.0237 34 1 -0.1656 0.5362 9.0553 35 1 -0.3819 3.4647 7.9532 36 1 -1.0339 2.8635 9.5704 37 1 1.3127 2.2015 10.2699 38 1 1.9647 2.8022 8.6527 39 1 4.0062 0.1474 1.0993 40 1 3.9378 -1.3447 2.0670 41 1 5.0413 -1.7696 -0.1035 42 1 3.4984 -2.6528 -0.0051 43 1 3.9904 0.0020 -1.4316 44 1 3.6520 -1.5718 -2.1970 45 1 2.9823 -0.6413 -4.7822 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994270377.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:39 Heat of formation + Delta-G solvation = 53.251183 kcal Electronic energy + Delta-G solvation = -26383.915130 eV Core-core repulsion = 22722.523411 eV Total energy + Delta-G solvation = -3661.391718 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.43600 -39.50084 -37.68667 -37.15602 -34.38546 -32.67262 -31.82471 -30.76799 -28.98290 -26.90950 -26.07190 -25.00796 -23.31509 -22.78566 -22.45825 -21.05615 -20.74010 -19.76936 -19.02321 -18.46660 -17.17657 -16.44383 -16.17194 -15.56444 -15.29555 -14.90286 -14.85139 -14.54388 -14.23499 -13.91032 -13.76283 -13.61526 -13.37479 -12.81149 -12.65082 -12.55949 -11.94185 -11.80928 -11.69217 -11.56497 -11.27458 -11.13949 -11.06558 -10.93376 -10.77300 -10.61534 -10.38400 -10.32231 -10.13107 -10.07193 -9.82475 -9.66384 -9.63885 -9.41250 -9.07490 -8.72909 -8.47210 -6.69361 -5.81585 -3.26491 0.02302 0.89721 1.45724 2.21856 3.18057 3.31808 3.37538 3.40721 3.43213 3.45520 3.69405 4.31938 4.39040 4.47268 4.53508 4.72783 4.90109 5.01030 5.22515 5.26519 5.35691 5.36525 5.48214 5.55068 5.57573 5.73897 5.75351 5.80089 5.93562 6.03875 6.17936 6.29836 6.37765 6.49539 6.56936 6.66625 6.72446 6.81119 6.95516 7.03099 7.34713 7.37231 7.59124 7.64312 7.79755 8.24706 8.42910 9.17892 9.80284 10.36849 11.27149 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.027258 B = 0.002385 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.961613 B =11737.412095 C =12028.695405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.029 0.971 4 C 0.132 3.868 5 H 0.089 0.911 6 N -0.704 5.704 7 C 0.590 3.410 8 O -0.537 6.537 9 C -0.290 4.290 10 C 0.092 3.908 11 N -0.479 5.479 12 C 0.066 3.934 13 C -0.102 4.102 14 C -0.148 4.148 15 C -0.154 4.154 16 S 0.233 5.767 17 C -0.117 4.117 18 C -0.140 4.140 19 C 0.170 3.830 20 N -0.581 5.581 21 C -0.254 4.254 22 H 0.070 0.930 23 C 0.005 3.995 24 N -0.902 5.902 25 Si 0.903 3.097 26 H -0.282 1.282 27 H -0.291 1.291 28 H -0.283 1.283 29 H 0.038 0.962 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.396 0.604 33 H 0.182 0.818 34 H 0.129 0.871 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.020 0.980 44 H 0.088 0.912 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.781 5.723 24.007 24.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.060 3.940 3 H 0.046 0.954 4 C 0.026 3.974 5 H 0.107 0.893 6 N -0.354 5.354 7 C 0.375 3.625 8 O -0.415 6.415 9 C -0.415 4.415 10 C -0.067 4.067 11 N -0.193 5.193 12 C -0.208 4.208 13 C -0.124 4.124 14 C -0.187 4.187 15 C -0.193 4.193 16 S 0.493 5.507 17 C -0.156 4.156 18 C -0.180 4.180 19 C 0.044 3.956 20 N -0.304 5.304 21 C -0.383 4.383 22 H 0.087 0.913 23 C -0.194 4.194 24 N -0.545 5.545 25 Si 0.732 3.268 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.210 1.210 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.231 0.769 33 H 0.199 0.801 34 H 0.147 0.853 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.038 0.962 44 H 0.106 0.894 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.596 4.353 24.426 24.947 hybrid contribution -0.420 0.590 -1.586 1.744 sum -3.016 4.943 22.840 23.563 Atomic orbital electron populations 1.21827 0.95589 1.01794 1.00268 1.20563 0.93287 0.93580 0.86569 0.95386 1.21898 0.95310 0.96904 0.83256 0.89323 1.45920 1.69391 1.12233 1.07813 1.16689 0.77535 0.86455 0.81862 1.90846 1.51070 1.14043 1.85558 1.25924 1.17206 0.98674 0.99713 1.22142 0.97237 0.91899 0.95376 1.66007 1.17468 1.36535 0.99267 1.26487 1.01789 0.93725 0.98802 1.20552 1.07704 0.95845 0.88268 1.23026 0.96827 0.95240 1.03570 1.23067 0.94967 1.00853 1.00450 1.84039 1.59056 1.09434 0.98139 1.21771 0.95164 1.00191 0.98470 1.22188 0.99301 0.99719 0.96778 1.20836 0.83095 0.97211 0.94443 1.44018 1.03153 1.65061 1.18182 1.19108 0.95203 1.38035 0.85987 0.91263 1.25091 0.97898 0.99398 0.96981 1.70015 1.24076 1.43571 1.16878 0.86375 0.79574 0.80277 0.80555 1.20859 1.21652 1.20960 0.94334 0.91650 0.92601 0.76942 0.80131 0.85302 0.87228 0.87954 0.87716 0.88186 0.92654 0.93134 0.92916 0.92459 0.96210 0.89430 0.93564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 7.84 37.16 0.29 -2.22 16 2 C 0.17 3.31 3.03 -67.59 -0.20 3.11 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C 0.13 2.36 1.99 -67.81 -0.14 2.22 16 5 H 0.09 1.83 7.58 -51.93 -0.39 1.43 16 6 N -0.70 -10.27 4.56 -55.00 -0.25 -10.52 16 7 C 0.59 9.19 7.75 -12.85 -0.10 9.09 16 8 O -0.54 -10.30 16.63 5.20 0.09 -10.22 16 9 C -0.29 -3.71 6.48 -37.09 -0.24 -3.95 16 10 C 0.09 1.02 10.93 -18.85 -0.21 0.81 16 11 N -0.48 -5.37 9.98 -11.50 -0.11 -5.49 16 12 C 0.07 0.65 6.96 -13.29 -0.09 0.56 16 13 C -0.10 -0.72 6.28 -91.77 -0.58 -1.30 16 14 C -0.15 -0.92 10.12 -26.73 -0.27 -1.19 16 15 C -0.15 -0.91 10.23 -26.73 -0.27 -1.19 16 16 S 0.23 2.53 23.01 -107.50 -2.47 0.06 16 17 C -0.12 -2.09 5.46 -26.69 -0.15 -2.24 16 18 C -0.14 -2.74 6.08 -26.61 -0.16 -2.90 16 19 C 0.17 3.96 5.28 -3.71 -0.02 3.94 16 20 N -0.58 -13.96 2.99 -164.77 -0.49 -14.45 16 21 C -0.25 -6.68 8.58 -15.06 -0.13 -6.81 16 22 H 0.07 1.79 6.23 -52.49 -0.33 1.46 16 23 C 0.01 0.14 4.94 -17.43 -0.09 0.06 16 24 N -0.90 -25.55 11.23 55.49 0.62 -24.93 16 25 Si 0.90 21.42 29.58 -169.99 -5.03 16.39 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 H 0.04 0.58 7.78 -51.93 -0.40 0.17 16 30 H 0.06 1.28 7.67 -51.93 -0.40 0.88 16 31 H 0.05 1.08 7.40 -51.93 -0.38 0.70 16 32 H 0.40 4.67 7.31 -40.82 -0.30 4.37 16 33 H 0.18 1.56 7.15 -52.49 -0.38 1.18 16 34 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.11 0.84 7.84 -51.93 -0.41 0.43 16 36 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.09 2.29 6.15 -51.93 -0.32 1.97 16 45 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 376.10 15.07 5.67 5.67 Total: -1.00 -31.31 376.10 -11.00 -42.31 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -6.67 Total: 3.19 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -2.35 Total: -2.00 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.23 Total: -55.39 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -2.47 Total: 0.06 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.31 -11.00 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994270377.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.560 kcal (2) G-P(sol) polarization free energy of solvation -31.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds