Wall clock time and date at job start Tue Mar 31 2020 19:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.69924 * 2 1 4 4 C 1.53197 * 109.58491 * 120.35168 * 2 1 3 5 5 H 1.09000 * 109.51936 * 54.45888 * 4 2 1 6 6 N 1.46497 * 109.49747 * 294.37690 * 4 2 1 7 7 C 1.34775 * 119.99834 * 155.16347 * 6 4 2 8 8 O 1.21686 * 120.00089 * 359.97438 * 7 6 4 9 9 C 1.46681 * 120.00080 * 179.97438 * 7 6 4 10 10 C 1.35668 * 126.12764 * 359.97438 * 9 7 6 11 11 N 1.30941 * 114.18924 * 180.02562 * 10 9 7 12 12 C 1.29431 * 117.36613 * 359.97438 * 11 10 9 13 13 C 1.50701 * 124.80341 * 179.97438 * 12 11 10 14 14 C 1.52997 * 117.50058 * 8.65062 * 13 12 11 15 15 C 1.52998 * 117.50235 * 300.02619 * 13 12 11 16 16 S 1.70953 * 110.38932 * 0.24394 * 12 11 10 17 17 C 1.53035 * 109.31095 * 174.42218 * 4 2 1 18 18 C 1.53044 * 109.54112 * 298.63744 * 17 4 2 19 19 C 1.53190 * 109.31256 * 61.36372 * 18 17 4 20 20 N 1.46924 * 108.77624 * 305.36855 * 19 18 17 21 21 C 1.36937 * 120.63039 * 233.60889 * 20 19 18 22 22 H 1.08002 * 120.00283 * 150.15739 * 21 20 19 23 23 C 1.38814 * 120.00066 * 330.16032 * 21 20 19 24 24 N 1.31620 * 119.99879 * 344.49527 * 23 21 20 25 25 Si 1.86794 * 120.00220 * 164.50065 * 23 21 20 26 26 H 1.48505 * 109.47365 * 59.99792 * 25 23 21 27 27 H 1.48501 * 109.47331 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47226 * 300.00061 * 25 23 21 29 29 H 1.08996 * 109.47078 * 299.64764 * 1 2 3 30 30 H 1.08997 * 109.46805 * 59.64674 * 1 2 3 31 31 H 1.09001 * 109.46908 * 179.64200 * 1 2 3 32 32 H 0.96999 * 120.00070 * 335.15434 * 6 4 2 33 33 H 1.08000 * 122.90508 * 0.03684 * 10 9 7 34 34 H 1.09002 * 115.54841 * 154.35988 * 13 12 11 35 35 H 1.08998 * 117.49777 * 359.97438 * 14 13 12 36 36 H 1.09002 * 117.49587 * 145.02056 * 14 13 12 37 37 H 1.09000 * 117.49973 * 214.98082 * 15 13 12 38 38 H 1.09004 * 117.49722 * 359.97438 * 15 13 12 39 39 H 1.09003 * 109.46250 * 58.65431 * 17 4 2 40 40 H 1.09000 * 109.46295 * 178.61497 * 17 4 2 41 41 H 1.08997 * 109.49983 * 181.32096 * 18 17 4 42 42 H 1.09004 * 109.49532 * 301.41491 * 18 17 4 43 43 H 1.09000 * 109.58532 * 65.15629 * 19 18 17 44 44 H 1.09001 * 109.58759 * 185.57691 * 19 18 17 45 45 H 0.96997 * 119.99929 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0436 -0.7293 1.2455 5 1 1.6030 -1.7252 1.2919 6 7 1.6705 0.0268 2.4435 7 6 1.5503 -0.6042 3.6284 8 8 1.7513 -1.8020 3.7029 9 6 1.1773 0.1529 4.8280 10 6 0.9263 1.4849 4.8873 11 7 0.6128 1.9191 6.0822 12 6 0.5794 1.0503 7.0411 13 6 0.2407 1.3650 8.4755 14 6 -0.2829 2.7687 8.7861 15 6 1.1325 2.3693 9.2081 16 16 0.9812 -0.5032 6.4516 17 6 3.5675 -0.8479 1.1702 18 6 3.9570 -1.6657 -0.0634 19 6 3.4651 -0.9470 -1.3236 20 7 2.0227 -0.6996 -1.1944 21 6 1.1538 -1.1132 -2.1687 22 1 0.1398 -1.3804 -1.9101 23 6 1.5763 -1.1890 -3.4888 24 7 2.6869 -0.5880 -3.8599 25 14 0.5685 -2.1437 -4.7386 26 1 -0.7921 -1.5558 -4.8306 27 1 1.2299 -2.0724 -6.0663 28 1 0.4668 -3.5627 -4.3125 29 1 -0.3633 0.5083 0.8931 30 1 -0.3633 0.5193 -0.8868 31 1 -0.3633 -1.0277 -0.0064 32 1 1.5101 0.9816 2.3840 33 1 0.9802 2.1311 4.0237 34 1 -0.1656 0.5362 9.0553 35 1 -0.3819 3.4647 7.9532 36 1 -1.0339 2.8635 9.5704 37 1 1.3127 2.2015 10.2699 38 1 1.9647 2.8022 8.6527 39 1 4.0062 0.1474 1.0993 40 1 3.9378 -1.3447 2.0670 41 1 5.0413 -1.7696 -0.1035 42 1 3.4984 -2.6528 -0.0051 43 1 3.9904 0.0020 -1.4316 44 1 3.6520 -1.5718 -2.1970 45 1 2.9823 -0.6413 -4.7822 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994270377.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:39 Heat of formation + Delta-G solvation = 34.451823 kcal Electronic energy + Delta-G solvation = -26384.730331 eV Core-core repulsion = 22722.523411 eV Total energy + Delta-G solvation = -3662.206920 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.46296 -40.63284 -39.19838 -37.78288 -35.95838 -34.33783 -33.47956 -32.02896 -30.45922 -28.03552 -27.44627 -26.82137 -24.37682 -23.69187 -23.23889 -22.40286 -22.21541 -21.25546 -20.23940 -19.29660 -18.34041 -18.09016 -17.32782 -16.86963 -16.44089 -16.37485 -15.80965 -15.61352 -15.56227 -15.34908 -15.12869 -14.89208 -14.80528 -14.46308 -14.29566 -13.36448 -13.28992 -13.17280 -12.80117 -12.73031 -12.63819 -12.53814 -12.40193 -12.35647 -12.03504 -11.91046 -11.86555 -11.78727 -11.72923 -11.57661 -11.31606 -11.13379 -10.63504 -10.55549 -10.52234 -10.14551 -9.80452 -8.65291 -7.85979 -5.32274 -0.85212 0.04917 0.61999 1.31859 1.46845 1.49711 1.55333 2.08087 2.09630 2.53636 2.83782 3.03636 3.29677 3.57657 3.69448 3.74681 3.88712 3.89554 4.00617 4.06542 4.13115 4.19315 4.30537 4.35089 4.49623 4.60239 4.74585 4.81883 4.86956 4.88783 4.90692 4.97021 5.02091 5.11832 5.16096 5.17613 5.25507 5.31137 5.42049 5.45415 5.56698 5.70485 5.75643 6.39811 6.42257 6.52087 7.07350 7.16619 7.86019 8.37813 9.20922 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.027258 B = 0.002385 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.961613 B =11737.412095 C =12028.695405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.166 3.834 3 H 0.037 0.963 4 C 0.149 3.851 5 H 0.061 0.939 6 N -0.693 5.693 7 C 0.595 3.405 8 O -0.580 6.580 9 C -0.324 4.324 10 C 0.111 3.889 11 N -0.498 5.498 12 C 0.082 3.918 13 C -0.119 4.119 14 C -0.144 4.144 15 C -0.145 4.145 16 S 0.232 5.768 17 C -0.110 4.110 18 C -0.129 4.129 19 C 0.176 3.824 20 N -0.600 5.600 21 C -0.254 4.254 22 H 0.071 0.929 23 C -0.047 4.047 24 N -0.932 5.932 25 Si 0.961 3.039 26 H -0.275 1.275 27 H -0.295 1.295 28 H -0.283 1.283 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.040 0.960 32 H 0.413 0.587 33 H 0.204 0.796 34 H 0.151 0.849 35 H 0.093 0.907 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.044 0.956 43 H 0.006 0.994 44 H 0.054 0.946 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.683 6.897 26.709 27.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.059 3.941 3 H 0.054 0.946 4 C 0.042 3.958 5 H 0.079 0.921 6 N -0.344 5.344 7 C 0.382 3.618 8 O -0.461 6.461 9 C -0.448 4.448 10 C -0.049 4.049 11 N -0.212 5.212 12 C -0.191 4.191 13 C -0.141 4.141 14 C -0.183 4.183 15 C -0.184 4.184 16 S 0.493 5.507 17 C -0.149 4.149 18 C -0.169 4.169 19 C 0.050 3.950 20 N -0.323 5.323 21 C -0.385 4.385 22 H 0.089 0.911 23 C -0.243 4.243 24 N -0.578 5.578 25 Si 0.789 3.211 26 H -0.200 1.200 27 H -0.221 1.221 28 H -0.209 1.209 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.250 0.750 33 H 0.221 0.779 34 H 0.169 0.831 35 H 0.112 0.888 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.024 0.976 44 H 0.072 0.928 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.518 5.551 27.163 27.947 hybrid contribution -0.169 0.309 -2.265 2.292 sum -3.687 5.860 24.898 25.843 Atomic orbital electron populations 1.21742 0.94456 1.01119 1.01317 1.20712 0.94264 0.93578 0.85580 0.94560 1.21395 0.95096 0.95594 0.83710 0.92102 1.45640 1.69205 1.12803 1.06719 1.16941 0.76406 0.85989 0.82471 1.90824 1.53072 1.15972 1.86221 1.25591 1.20568 0.99274 0.99415 1.22517 0.94838 0.91430 0.96091 1.66135 1.18786 1.36767 0.99538 1.27085 0.99151 0.92984 0.99858 1.20883 1.09057 0.97229 0.86887 1.23092 0.97736 0.93847 1.03613 1.23153 0.94355 0.99411 1.01453 1.84033 1.59210 1.10065 0.97355 1.21695 0.95125 1.00528 0.97508 1.22024 1.00399 0.98741 0.95733 1.20636 0.83174 0.96180 0.94973 1.44252 1.03154 1.65872 1.19048 1.19381 0.95508 1.36984 0.86578 0.91117 1.25767 0.99112 1.00714 0.98715 1.70154 1.25650 1.45242 1.16734 0.85449 0.78490 0.78961 0.78191 1.20020 1.22136 1.20900 0.90755 0.93097 0.94062 0.75012 0.77931 0.83103 0.88820 0.85698 0.85252 0.89410 0.91345 0.92679 0.90827 0.93702 0.97602 0.92768 0.94195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 7.84 71.98 0.56 -4.03 16 2 C 0.17 6.43 3.03 44.98 0.14 6.56 16 3 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 4 C 0.15 5.22 1.99 45.07 0.09 5.31 16 5 H 0.06 2.53 7.58 -2.39 -0.02 2.51 16 6 N -0.69 -19.17 4.56 -446.14 -2.03 -21.20 16 7 C 0.60 17.99 7.75 86.45 0.67 18.66 16 8 O -0.58 -22.25 16.63 -4.30 -0.07 -22.32 16 9 C -0.32 -7.82 6.48 23.88 0.15 -7.67 16 10 C 0.11 2.21 10.93 84.23 0.92 3.13 16 11 N -0.50 -10.11 9.98 -190.29 -1.90 -12.01 16 12 C 0.08 1.47 6.96 88.46 0.62 2.08 16 13 C -0.12 -1.35 6.28 -11.54 -0.07 -1.42 16 14 C -0.14 -1.38 10.12 30.59 0.31 -1.07 16 15 C -0.14 -1.29 10.23 30.59 0.31 -0.97 16 16 S 0.23 4.75 23.01 -56.49 -1.30 3.45 16 17 C -0.11 -3.82 5.46 30.62 0.17 -3.65 16 18 C -0.13 -5.05 6.08 30.67 0.19 -4.86 16 19 C 0.18 8.39 5.28 86.36 0.46 8.85 16 20 N -0.60 -29.17 2.99 -675.21 -2.02 -31.19 16 21 C -0.25 -13.58 8.58 84.03 0.72 -12.86 16 22 H 0.07 3.69 6.23 -2.91 -0.02 3.67 16 23 C -0.05 -2.61 4.94 84.86 0.42 -2.20 16 24 N -0.93 -54.24 11.23 21.65 0.24 -54.00 16 25 Si 0.96 44.76 29.58 68.60 2.03 46.79 16 26 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 27 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 28 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 29 H 0.07 2.08 7.78 -2.39 -0.02 2.06 16 30 H 0.05 1.95 7.67 -2.39 -0.02 1.93 16 31 H 0.04 1.57 7.40 -2.39 -0.02 1.56 16 32 H 0.41 8.70 7.31 -92.71 -0.68 8.02 16 33 H 0.20 2.89 7.15 -2.91 -0.02 2.87 16 34 H 0.15 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 1.24 7.84 -2.39 -0.02 1.22 16 36 H 0.12 0.64 8.14 -2.39 -0.02 0.63 16 37 H 0.13 0.53 8.14 -2.39 -0.02 0.52 16 38 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.05 2.94 6.15 -2.39 -0.01 2.93 16 45 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -69.24 376.10 0.94 -68.30 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.33 Total: 16.31 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 5.65 Total: 5.86 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -5.71 Total: -118.40 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.07 Total: -22.32 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: 4.75 SS G_CDS: -1.30 Total: 3.45 kcal Total: -69.24 0.94 -68.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994270377.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.755 kcal (2) G-P(sol) polarization free energy of solvation -69.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds