Wall clock time and date at job start Tue Mar 31 2020 19:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.58477 * 2 1 4 4 C 1.53191 * 109.58796 * 120.28706 * 2 1 3 5 5 H 1.09003 * 109.49715 * 294.37378 * 4 2 1 6 6 N 1.46501 * 109.49854 * 54.47004 * 4 2 1 7 7 C 1.34767 * 119.99946 * 204.99976 * 6 4 2 8 8 O 1.21633 * 120.00172 * 0.02562 * 7 6 4 9 9 C 1.47266 * 120.00346 * 180.02562 * 7 6 4 10 10 C 1.35206 * 123.14727 * 180.02562 * 9 7 6 11 11 S 1.70935 * 108.82898 * 179.97438 * 10 9 7 12 12 C 1.70768 * 91.13121 * 0.02562 * 11 10 9 13 13 C 1.50696 * 124.72412 * 180.02562 * 12 11 10 14 14 C 1.53002 * 117.49617 * 8.59470 * 13 12 11 15 15 C 1.53004 * 60.00121 * 252.50924 * 14 13 12 16 16 N 1.28653 * 110.55673 * 359.76553 * 12 11 10 17 17 C 1.53040 * 109.31162 * 174.42492 * 4 2 1 18 18 C 1.53046 * 109.53648 * 298.63171 * 17 4 2 19 19 C 1.53191 * 109.31116 * 61.36530 * 18 17 4 20 20 N 1.46921 * 109.58607 * 239.57641 * 2 1 3 21 21 C 1.36940 * 120.62972 * 6.60612 * 20 2 1 22 22 H 1.08002 * 120.00106 * 330.15977 * 21 20 2 23 23 C 1.38817 * 120.00354 * 150.17060 * 21 20 2 24 24 N 1.31613 * 119.99375 * 344.48624 * 23 21 20 25 25 Si 1.86799 * 120.00157 * 164.48828 * 23 21 20 26 26 H 1.48501 * 109.47001 * 60.00038 * 25 23 21 27 27 H 1.48500 * 109.47115 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47147 * 299.99645 * 25 23 21 29 29 H 1.09007 * 109.47236 * 299.71152 * 1 2 3 30 30 H 1.09001 * 109.47743 * 59.71299 * 1 2 3 31 31 H 1.09002 * 109.47294 * 179.71757 * 1 2 3 32 32 H 0.96993 * 119.99800 * 25.00163 * 6 4 2 33 33 H 1.08002 * 125.58296 * 359.96186 * 10 9 7 34 34 H 1.09000 * 115.55323 * 154.30635 * 13 12 11 35 35 H 1.08995 * 117.50296 * 0.02562 * 14 13 12 36 36 H 1.09003 * 117.49924 * 145.02295 * 14 13 12 37 37 H 1.08996 * 117.50132 * 252.50455 * 15 14 13 38 38 H 1.09005 * 117.49144 * 107.48846 * 15 14 13 39 39 H 1.08998 * 109.46307 * 58.65030 * 17 4 2 40 40 H 1.09001 * 109.46212 * 178.61730 * 17 4 2 41 41 H 1.08994 * 109.49850 * 181.32054 * 18 17 4 42 42 H 1.08994 * 109.49571 * 301.41756 * 18 17 4 43 43 H 1.09011 * 109.58630 * 65.15242 * 19 18 17 44 44 H 1.09001 * 109.58844 * 185.57583 * 19 18 17 45 45 H 0.97006 * 119.99496 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7279 1.2463 5 1 1.7660 -0.1642 2.1370 6 7 1.4514 -2.0664 1.3096 7 6 1.3285 -2.6934 2.4962 8 8 1.7087 -2.1478 3.5146 9 6 0.7338 -4.0391 2.5599 10 6 0.5795 -4.7253 3.7146 11 16 -0.1439 -6.2345 3.3671 12 6 -0.1980 -5.8631 1.7012 13 6 -0.7492 -6.7754 0.6358 14 6 -1.4797 -8.0385 1.0961 15 6 -0.0887 -8.1452 0.4677 16 7 0.2923 -4.6939 1.4828 17 6 3.5675 -0.8465 1.1711 18 6 3.9569 -1.6657 -0.0616 19 6 3.4650 -0.9485 -1.3226 20 7 2.0225 -0.7009 -1.1936 21 6 1.1536 -1.1156 -2.1674 22 1 0.1396 -1.3825 -1.9084 23 6 1.5760 -1.1932 -3.4875 24 7 2.6866 -0.5927 -3.8592 25 14 0.5683 -2.1496 -4.7360 26 1 -0.7923 -1.5618 -4.8287 27 1 1.2290 -2.0790 -6.0641 28 1 0.4667 -3.5680 -4.3080 29 1 -0.3634 0.5094 0.8926 30 1 -0.3634 0.5183 -0.8874 31 1 -0.3634 -1.0277 -0.0051 32 1 1.1479 -2.5013 0.4975 33 1 0.8665 -4.3769 4.6958 34 1 -1.1168 -6.2803 -0.2630 35 1 -1.5620 -8.2095 2.1694 36 1 -2.3282 -8.3746 0.5001 37 1 -0.0221 -8.5515 -0.5414 38 1 0.7445 -8.3866 1.1279 39 1 4.0061 0.1488 1.0990 40 1 3.9379 -1.3423 2.0684 41 1 5.0412 -1.7697 -0.1017 42 1 3.4983 -2.6527 -0.0021 43 1 3.9902 0.0004 -1.4318 44 1 3.6517 -1.5743 -2.1953 45 1 2.9817 -0.6465 -4.7818 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994517040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:06 Heat of formation + Delta-G solvation = 53.052957 kcal Electronic energy + Delta-G solvation = -27512.008018 eV Core-core repulsion = 23850.607704 eV Total energy + Delta-G solvation = -3661.400314 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.47251 -39.10361 -37.66083 -37.03286 -33.90799 -32.36612 -31.64685 -30.59375 -29.38582 -26.55755 -25.85913 -24.97420 -23.81649 -22.77188 -21.83752 -20.96298 -20.67028 -19.72533 -18.76474 -18.37741 -16.56419 -16.39443 -16.27105 -15.43323 -15.21187 -14.92353 -14.65166 -14.19137 -14.14432 -13.85296 -13.57911 -13.29794 -13.00674 -12.91542 -12.53099 -12.51884 -12.14284 -11.85229 -11.76926 -11.25421 -11.20444 -11.11779 -10.93727 -10.88189 -10.67628 -10.58997 -10.48728 -10.09216 -9.98703 -9.92274 -9.74096 -9.67599 -9.60953 -9.27592 -8.91968 -8.49431 -8.39042 -6.63378 -5.77552 -3.22471 0.43662 1.08745 1.49973 2.01108 3.38190 3.41567 3.44109 3.45061 3.53784 3.69115 3.85526 4.45114 4.48970 4.60576 4.71026 4.97958 5.15727 5.25813 5.29265 5.34122 5.37158 5.51629 5.60276 5.63675 5.71038 5.74438 5.77673 5.88888 6.00149 6.16421 6.26348 6.35125 6.45079 6.55190 6.70900 6.72113 6.81273 6.96850 7.00835 7.11605 7.40440 7.43339 7.68839 7.82518 8.08771 8.46100 8.60122 9.21997 9.84748 10.42118 11.30639 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010299 B = 0.004530 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.956472 B = 6179.340847 C = 8060.769971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.160 3.840 3 H 0.041 0.959 4 C 0.131 3.869 5 H 0.077 0.923 6 N -0.678 5.678 7 C 0.585 3.415 8 O -0.552 6.552 9 C 0.023 3.977 10 C -0.233 4.233 11 S 0.190 5.810 12 C 0.062 3.938 13 C -0.085 4.085 14 C -0.170 4.170 15 C -0.159 4.159 16 N -0.432 5.432 17 C -0.120 4.120 18 C -0.141 4.141 19 C 0.173 3.827 20 N -0.585 5.585 21 C -0.253 4.253 22 H 0.069 0.931 23 C 0.007 3.993 24 N -0.901 5.901 25 Si 0.899 3.101 26 H -0.283 1.283 27 H -0.292 1.292 28 H -0.283 1.283 29 H 0.038 0.962 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.419 0.581 33 H 0.188 0.812 34 H 0.138 0.862 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.047 0.953 42 H 0.053 0.947 43 H 0.018 0.982 44 H 0.085 0.915 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.743 -13.380 12.484 19.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.053 3.947 3 H 0.058 0.942 4 C 0.025 3.975 5 H 0.095 0.905 6 N -0.328 5.328 7 C 0.368 3.632 8 O -0.431 6.431 9 C -0.112 4.112 10 C -0.375 4.375 11 S 0.448 5.552 12 C -0.218 4.218 13 C -0.107 4.107 14 C -0.208 4.208 15 C -0.198 4.198 16 N -0.146 5.146 17 C -0.159 4.159 18 C -0.181 4.181 19 C 0.047 3.953 20 N -0.308 5.308 21 C -0.382 4.382 22 H 0.087 0.913 23 C -0.192 4.192 24 N -0.545 5.545 25 Si 0.729 3.271 26 H -0.210 1.210 27 H -0.218 1.218 28 H -0.210 1.210 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.257 0.743 33 H 0.205 0.795 34 H 0.155 0.845 35 H 0.116 0.884 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.118 0.882 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.036 0.964 44 H 0.103 0.897 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.675 -13.533 13.028 19.624 hybrid contribution -0.060 0.335 -1.144 1.194 sum -5.736 -13.197 11.884 18.663 Atomic orbital electron populations 1.21794 0.95639 1.01598 1.00384 1.20711 0.93390 0.93871 0.86737 0.94162 1.21640 0.93059 0.82789 1.00037 0.90469 1.45880 1.59628 1.18172 1.09080 1.17082 0.78736 0.83050 0.84381 1.90762 1.51459 1.66210 1.34688 1.20598 1.04815 0.98214 0.87606 1.26568 1.06911 0.99285 1.04707 1.82591 1.53780 1.14899 1.03940 1.26200 1.03066 0.95520 0.96977 1.20445 1.04625 0.87641 0.97961 1.23148 0.96577 0.99420 1.01646 1.23150 0.96128 0.97097 1.03385 1.66877 1.10888 1.05884 1.30989 1.21771 0.95313 1.00520 0.98294 1.22153 0.98901 0.99666 0.97343 1.20782 0.83184 0.97090 0.94236 1.44132 1.03102 1.64717 1.18888 1.19098 0.95159 1.37845 0.86116 0.91332 1.25078 0.97810 0.99399 0.96951 1.70017 1.24075 1.43656 1.16728 0.86423 0.79621 0.80337 0.80690 1.20966 1.21778 1.20966 0.94255 0.91729 0.92684 0.74292 0.79462 0.84466 0.88427 0.87180 0.87287 0.88247 0.91764 0.93149 0.93463 0.92818 0.96365 0.89653 0.93674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 7.72 37.16 0.29 -2.32 16 2 C 0.16 3.29 3.20 -67.60 -0.22 3.08 16 3 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 4 C 0.13 2.47 2.33 -67.81 -0.16 2.32 16 5 H 0.08 1.44 7.58 -51.93 -0.39 1.04 16 6 N -0.68 -12.75 3.46 -54.81 -0.19 -12.94 16 7 C 0.58 10.81 7.76 -12.60 -0.10 10.71 16 8 O -0.55 -11.10 16.37 5.25 0.09 -11.02 16 9 C 0.02 0.37 6.70 -84.53 -0.57 -0.20 16 10 C -0.23 -3.03 10.62 29.65 0.31 -2.72 16 11 S 0.19 1.88 21.65 -107.50 -2.33 -0.45 16 12 C 0.06 0.78 6.99 -13.61 -0.10 0.68 16 13 C -0.09 -0.86 6.33 -91.77 -0.58 -1.44 16 14 C -0.17 -1.18 10.01 -26.73 -0.27 -1.44 16 15 C -0.16 -1.25 10.23 -26.73 -0.27 -1.52 16 16 N -0.43 -6.87 10.12 -8.51 -0.09 -6.96 16 17 C -0.12 -2.24 5.58 -26.69 -0.15 -2.38 16 18 C -0.14 -2.82 5.93 -26.61 -0.16 -2.98 16 19 C 0.17 4.06 5.28 -3.71 -0.02 4.04 16 20 N -0.58 -13.91 2.64 -164.77 -0.44 -14.34 16 21 C -0.25 -6.54 8.58 -15.06 -0.13 -6.67 16 22 H 0.07 1.75 6.23 -52.49 -0.33 1.42 16 23 C 0.01 0.18 4.94 -17.43 -0.09 0.09 16 24 N -0.90 -25.54 11.23 55.49 0.62 -24.92 16 25 Si 0.90 21.29 29.58 -169.99 -5.03 16.26 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 H 0.04 0.66 8.14 -51.92 -0.42 0.23 16 30 H 0.06 1.31 7.67 -51.93 -0.40 0.91 16 31 H 0.05 1.07 6.37 -51.93 -0.33 0.74 16 32 H 0.42 8.42 7.29 -40.82 -0.30 8.12 16 33 H 0.19 2.19 8.03 -52.49 -0.42 1.77 16 34 H 0.14 1.47 8.14 -51.93 -0.42 1.04 16 35 H 0.10 0.60 7.21 -51.93 -0.37 0.22 16 36 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.05 1.12 7.53 -51.93 -0.39 0.73 16 43 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 44 H 0.09 2.25 6.15 -51.93 -0.32 1.93 16 45 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -30.25 372.37 -10.56 -40.81 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -6.62 Total: 8.72 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -2.20 Total: -0.77 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -0.09 Total: -59.16 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.33 Total: -0.45 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.25 -10.56 -40.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994517040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.862 kcal (2) G-P(sol) polarization free energy of solvation -30.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds