Wall clock time and date at job start Tue Mar 31 2020 19:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.58477 * 2 1 4 4 C 1.53191 * 109.58796 * 120.28706 * 2 1 3 5 5 H 1.09003 * 109.49715 * 294.37378 * 4 2 1 6 6 N 1.46501 * 109.49854 * 54.47004 * 4 2 1 7 7 C 1.34767 * 119.99946 * 204.99976 * 6 4 2 8 8 O 1.21633 * 120.00172 * 0.02562 * 7 6 4 9 9 C 1.47266 * 120.00346 * 180.02562 * 7 6 4 10 10 C 1.35206 * 123.14727 * 180.02562 * 9 7 6 11 11 S 1.70935 * 108.82898 * 179.97438 * 10 9 7 12 12 C 1.70768 * 91.13121 * 0.02562 * 11 10 9 13 13 C 1.50696 * 124.72412 * 180.02562 * 12 11 10 14 14 C 1.53002 * 117.49617 * 8.59470 * 13 12 11 15 15 C 1.53004 * 60.00121 * 252.50924 * 14 13 12 16 16 N 1.28653 * 110.55673 * 359.76553 * 12 11 10 17 17 C 1.53040 * 109.31162 * 174.42492 * 4 2 1 18 18 C 1.53046 * 109.53648 * 298.63171 * 17 4 2 19 19 C 1.53191 * 109.31116 * 61.36530 * 18 17 4 20 20 N 1.46921 * 109.58607 * 239.57641 * 2 1 3 21 21 C 1.36940 * 120.62972 * 6.60612 * 20 2 1 22 22 H 1.08002 * 120.00106 * 330.15977 * 21 20 2 23 23 C 1.38817 * 120.00354 * 150.17060 * 21 20 2 24 24 N 1.31613 * 119.99375 * 344.48624 * 23 21 20 25 25 Si 1.86799 * 120.00157 * 164.48828 * 23 21 20 26 26 H 1.48501 * 109.47001 * 60.00038 * 25 23 21 27 27 H 1.48500 * 109.47115 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47147 * 299.99645 * 25 23 21 29 29 H 1.09007 * 109.47236 * 299.71152 * 1 2 3 30 30 H 1.09001 * 109.47743 * 59.71299 * 1 2 3 31 31 H 1.09002 * 109.47294 * 179.71757 * 1 2 3 32 32 H 0.96993 * 119.99800 * 25.00163 * 6 4 2 33 33 H 1.08002 * 125.58296 * 359.96186 * 10 9 7 34 34 H 1.09000 * 115.55323 * 154.30635 * 13 12 11 35 35 H 1.08995 * 117.50296 * 0.02562 * 14 13 12 36 36 H 1.09003 * 117.49924 * 145.02295 * 14 13 12 37 37 H 1.08996 * 117.50132 * 252.50455 * 15 14 13 38 38 H 1.09005 * 117.49144 * 107.48846 * 15 14 13 39 39 H 1.08998 * 109.46307 * 58.65030 * 17 4 2 40 40 H 1.09001 * 109.46212 * 178.61730 * 17 4 2 41 41 H 1.08994 * 109.49850 * 181.32054 * 18 17 4 42 42 H 1.08994 * 109.49571 * 301.41756 * 18 17 4 43 43 H 1.09011 * 109.58630 * 65.15242 * 19 18 17 44 44 H 1.09001 * 109.58844 * 185.57583 * 19 18 17 45 45 H 0.97006 * 119.99496 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7279 1.2463 5 1 1.7660 -0.1642 2.1370 6 7 1.4514 -2.0664 1.3096 7 6 1.3285 -2.6934 2.4962 8 8 1.7087 -2.1478 3.5146 9 6 0.7338 -4.0391 2.5599 10 6 0.5795 -4.7253 3.7146 11 16 -0.1439 -6.2345 3.3671 12 6 -0.1980 -5.8631 1.7012 13 6 -0.7492 -6.7754 0.6358 14 6 -1.4797 -8.0385 1.0961 15 6 -0.0887 -8.1452 0.4677 16 7 0.2923 -4.6939 1.4828 17 6 3.5675 -0.8465 1.1711 18 6 3.9569 -1.6657 -0.0616 19 6 3.4650 -0.9485 -1.3226 20 7 2.0225 -0.7009 -1.1936 21 6 1.1536 -1.1156 -2.1674 22 1 0.1396 -1.3825 -1.9084 23 6 1.5760 -1.1932 -3.4875 24 7 2.6866 -0.5927 -3.8592 25 14 0.5683 -2.1496 -4.7360 26 1 -0.7923 -1.5618 -4.8287 27 1 1.2290 -2.0790 -6.0641 28 1 0.4667 -3.5680 -4.3080 29 1 -0.3634 0.5094 0.8926 30 1 -0.3634 0.5183 -0.8874 31 1 -0.3634 -1.0277 -0.0051 32 1 1.1479 -2.5013 0.4975 33 1 0.8665 -4.3769 4.6958 34 1 -1.1168 -6.2803 -0.2630 35 1 -1.5620 -8.2095 2.1694 36 1 -2.3282 -8.3746 0.5001 37 1 -0.0221 -8.5515 -0.5414 38 1 0.7445 -8.3866 1.1279 39 1 4.0061 0.1488 1.0990 40 1 3.9379 -1.3423 2.0684 41 1 5.0412 -1.7697 -0.1017 42 1 3.4983 -2.6527 -0.0021 43 1 3.9902 0.0004 -1.4318 44 1 3.6517 -1.5743 -2.1953 45 1 2.9817 -0.6465 -4.7818 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994517040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:05 Heat of formation + Delta-G solvation = 35.634622 kcal Electronic energy + Delta-G solvation = -27512.763334 eV Core-core repulsion = 23850.607704 eV Total energy + Delta-G solvation = -3662.155630 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.68937 -40.42829 -39.03648 -37.93610 -35.65028 -34.04751 -33.41292 -31.70963 -31.05629 -28.09743 -27.08749 -26.77446 -25.00340 -23.52119 -23.32357 -22.42295 -21.88087 -20.95285 -20.34747 -19.51716 -18.30201 -17.58927 -17.30223 -17.03130 -16.59432 -16.39496 -15.77587 -15.75410 -15.50444 -15.21683 -14.97217 -14.68208 -14.58207 -14.42438 -14.24488 -13.60551 -13.28395 -13.05202 -12.96578 -12.88919 -12.72847 -12.47955 -12.40710 -12.37292 -12.21827 -11.96152 -11.88682 -11.71255 -11.52515 -11.41233 -11.19555 -11.06258 -10.81718 -10.58526 -10.49529 -10.06227 -9.71236 -8.60970 -7.82178 -5.28483 -0.54424 0.20525 0.54119 0.87964 1.47830 1.49906 1.55823 2.26890 2.29443 2.53446 2.76014 3.00100 3.33709 3.57166 3.66872 3.80616 3.95367 4.02239 4.03259 4.11334 4.15250 4.18163 4.35710 4.40815 4.53025 4.63187 4.68179 4.73737 4.78177 4.90345 4.95538 4.99371 5.01065 5.07997 5.08603 5.17918 5.19369 5.30657 5.41766 5.52487 5.58154 5.72821 5.77185 6.36640 6.44173 6.68251 7.15293 7.19836 7.88668 8.42040 9.24300 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010299 B = 0.004530 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.956472 B = 6179.340847 C = 8060.769971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.157 3.843 3 H 0.039 0.961 4 C 0.138 3.862 5 H 0.085 0.915 6 N -0.680 5.680 7 C 0.584 3.416 8 O -0.574 6.574 9 C -0.011 4.011 10 C -0.240 4.240 11 S 0.297 5.703 12 C 0.044 3.956 13 C -0.117 4.117 14 C -0.145 4.145 15 C -0.156 4.156 16 N -0.474 5.474 17 C -0.114 4.114 18 C -0.127 4.127 19 C 0.181 3.819 20 N -0.596 5.596 21 C -0.247 4.247 22 H 0.072 0.928 23 C -0.046 4.046 24 N -0.933 5.933 25 Si 0.957 3.043 26 H -0.277 1.277 27 H -0.298 1.298 28 H -0.279 1.279 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.412 0.588 33 H 0.198 0.802 34 H 0.122 0.878 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.042 0.958 43 H 0.000 1.000 44 H 0.053 0.947 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.092 -15.664 14.373 22.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.051 3.949 3 H 0.056 0.944 4 C 0.032 3.968 5 H 0.103 0.897 6 N -0.329 5.329 7 C 0.369 3.631 8 O -0.456 6.456 9 C -0.146 4.146 10 C -0.383 4.383 11 S 0.556 5.444 12 C -0.235 4.235 13 C -0.139 4.139 14 C -0.182 4.182 15 C -0.194 4.194 16 N -0.190 5.190 17 C -0.152 4.152 18 C -0.166 4.166 19 C 0.055 3.945 20 N -0.320 5.320 21 C -0.378 4.378 22 H 0.089 0.911 23 C -0.242 4.242 24 N -0.579 5.579 25 Si 0.786 3.214 26 H -0.203 1.203 27 H -0.225 1.225 28 H -0.206 1.206 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.249 0.751 33 H 0.216 0.784 34 H 0.140 0.860 35 H 0.129 0.871 36 H 0.146 0.854 37 H 0.135 0.865 38 H 0.121 0.879 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.061 0.939 43 H 0.018 0.982 44 H 0.071 0.929 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.049 -15.837 14.948 22.889 hybrid contribution 0.309 0.956 -1.633 1.917 sum -6.740 -14.881 13.315 21.075 Atomic orbital electron populations 1.21689 0.94517 1.01272 1.00940 1.20845 0.94356 0.93624 0.86082 0.94363 1.21488 0.93178 0.83076 0.99092 0.89705 1.45853 1.59917 1.18024 1.09116 1.17417 0.78109 0.83927 0.83646 1.90728 1.52589 1.67159 1.35086 1.20316 1.07444 0.97870 0.89005 1.26911 1.06034 1.00933 1.04384 1.82131 1.50723 1.11265 1.00292 1.26669 1.02221 0.95041 0.99553 1.20534 1.07264 0.88428 0.97686 1.23297 0.96544 0.95784 1.02616 1.23269 0.97026 0.94907 1.04240 1.66845 1.12643 1.07637 1.31830 1.21720 0.95203 1.00816 0.97496 1.21954 0.99738 0.98717 0.96173 1.20558 0.83313 0.95852 0.94735 1.44287 1.02965 1.65309 1.19408 1.19350 0.95404 1.36472 0.86530 0.91090 1.25735 0.98992 1.00758 0.98676 1.70166 1.25762 1.45493 1.16528 0.85493 0.78391 0.79226 0.78255 1.20328 1.22461 1.20551 0.91632 0.93174 0.93374 0.75115 0.78442 0.85979 0.87130 0.85408 0.86485 0.87875 0.90720 0.92582 0.91732 0.93886 0.98160 0.92862 0.94403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 7.72 71.98 0.56 -4.25 16 2 C 0.16 6.48 3.20 44.97 0.14 6.62 16 3 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 4 C 0.14 5.15 2.33 45.07 0.10 5.26 16 5 H 0.08 3.08 7.58 -2.39 -0.02 3.06 16 6 N -0.68 -25.71 3.46 -445.58 -1.54 -27.25 16 7 C 0.58 21.55 7.76 86.62 0.67 22.22 16 8 O -0.57 -22.86 16.37 -4.14 -0.07 -22.93 16 9 C -0.01 -0.36 6.70 40.56 0.27 -0.09 16 10 C -0.24 -5.83 10.62 67.12 0.71 -5.12 16 11 S 0.30 4.96 21.65 -56.49 -1.22 3.74 16 12 C 0.04 1.03 6.99 88.57 0.62 1.65 16 13 C -0.12 -2.20 6.33 -11.54 -0.07 -2.28 16 14 C -0.14 -1.53 10.01 30.60 0.31 -1.23 16 15 C -0.16 -2.08 10.23 30.60 0.31 -1.77 16 16 N -0.47 -15.03 10.12 -180.84 -1.83 -16.86 16 17 C -0.11 -4.15 5.58 30.62 0.17 -3.98 16 18 C -0.13 -5.07 5.93 30.67 0.18 -4.89 16 19 C 0.18 8.75 5.28 86.36 0.46 9.21 16 20 N -0.60 -28.90 2.64 -675.22 -1.78 -30.68 16 21 C -0.25 -13.05 8.58 84.03 0.72 -12.33 16 22 H 0.07 3.66 6.23 -2.91 -0.02 3.64 16 23 C -0.05 -2.53 4.94 84.86 0.42 -2.11 16 24 N -0.93 -54.61 11.23 21.65 0.24 -54.37 16 25 Si 0.96 44.64 29.58 68.60 2.03 46.66 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 27 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 28 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 29 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 30 H 0.05 2.02 7.67 -2.39 -0.02 2.00 16 31 H 0.05 1.88 6.37 -2.39 -0.02 1.86 16 32 H 0.41 16.90 7.29 -92.71 -0.68 16.22 16 33 H 0.20 4.24 8.03 -2.91 -0.02 4.21 16 34 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.11 0.87 7.21 -2.39 -0.02 0.86 16 36 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.04 1.81 7.53 -2.39 -0.02 1.79 16 43 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 44 H 0.05 2.92 6.15 -2.39 -0.01 2.90 16 45 H 0.25 14.18 8.31 -92.70 -0.77 13.41 16 Total: -1.00 -67.10 372.37 1.74 -65.36 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: 0.34 Total: 29.41 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 5.58 Total: 6.92 kcal Atomic # 7 Polarization: -124.25 SS G_CDS: -4.91 Total: -129.16 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.07 Total: -22.93 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: 4.96 SS G_CDS: -1.22 Total: 3.74 kcal Total: -67.10 1.74 -65.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994517040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.995 kcal (2) G-P(sol) polarization free energy of solvation -67.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds