Wall clock time and date at job start Tue Mar 31 2020 19:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.50256 * 2 1 4 4 C 1.53198 * 109.49648 * 239.90607 * 2 1 3 5 5 N 1.46922 * 108.77447 * 185.41812 * 4 2 1 6 6 C 1.34778 * 120.63186 * 233.63140 * 5 4 2 7 7 O 1.21617 * 120.00708 * 174.32637 * 6 5 4 8 8 C 1.47260 * 119.99430 * 354.31680 * 6 5 4 9 9 N 1.29770 * 125.51987 * 140.01127 * 8 6 5 10 10 C 1.32591 * 116.75344 * 179.97438 * 9 8 6 11 11 C 1.34627 * 114.30843 * 359.96299 * 10 9 8 12 12 S 1.71626 * 109.60114 * 359.82089 * 11 10 9 13 13 C 1.51950 * 110.68968 * 180.02562 * 11 10 9 14 14 C 1.54236 * 104.84641 * 17.36635 * 13 11 10 15 15 C 1.52799 * 136.15838 * 179.89261 * 10 9 8 16 16 C 1.47001 * 118.75698 * 53.60480 * 5 4 2 17 17 C 1.53194 * 108.73863 * 306.40924 * 16 5 4 18 18 C 1.53035 * 109.49608 * 120.06822 * 2 1 3 19 19 H 1.09002 * 109.46505 * 61.29472 * 18 2 1 20 20 N 1.46497 * 109.46230 * 301.33666 * 18 2 1 21 21 C 1.36937 * 120.00559 * 154.93142 * 20 18 2 22 22 H 1.08005 * 119.99752 * 359.97438 * 21 20 18 23 23 C 1.38814 * 120.00186 * 180.02562 * 21 20 18 24 24 N 1.31615 * 119.99825 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99971 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.46790 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.46787 * 119.99588 * 25 23 21 28 28 H 1.48489 * 109.46801 * 240.00116 * 25 23 21 29 29 H 1.08999 * 109.47149 * 299.93459 * 1 2 3 30 30 H 1.09008 * 109.47169 * 59.93275 * 1 2 3 31 31 H 1.09001 * 109.47662 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.58347 * 305.19978 * 4 2 1 33 33 H 1.08993 * 109.58508 * 65.48558 * 4 2 1 34 34 H 1.08996 * 110.36430 * 136.21019 * 13 11 10 35 35 H 1.09000 * 110.36417 * 258.52948 * 13 11 10 36 36 H 1.09006 * 110.95224 * 91.62002 * 14 13 11 37 37 H 1.08997 * 110.95737 * 215.31106 * 14 13 11 38 38 H 1.08993 * 110.31309 * 281.37114 * 15 10 9 39 39 H 1.08997 * 110.31451 * 43.55883 * 15 10 9 40 40 H 1.09000 * 109.62665 * 186.62058 * 16 5 4 41 41 H 1.08997 * 109.57987 * 66.17574 * 16 5 4 42 42 H 1.08992 * 109.49892 * 294.65402 * 17 16 5 43 43 H 1.09002 * 109.49708 * 174.58763 * 17 16 5 44 44 H 0.97009 * 119.99788 * 334.93245 * 20 18 2 45 45 H 0.96999 * 119.99634 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0413 -0.7241 -1.2495 5 7 3.5045 -0.8295 -1.1694 6 6 4.2812 -0.3862 -2.1778 7 8 5.4914 -0.3837 -2.0575 8 6 3.6642 0.0949 -3.4254 9 7 4.0557 1.1242 -4.1119 10 6 3.3717 1.4022 -5.2132 11 6 2.3528 0.5578 -5.4608 12 16 2.2826 -0.6363 -4.2301 13 6 1.6282 0.9505 -6.7374 14 6 2.6079 1.8848 -7.4765 15 6 3.4348 2.4627 -6.3115 16 6 4.1058 -1.4270 0.0316 17 6 3.5708 -0.6948 1.2662 18 6 2.0407 -0.7228 1.2485 19 1 1.6966 -1.7570 1.2357 20 7 1.5265 -0.0524 2.4453 21 6 1.3950 -0.7487 3.6170 22 1 1.6700 -1.7923 3.6588 23 6 0.9072 -0.1136 4.7509 24 7 0.5715 1.1580 4.6998 25 14 0.7285 -1.0633 6.3495 26 1 1.1714 -2.4659 6.1441 27 1 1.5655 -0.4280 7.3988 28 1 -0.6938 -1.0513 6.7760 29 1 -0.3633 0.5128 0.8906 30 1 -0.3634 0.5149 -0.8894 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6052 -1.7220 -1.2976 33 1 1.7616 -0.1597 -2.1390 34 1 1.4176 0.0677 -7.3409 35 1 0.7046 1.4793 -6.5020 36 1 3.2418 1.3216 -8.1615 37 1 2.0716 2.6735 -8.0040 38 1 2.9932 3.3959 -5.9622 39 1 4.4668 2.6245 -6.6225 40 1 5.1902 -1.3250 -0.0124 41 1 3.8381 -2.4821 0.0878 42 1 3.9159 0.3390 1.2540 43 1 3.9333 -1.1888 2.1677 44 1 1.2790 0.8848 2.4077 45 1 0.2310 1.6019 5.4922 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036115774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:54 Heat of formation + Delta-G solvation = 27.671183 kcal Electronic energy + Delta-G solvation = -26739.135836 eV Core-core repulsion = 23076.634885 eV Total energy + Delta-G solvation = -3662.500951 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.78829 -39.95840 -37.78901 -36.14953 -34.67643 -32.71079 -31.90688 -29.81042 -29.02481 -28.56371 -26.48139 -25.84374 -24.59238 -22.79635 -22.05439 -21.64400 -20.38687 -19.63688 -18.72684 -18.42740 -17.26079 -16.98979 -16.24200 -16.11217 -15.21162 -14.99852 -14.52327 -14.28183 -14.07807 -13.93273 -13.77817 -13.66109 -13.26730 -13.20961 -12.95244 -12.58680 -12.46156 -12.40828 -11.94225 -11.67422 -11.57774 -11.53927 -11.43769 -11.28275 -10.95535 -10.84922 -10.65930 -10.48998 -10.45364 -10.19512 -9.87360 -9.74167 -9.71450 -9.48909 -8.94488 -8.77430 -8.60253 -6.99113 -5.79842 -3.08655 0.12518 0.76858 1.40831 2.15109 2.51126 3.05543 3.41086 3.46965 3.49099 3.63683 4.04854 4.22408 4.51838 4.54908 4.57718 4.82908 4.97657 5.06107 5.11765 5.21343 5.25783 5.30646 5.37256 5.42257 5.48550 5.51777 5.52912 5.61852 5.68789 5.70619 5.78978 5.81468 5.96195 6.06298 6.23831 6.31122 6.34569 6.43555 6.58030 6.77740 6.83841 7.02073 7.17970 7.40056 7.67406 7.95241 8.38206 9.49915 10.06527 10.41352 11.42681 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022733 B = 0.002707 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.384797 B =10341.864072 C =10874.795144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 H 0.072 0.928 4 C 0.101 3.899 5 N -0.593 5.593 6 C 0.597 3.403 7 O -0.509 6.509 8 C 0.016 3.984 9 N -0.400 5.400 10 C 0.035 3.965 11 C -0.266 4.266 12 S 0.203 5.797 13 C -0.038 4.038 14 C -0.116 4.116 15 C -0.041 4.041 16 C 0.115 3.885 17 C -0.152 4.152 18 C 0.184 3.816 19 H 0.050 0.950 20 N -0.720 5.720 21 C -0.237 4.237 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.384 0.616 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.226 -2.235 -25.340 25.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.090 0.910 4 C -0.022 4.022 5 N -0.327 5.327 6 C 0.380 3.620 7 O -0.383 6.383 8 C -0.263 4.263 9 N -0.115 5.115 10 C -0.100 4.100 11 C -0.388 4.388 12 S 0.461 5.539 13 C -0.077 4.077 14 C -0.155 4.155 15 C -0.081 4.081 16 C -0.006 4.006 17 C -0.193 4.193 18 C 0.074 3.926 19 H 0.068 0.932 20 N -0.360 5.360 21 C -0.369 4.369 22 H 0.089 0.911 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.218 0.782 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.696 -2.983 -24.651 24.841 hybrid contribution 0.017 0.635 0.503 0.810 sum 0.713 -2.348 -24.149 24.273 Atomic orbital electron populations 1.21677 0.93774 1.01981 1.02012 1.21735 0.96758 1.00131 0.94264 0.90989 1.22228 0.78674 1.01710 0.99630 1.47998 1.07183 1.59834 1.17661 1.16700 0.86159 0.78139 0.81051 1.90830 1.13066 1.54155 1.80295 1.27123 0.98936 0.98242 1.01966 1.65730 1.26855 1.14265 1.04649 1.21779 0.93588 0.99928 0.94737 1.26908 1.04691 1.01944 1.05263 1.83848 1.28468 1.27819 1.13784 1.20728 0.97834 0.99726 0.89430 1.22341 0.97375 0.99013 0.96805 1.20904 1.02043 0.95096 0.90027 1.21858 0.99220 0.96612 0.82947 1.22711 1.00014 1.00762 0.95856 1.20197 0.90497 0.95690 0.86235 0.93180 1.42405 1.76481 1.11399 1.05758 1.19255 1.35799 0.94120 0.87679 0.91121 1.24734 1.02065 0.96019 0.98062 1.69666 1.50036 1.09464 1.28822 0.86152 0.77278 0.78889 0.84070 1.20563 1.21926 1.21933 0.90460 0.93882 0.92787 0.90339 0.90358 0.90066 0.89225 0.90302 0.89295 0.89334 0.89785 0.89190 0.91040 0.92008 0.90205 0.78205 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.03 37.16 0.34 -1.69 16 2 C -0.11 -1.69 2.46 -90.50 -0.22 -1.91 16 3 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.10 1.31 4.92 -3.71 -0.02 1.29 16 5 N -0.59 -8.68 2.97 -174.04 -0.52 -9.19 16 6 C 0.60 9.75 7.66 -12.59 -0.10 9.66 16 7 O -0.51 -9.90 16.53 5.26 0.09 -9.81 16 8 C 0.02 0.24 6.42 -14.76 -0.09 0.14 16 9 N -0.40 -6.19 10.63 -6.78 -0.07 -6.26 16 10 C 0.03 0.42 7.62 -82.49 -0.63 -0.21 16 11 C -0.27 -2.67 7.17 -34.97 -0.25 -2.92 16 12 S 0.20 2.13 20.17 -107.50 -2.17 -0.03 16 13 C -0.04 -0.24 6.80 -26.62 -0.18 -0.42 16 14 C -0.12 -0.60 7.11 -25.51 -0.18 -0.79 16 15 C -0.04 -0.33 6.80 -26.26 -0.18 -0.51 16 16 C 0.12 1.70 6.45 -3.67 -0.02 1.67 16 17 C -0.15 -2.64 5.66 -26.61 -0.15 -2.80 16 18 C 0.18 3.39 2.19 -67.89 -0.15 3.24 16 19 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 20 N -0.72 -16.96 4.41 -53.39 -0.24 -17.20 16 21 C -0.24 -6.27 9.93 -15.06 -0.15 -6.42 16 22 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -27.46 13.06 55.49 0.72 -26.73 16 25 Si 0.90 21.92 29.55 -169.99 -5.02 16.90 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 29 H 0.08 1.39 7.36 -51.93 -0.38 1.00 16 30 H 0.04 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.93 4.51 -37.03 -0.17 0.77 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 1.37 7.00 -51.93 -0.36 1.01 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.38 9.79 7.51 -40.82 -0.31 9.48 16 45 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 370.80 15.07 5.59 5.59 Total: -1.00 -32.80 370.80 -10.38 -43.18 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.68 Total: 5.67 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -2.09 Total: -2.11 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: -0.10 Total: -59.39 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.17 Total: -0.03 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.80 -10.38 -43.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036115774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.853 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds