Wall clock time and date at job start Tue Mar 31 2020 19:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.50256 * 2 1 4 4 C 1.53198 * 109.49648 * 239.90607 * 2 1 3 5 5 N 1.46922 * 108.77447 * 185.41812 * 4 2 1 6 6 C 1.34778 * 120.63186 * 233.63140 * 5 4 2 7 7 O 1.21617 * 120.00708 * 174.32637 * 6 5 4 8 8 C 1.47260 * 119.99430 * 354.31680 * 6 5 4 9 9 N 1.29770 * 125.51987 * 140.01127 * 8 6 5 10 10 C 1.32591 * 116.75344 * 179.97438 * 9 8 6 11 11 C 1.34627 * 114.30843 * 359.96299 * 10 9 8 12 12 S 1.71626 * 109.60114 * 359.82089 * 11 10 9 13 13 C 1.51950 * 110.68968 * 180.02562 * 11 10 9 14 14 C 1.54236 * 104.84641 * 17.36635 * 13 11 10 15 15 C 1.52799 * 136.15838 * 179.89261 * 10 9 8 16 16 C 1.47001 * 118.75698 * 53.60480 * 5 4 2 17 17 C 1.53194 * 108.73863 * 306.40924 * 16 5 4 18 18 C 1.53035 * 109.49608 * 120.06822 * 2 1 3 19 19 H 1.09002 * 109.46505 * 61.29472 * 18 2 1 20 20 N 1.46497 * 109.46230 * 301.33666 * 18 2 1 21 21 C 1.36937 * 120.00559 * 154.93142 * 20 18 2 22 22 H 1.08005 * 119.99752 * 359.97438 * 21 20 18 23 23 C 1.38814 * 120.00186 * 180.02562 * 21 20 18 24 24 N 1.31615 * 119.99825 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99971 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.46790 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.46787 * 119.99588 * 25 23 21 28 28 H 1.48489 * 109.46801 * 240.00116 * 25 23 21 29 29 H 1.08999 * 109.47149 * 299.93459 * 1 2 3 30 30 H 1.09008 * 109.47169 * 59.93275 * 1 2 3 31 31 H 1.09001 * 109.47662 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.58347 * 305.19978 * 4 2 1 33 33 H 1.08993 * 109.58508 * 65.48558 * 4 2 1 34 34 H 1.08996 * 110.36430 * 136.21019 * 13 11 10 35 35 H 1.09000 * 110.36417 * 258.52948 * 13 11 10 36 36 H 1.09006 * 110.95224 * 91.62002 * 14 13 11 37 37 H 1.08997 * 110.95737 * 215.31106 * 14 13 11 38 38 H 1.08993 * 110.31309 * 281.37114 * 15 10 9 39 39 H 1.08997 * 110.31451 * 43.55883 * 15 10 9 40 40 H 1.09000 * 109.62665 * 186.62058 * 16 5 4 41 41 H 1.08997 * 109.57987 * 66.17574 * 16 5 4 42 42 H 1.08992 * 109.49892 * 294.65402 * 17 16 5 43 43 H 1.09002 * 109.49708 * 174.58763 * 17 16 5 44 44 H 0.97009 * 119.99788 * 334.93245 * 20 18 2 45 45 H 0.96999 * 119.99634 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0413 -0.7241 -1.2495 5 7 3.5045 -0.8295 -1.1694 6 6 4.2812 -0.3862 -2.1778 7 8 5.4914 -0.3837 -2.0575 8 6 3.6642 0.0949 -3.4254 9 7 4.0557 1.1242 -4.1119 10 6 3.3717 1.4022 -5.2132 11 6 2.3528 0.5578 -5.4608 12 16 2.2826 -0.6363 -4.2301 13 6 1.6282 0.9505 -6.7374 14 6 2.6079 1.8848 -7.4765 15 6 3.4348 2.4627 -6.3115 16 6 4.1058 -1.4270 0.0316 17 6 3.5708 -0.6948 1.2662 18 6 2.0407 -0.7228 1.2485 19 1 1.6966 -1.7570 1.2357 20 7 1.5265 -0.0524 2.4453 21 6 1.3950 -0.7487 3.6170 22 1 1.6700 -1.7923 3.6588 23 6 0.9072 -0.1136 4.7509 24 7 0.5715 1.1580 4.6998 25 14 0.7285 -1.0633 6.3495 26 1 1.1714 -2.4659 6.1441 27 1 1.5655 -0.4280 7.3988 28 1 -0.6938 -1.0513 6.7760 29 1 -0.3633 0.5128 0.8906 30 1 -0.3634 0.5149 -0.8894 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6052 -1.7220 -1.2976 33 1 1.7616 -0.1597 -2.1390 34 1 1.4176 0.0677 -7.3409 35 1 0.7046 1.4793 -6.5020 36 1 3.2418 1.3216 -8.1615 37 1 2.0716 2.6735 -8.0040 38 1 2.9932 3.3959 -5.9622 39 1 4.4668 2.6245 -6.6225 40 1 5.1902 -1.3250 -0.0124 41 1 3.8381 -2.4821 0.0878 42 1 3.9159 0.3390 1.2540 43 1 3.9333 -1.1888 2.1677 44 1 1.2790 0.8848 2.4077 45 1 0.2310 1.6019 5.4922 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036115774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:53 Heat of formation + Delta-G solvation = 6.493336 kcal Electronic energy + Delta-G solvation = -26740.054176 eV Core-core repulsion = 23076.634885 eV Total energy + Delta-G solvation = -3663.419291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.78331 -41.02052 -39.14142 -36.88996 -36.28191 -34.30417 -33.37566 -31.48216 -29.72691 -29.41405 -27.69211 -27.06849 -26.06319 -24.26676 -23.20554 -22.49761 -21.51925 -20.86330 -19.71349 -19.48620 -18.94727 -18.22361 -17.30681 -16.92294 -16.75562 -16.31603 -15.74700 -15.57466 -15.44552 -15.18500 -14.93169 -14.69015 -14.49499 -14.17437 -14.00714 -13.81070 -13.72142 -13.19355 -13.08478 -13.00343 -12.88218 -12.77736 -12.62134 -12.28595 -12.13114 -12.08525 -12.06787 -11.93974 -11.87018 -11.69566 -11.61539 -11.25143 -10.89430 -10.72593 -10.38494 -9.92167 -9.55495 -8.97244 -7.91033 -5.18578 -0.79339 -0.11564 0.54646 1.11879 1.44608 1.48684 1.49612 1.58747 1.95498 2.58027 2.76641 3.33334 3.42507 3.46766 3.64741 3.72801 3.94167 3.98951 4.06073 4.14154 4.24994 4.30249 4.39227 4.40613 4.52801 4.57017 4.67170 4.73499 4.73828 4.77168 4.82094 4.87268 4.94829 5.02734 5.08987 5.09212 5.16395 5.25686 5.29784 5.40268 5.47934 5.55699 5.57855 6.01758 6.30580 6.48293 6.75640 7.37254 8.12662 8.35650 9.32745 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022733 B = 0.002707 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.384797 B =10341.864072 C =10874.795144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.101 4.101 3 H 0.050 0.950 4 C 0.107 3.893 5 N -0.591 5.591 6 C 0.595 3.405 7 O -0.555 6.555 8 C -0.034 4.034 9 N -0.440 5.440 10 C 0.001 3.999 11 C -0.254 4.254 12 S 0.269 5.731 13 C -0.039 4.039 14 C -0.106 4.106 15 C -0.045 4.045 16 C 0.123 3.877 17 C -0.142 4.142 18 C 0.180 3.820 19 H 0.060 0.940 20 N -0.731 5.731 21 C -0.227 4.227 22 H 0.080 0.920 23 C -0.078 4.078 24 N -0.971 5.971 25 Si 0.967 3.033 26 H -0.264 1.264 27 H -0.301 1.301 28 H -0.296 1.296 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.102 0.898 42 H 0.035 0.965 43 H 0.069 0.931 44 H 0.370 0.630 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 -3.982 -28.370 28.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.121 4.121 3 H 0.068 0.932 4 C -0.016 4.016 5 N -0.323 5.323 6 C 0.380 3.620 7 O -0.433 6.433 8 C -0.310 4.310 9 N -0.156 5.156 10 C -0.134 4.134 11 C -0.377 4.377 12 S 0.527 5.473 13 C -0.078 4.078 14 C -0.144 4.144 15 C -0.084 4.084 16 C 0.001 3.999 17 C -0.183 4.183 18 C 0.072 3.928 19 H 0.078 0.922 20 N -0.369 5.369 21 C -0.359 4.359 22 H 0.097 0.903 23 C -0.270 4.270 24 N -0.622 5.622 25 Si 0.797 3.203 26 H -0.188 1.188 27 H -0.228 1.228 28 H -0.223 1.223 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.129 0.871 33 H 0.110 0.890 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.103 0.897 37 H 0.135 0.865 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.120 0.880 42 H 0.054 0.946 43 H 0.087 0.913 44 H 0.202 0.798 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.096 -4.782 -27.703 28.134 hybrid contribution 0.556 1.189 1.296 1.845 sum -0.540 -3.592 -26.406 26.655 Atomic orbital electron populations 1.21591 0.92800 1.02743 1.01593 1.21611 0.97465 0.98905 0.94154 0.93182 1.22325 0.77513 1.03274 0.98499 1.48034 1.07851 1.59272 1.17142 1.17036 0.85763 0.77320 0.81928 1.90784 1.15012 1.56069 1.81440 1.26713 1.01964 0.99995 1.02329 1.65694 1.28509 1.15309 1.06119 1.22413 0.94306 1.01860 0.94863 1.27633 1.03817 1.00413 1.05842 1.83425 1.25018 1.26262 1.12631 1.21012 0.98220 1.00970 0.87622 1.22389 0.96867 0.99496 0.95688 1.21117 1.02682 0.94667 0.89962 1.21767 0.98776 0.97671 0.81708 1.22518 0.99294 0.99515 0.97020 1.20435 0.90709 0.95998 0.85679 0.92157 1.42596 1.76671 1.10886 1.06785 1.19641 1.33390 0.94448 0.88456 0.90251 1.25487 1.03302 0.96908 1.01266 1.69823 1.52164 1.11094 1.29164 0.85160 0.76600 0.78390 0.80167 1.18781 1.22834 1.22309 0.94143 0.91026 0.91368 0.87147 0.88975 0.87935 0.87329 0.89668 0.86521 0.88776 0.90165 0.89988 0.88036 0.94605 0.91284 0.79783 0.94317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 9.03 71.98 0.65 -2.99 16 2 C -0.10 -3.06 2.46 -10.72 -0.03 -3.09 16 3 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 4 C 0.11 2.52 4.92 86.37 0.42 2.95 16 5 N -0.59 -16.87 2.97 -822.78 -2.45 -19.31 16 6 C 0.60 19.72 7.66 86.62 0.66 20.38 16 7 O -0.55 -22.55 16.53 -4.08 -0.07 -22.62 16 8 C -0.03 -0.99 6.42 87.37 0.56 -0.42 16 9 N -0.44 -13.75 10.63 -175.37 -1.86 -15.62 16 10 C 0.00 0.01 7.62 42.30 0.32 0.34 16 11 C -0.25 -4.38 7.17 25.26 0.18 -4.20 16 12 S 0.27 4.92 20.17 -56.49 -1.14 3.78 16 13 C -0.04 -0.31 6.80 30.67 0.21 -0.11 16 14 C -0.11 -0.69 7.11 31.39 0.22 -0.47 16 15 C -0.04 -0.63 6.80 30.90 0.21 -0.42 16 16 C 0.12 3.54 6.45 86.35 0.56 4.10 16 17 C -0.14 -5.02 5.66 30.67 0.17 -4.85 16 18 C 0.18 6.57 2.19 45.02 0.10 6.67 16 19 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 20 N -0.73 -35.03 4.41 -322.81 -1.42 -36.45 16 21 C -0.23 -12.05 9.93 84.03 0.83 -11.22 16 22 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 23 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 24 N -0.97 -58.92 13.06 21.65 0.28 -58.64 16 25 Si 0.97 45.54 29.55 68.60 2.03 47.57 16 26 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 27 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 28 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 29 H 0.04 1.45 7.36 -2.39 -0.02 1.43 16 30 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.09 1.96 4.51 -11.87 -0.05 1.91 16 34 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 37 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 2.55 7.00 -2.39 -0.02 2.53 16 41 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.37 19.63 7.51 -92.70 -0.70 18.94 16 45 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -75.57 370.80 1.19 -74.38 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.27 Total: 24.15 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 5.55 Total: 2.76 kcal Atomic # 7 Polarization: -124.57 SS G_CDS: -5.45 Total: -130.02 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.07 Total: -22.62 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: 4.92 SS G_CDS: -1.14 Total: 3.78 kcal Total: -75.57 1.19 -74.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036115774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.874 kcal (2) G-P(sol) polarization free energy of solvation -75.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds