Wall clock time and date at job start Tue Mar 31 2020 19:33:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09005 * 109.49746 * 2 1
4 4 C 1.53186 * 109.49662 * 120.06883 * 2 1 3
5 5 N 1.46930 * 108.77489 * 174.58727 * 4 2 1
6 6 C 1.34773 * 120.63476 * 126.41380 * 5 4 2
7 7 O 1.21621 * 119.99568 * 354.29946 * 6 5 4
8 8 C 1.47257 * 120.00335 * 174.30112 * 6 5 4
9 9 N 1.29764 * 125.52486 * 140.06142 * 8 6 5
10 10 C 1.32590 * 116.75517 * 179.97438 * 9 8 6
11 11 C 1.34633 * 114.30798 * 0.04230 * 10 9 8
12 12 S 1.71622 * 109.59917 * 359.67366 * 11 10 9
13 13 C 1.51939 * 110.68566 * 179.97438 * 11 10 9
14 14 C 1.54233 * 104.85014 * 342.61790 * 13 11 10
15 15 C 1.52792 * 136.16150 * 180.08772 * 10 9 8
16 16 C 1.46932 * 118.73793 * 306.38705 * 5 4 2
17 17 C 1.53192 * 108.77170 * 53.60825 * 16 5 4
18 18 C 1.53036 * 109.34476 * 305.34835 * 17 16 5
19 19 H 1.08998 * 109.46726 * 181.40271 * 18 17 16
20 20 N 1.46501 * 109.46242 * 301.36513 * 18 17 16
21 21 C 1.36941 * 119.99871 * 275.00039 * 20 18 17
22 22 H 1.08004 * 119.99454 * 359.97438 * 21 20 18
23 23 C 1.38810 * 119.99979 * 179.97438 * 21 20 18
24 24 N 1.31611 * 120.00129 * 0.02562 * 23 21 20
25 25 Si 1.86804 * 119.99698 * 179.97438 * 23 21 20
26 26 H 1.48497 * 109.47198 * 0.02562 * 25 23 21
27 27 H 1.48498 * 109.46829 * 120.00623 * 25 23 21
28 28 H 1.48504 * 109.46932 * 240.00074 * 25 23 21
29 29 H 1.08999 * 109.47246 * 299.93211 * 1 2 3
30 30 H 1.09001 * 109.47265 * 59.93046 * 1 2 3
31 31 H 1.08994 * 109.47261 * 179.97438 * 1 2 3
32 32 H 1.08998 * 109.59212 * 54.79886 * 4 2 1
33 33 H 1.09002 * 109.70202 * 294.44055 * 4 2 1
34 34 H 1.08998 * 110.36834 * 223.77262 * 13 11 10
35 35 H 1.09004 * 110.45608 * 101.51080 * 13 11 10
36 36 H 1.09001 * 110.95240 * 268.37957 * 14 13 11
37 37 H 1.09005 * 110.98192 * 144.67565 * 14 13 11
38 38 H 1.09006 * 110.31349 * 316.45565 * 15 10 9
39 39 H 1.08997 * 110.31703 * 78.63637 * 15 10 9
40 40 H 1.08996 * 109.58691 * 293.82761 * 16 5 4
41 41 H 1.08998 * 109.70405 * 173.46892 * 16 5 4
42 42 H 1.09002 * 109.50157 * 65.31997 * 17 16 5
43 43 H 1.09005 * 109.49754 * 185.37922 * 17 16 5
44 44 H 0.96996 * 120.00126 * 94.99253 * 20 18 17
45 45 H 0.97006 * 120.00373 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8938 1.0275 0.0000
4 6 2.0413 -0.7235 1.2497
5 7 3.5046 -0.8288 1.1697
6 6 4.2811 -0.3859 2.1783
7 8 3.7803 0.1996 3.1193
8 6 5.7359 -0.6109 2.1409
9 7 6.6407 0.2428 2.5103
10 6 7.9047 -0.1431 2.4032
11 6 8.0647 -1.3881 1.9165
12 16 6.5284 -2.0829 1.5962
13 6 9.5390 -1.7444 1.8280
14 6 10.2779 -0.3930 1.9095
15 6 9.2729 0.4706 2.6961
16 6 4.1053 -1.4268 -0.0305
17 6 3.5708 -0.6954 -1.2659
18 6 2.0408 -0.7234 -1.2491
19 1 1.6585 -0.2252 -2.1400
20 7 1.5782 -2.1133 -1.2311
21 6 1.4473 -2.8066 -2.4048
22 1 1.6847 -2.3284 -3.3437
23 6 1.0095 -4.1237 -2.3878
24 7 0.7197 -4.7062 -1.2437
25 14 0.8303 -5.0691 -3.9890
26 1 1.2157 -4.1949 -5.1258
27 1 1.7139 -6.2623 -3.9608
28 1 -0.5808 -5.5020 -4.1529
29 1 -0.3634 0.5128 0.8906
30 1 -0.3634 0.5149 -0.8894
31 1 -0.3633 -1.0276 -0.0005
32 1 1.6052 -1.7213 1.2984
33 1 1.7637 -0.1596 2.1402
34 1 9.7539 -2.2375 0.8800
35 1 9.8269 -2.3850 2.6616
36 1 10.4491 0.0182 0.9147
37 1 11.2165 -0.4936 2.4545
38 1 9.3067 1.5033 2.3487
39 1 9.4886 0.4224 3.7635
40 1 3.8375 -2.4818 -0.0862
41 1 5.1898 -1.3268 0.0126
42 1 3.9159 0.3385 -1.2543
43 1 3.9338 -1.1899 -2.1669
44 1 1.3647 -2.5426 -0.3879
45 1 0.4141 -5.6267 -1.2317
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001036115777.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:33:02
Heat of formation + Delta-G solvation = 29.448972 kcal
Electronic energy + Delta-G solvation = -27132.708694 eV
Core-core repulsion = 23470.284835 eV
Total energy + Delta-G solvation = -3662.423860 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 335.141 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-40.65666 -39.86885 -37.76475 -36.02021 -34.39591 -32.90726 -31.48379 -29.28645
-29.07291 -28.78043 -26.73458 -25.47371 -24.14563 -23.51816 -21.94477 -21.74691
-20.41976 -18.92928 -18.55610 -17.93890 -17.40965 -16.86403 -16.33889 -15.77585
-15.18650 -14.68972 -14.45381 -14.29021 -14.04445 -13.86844 -13.64009 -13.56266
-13.32407 -13.19296 -12.87752 -12.58188 -12.45685 -12.23346 -11.69513 -11.58044
-11.49561 -11.37723 -11.25641 -11.22001 -10.95675 -10.83961 -10.60906 -10.53393
-10.29109 -10.18760 -9.88669 -9.59908 -9.57638 -9.42687 -8.98190 -8.62183
-8.36149 -7.02040 -5.82870 -3.11510 0.26530 0.93869 1.58365 2.28569
2.68719 3.19822 3.38705 3.45337 3.47107 3.78256 4.15523 4.37317
4.54145 4.60436 4.69734 5.06760 5.09047 5.22283 5.25241 5.29743
5.31624 5.39747 5.45739 5.50703 5.52679 5.61400 5.66902 5.75672
5.76900 5.86158 5.90941 6.00248 6.01148 6.16307 6.27710 6.32912
6.46467 6.52988 6.63300 6.70556 6.86114 6.94450 7.36128 7.55387
7.66138 8.11947 8.35463 9.47427 10.03188 10.38547 11.39483
Molecular weight = 335.14amu
Principal moments of inertia in cm(-1)
A = 0.014393 B = 0.003470 C = 0.002999
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1944.917272 B = 8068.184307 C = 9334.691161
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.109 4.109
3 H 0.068 0.932
4 C 0.122 3.878
5 N -0.588 5.588
6 C 0.596 3.404
7 O -0.516 6.516
8 C 0.015 3.985
9 N -0.404 5.404
10 C 0.031 3.969
11 C -0.271 4.271
12 S 0.220 5.780
13 C -0.038 4.038
14 C -0.116 4.116
15 C -0.039 4.039
16 C 0.102 3.898
17 C -0.147 4.147
18 C 0.179 3.821
19 H 0.054 0.946
20 N -0.719 5.719
21 C -0.237 4.237
22 H 0.070 0.930
23 C -0.011 4.011
24 N -0.931 5.931
25 Si 0.903 3.097
26 H -0.281 1.281
27 H -0.293 1.293
28 H -0.293 1.293
29 H 0.044 0.956
30 H 0.054 0.946
31 H 0.071 0.929
32 H 0.082 0.918
33 H 0.088 0.912
34 H 0.082 0.918
35 H 0.087 0.913
36 H 0.079 0.921
37 H 0.087 0.913
38 H 0.082 0.918
39 H 0.086 0.914
40 H 0.093 0.907
41 H 0.068 0.932
42 H 0.050 0.950
43 H 0.078 0.922
44 H 0.384 0.616
45 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.371 7.369 5.529 18.785
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.129 4.129
3 H 0.087 0.913
4 C 0.000 4.000
5 N -0.321 5.321
6 C 0.378 3.622
7 O -0.392 6.392
8 C -0.264 4.264
9 N -0.119 5.119
10 C -0.104 4.104
11 C -0.393 4.393
12 S 0.478 5.522
13 C -0.077 4.077
14 C -0.155 4.155
15 C -0.079 4.079
16 C -0.021 4.021
17 C -0.189 4.189
18 C 0.068 3.932
19 H 0.072 0.928
20 N -0.361 5.361
21 C -0.369 4.369
22 H 0.088 0.912
23 C -0.207 4.207
24 N -0.580 5.580
25 Si 0.735 3.265
26 H -0.206 1.206
27 H -0.220 1.220
28 H -0.220 1.220
29 H 0.064 0.936
30 H 0.073 0.927
31 H 0.090 0.910
32 H 0.100 0.900
33 H 0.107 0.893
34 H 0.100 0.900
35 H 0.105 0.895
36 H 0.098 0.902
37 H 0.106 0.894
38 H 0.101 0.899
39 H 0.104 0.896
40 H 0.112 0.888
41 H 0.086 0.914
42 H 0.069 0.931
43 H 0.096 0.904
44 H 0.219 0.781
45 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges 15.466 7.133 5.668 17.950
hybrid contribution 0.573 -0.299 -0.452 0.788
sum 16.039 6.834 5.216 18.198
Atomic orbital electron populations
1.21662 0.93946 1.03273 1.00596 1.21732 0.96691 0.99019 0.95454
0.91349 1.21780 0.76922 1.02092 0.99205 1.47950 1.07459 1.59402
1.17264 1.16688 0.82703 0.79536 0.83269 1.90810 1.73056 1.40862
1.34427 1.27120 0.98432 0.94011 1.06839 1.65740 0.99499 1.32660
1.13978 1.21747 0.92218 0.93542 1.02917 1.26971 1.02841 1.00938
1.08575 1.84196 0.93939 1.17857 1.56220 1.20705 0.85392 0.98413
1.03216 1.22330 0.97825 0.94087 1.01283 1.20874 0.86041 0.99775
1.01212 1.22076 0.96436 0.99598 0.84025 1.22516 1.00627 0.98720
0.96994 1.20237 0.90551 0.87419 0.94981 0.92803 1.42491 1.78959
1.07689 1.06994 1.19260 1.37195 0.93836 0.86567 0.91160 1.24697
1.02222 0.97189 0.96586 1.69651 1.51711 1.13012 1.23596 0.86178
0.77305 0.79973 0.83070 1.20632 1.21979 1.21973 0.93647 0.92679
0.90956 0.89984 0.89317 0.89990 0.89465 0.90247 0.89436 0.89895
0.89563 0.88842 0.91364 0.93124 0.90388 0.78102 0.93551
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.14 9.05 37.16 0.34 -1.80 16
2 C -0.11 -1.76 2.67 -90.46 -0.24 -2.00 16
3 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16
4 C 0.12 2.03 5.43 -3.71 -0.02 2.01 16
5 N -0.59 -9.87 2.97 -174.10 -0.52 -10.39 16
6 C 0.60 10.69 7.66 -12.60 -0.10 10.60 16
7 O -0.52 -10.64 16.52 5.26 0.09 -10.55 16
8 C 0.01 0.24 6.43 -14.76 -0.09 0.14 16
9 N -0.40 -6.66 10.63 -6.78 -0.07 -6.73 16
10 C 0.03 0.41 7.62 -82.50 -0.63 -0.22 16
11 C -0.27 -3.16 7.17 -34.97 -0.25 -3.41 16
12 S 0.22 2.86 20.17 -107.50 -2.17 0.70 16
13 C -0.04 -0.29 6.80 -26.63 -0.18 -0.47 16
14 C -0.12 -0.72 7.11 -25.51 -0.18 -0.90 16
15 C -0.04 -0.35 6.80 -26.27 -0.18 -0.52 16
16 C 0.10 1.64 5.38 -3.71 -0.02 1.62 16
17 C -0.15 -2.43 5.78 -26.61 -0.15 -2.58 16
18 C 0.18 3.24 2.54 -67.85 -0.17 3.07 16
19 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16
20 N -0.72 -15.98 3.64 -53.35 -0.19 -16.17 16
21 C -0.24 -6.01 9.93 -15.06 -0.15 -6.16 16
22 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16
23 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16
24 N -0.93 -26.35 13.06 55.49 0.72 -25.63 16
25 Si 0.90 21.32 29.55 -169.99 -5.02 16.30 16
26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16
30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16
31 H 0.07 1.30 7.53 -51.93 -0.39 0.91 16
32 H 0.08 1.47 6.64 -51.93 -0.34 1.12 16
33 H 0.09 1.47 6.99 -51.93 -0.36 1.11 16
34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16
35 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16
36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16
37 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16
38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16
39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16
40 H 0.09 1.69 7.74 -51.93 -0.40 1.29 16
41 H 0.07 1.00 4.51 -37.03 -0.17 0.83 16
42 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16
43 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16
44 H 0.38 9.11 5.93 -40.82 -0.24 8.87 16
45 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16
LS Contribution 366.85 15.07 5.53 5.53
Total: -1.00 -30.95 366.85 -10.29 -41.24
By element:
Atomic # 1 Polarization: 13.25 SS G_CDS: -6.53 Total: 6.73 kcal
Atomic # 6 Polarization: 1.11 SS G_CDS: -2.13 Total: -1.02 kcal
Atomic # 7 Polarization: -58.86 SS G_CDS: -0.06 Total: -58.92 kcal
Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal
Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal
Atomic # 16 Polarization: 2.86 SS G_CDS: -2.17 Total: 0.70 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -30.95 -10.29 -41.24 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001036115777.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.686 kcal
(2) G-P(sol) polarization free energy of solvation -30.947 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.739 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.237 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.449 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds