Wall clock time and date at job start Tue Mar 31 2020 19:33:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09005 * 109.49746 * 2 1
4 4 C 1.53186 * 109.49662 * 120.06883 * 2 1 3
5 5 N 1.46930 * 108.77489 * 174.58727 * 4 2 1
6 6 C 1.34773 * 120.63476 * 126.41380 * 5 4 2
7 7 O 1.21621 * 119.99568 * 354.29946 * 6 5 4
8 8 C 1.47257 * 120.00335 * 174.30112 * 6 5 4
9 9 N 1.29764 * 125.52486 * 140.06142 * 8 6 5
10 10 C 1.32590 * 116.75517 * 179.97438 * 9 8 6
11 11 C 1.34633 * 114.30798 * 0.04230 * 10 9 8
12 12 S 1.71622 * 109.59917 * 359.67366 * 11 10 9
13 13 C 1.51939 * 110.68566 * 179.97438 * 11 10 9
14 14 C 1.54233 * 104.85014 * 342.61790 * 13 11 10
15 15 C 1.52792 * 136.16150 * 180.08772 * 10 9 8
16 16 C 1.46932 * 118.73793 * 306.38705 * 5 4 2
17 17 C 1.53192 * 108.77170 * 53.60825 * 16 5 4
18 18 C 1.53036 * 109.34476 * 305.34835 * 17 16 5
19 19 H 1.08998 * 109.46726 * 181.40271 * 18 17 16
20 20 N 1.46501 * 109.46242 * 301.36513 * 18 17 16
21 21 C 1.36941 * 119.99871 * 275.00039 * 20 18 17
22 22 H 1.08004 * 119.99454 * 359.97438 * 21 20 18
23 23 C 1.38810 * 119.99979 * 179.97438 * 21 20 18
24 24 N 1.31611 * 120.00129 * 0.02562 * 23 21 20
25 25 Si 1.86804 * 119.99698 * 179.97438 * 23 21 20
26 26 H 1.48497 * 109.47198 * 0.02562 * 25 23 21
27 27 H 1.48498 * 109.46829 * 120.00623 * 25 23 21
28 28 H 1.48504 * 109.46932 * 240.00074 * 25 23 21
29 29 H 1.08999 * 109.47246 * 299.93211 * 1 2 3
30 30 H 1.09001 * 109.47265 * 59.93046 * 1 2 3
31 31 H 1.08994 * 109.47261 * 179.97438 * 1 2 3
32 32 H 1.08998 * 109.59212 * 54.79886 * 4 2 1
33 33 H 1.09002 * 109.70202 * 294.44055 * 4 2 1
34 34 H 1.08998 * 110.36834 * 223.77262 * 13 11 10
35 35 H 1.09004 * 110.45608 * 101.51080 * 13 11 10
36 36 H 1.09001 * 110.95240 * 268.37957 * 14 13 11
37 37 H 1.09005 * 110.98192 * 144.67565 * 14 13 11
38 38 H 1.09006 * 110.31349 * 316.45565 * 15 10 9
39 39 H 1.08997 * 110.31703 * 78.63637 * 15 10 9
40 40 H 1.08996 * 109.58691 * 293.82761 * 16 5 4
41 41 H 1.08998 * 109.70405 * 173.46892 * 16 5 4
42 42 H 1.09002 * 109.50157 * 65.31997 * 17 16 5
43 43 H 1.09005 * 109.49754 * 185.37922 * 17 16 5
44 44 H 0.96996 * 120.00126 * 94.99253 * 20 18 17
45 45 H 0.97006 * 120.00373 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8938 1.0275 0.0000
4 6 2.0413 -0.7235 1.2497
5 7 3.5046 -0.8288 1.1697
6 6 4.2811 -0.3859 2.1783
7 8 3.7803 0.1996 3.1193
8 6 5.7359 -0.6109 2.1409
9 7 6.6407 0.2428 2.5103
10 6 7.9047 -0.1431 2.4032
11 6 8.0647 -1.3881 1.9165
12 16 6.5284 -2.0829 1.5962
13 6 9.5390 -1.7444 1.8280
14 6 10.2779 -0.3930 1.9095
15 6 9.2729 0.4706 2.6961
16 6 4.1053 -1.4268 -0.0305
17 6 3.5708 -0.6954 -1.2659
18 6 2.0408 -0.7234 -1.2491
19 1 1.6585 -0.2252 -2.1400
20 7 1.5782 -2.1133 -1.2311
21 6 1.4473 -2.8066 -2.4048
22 1 1.6847 -2.3284 -3.3437
23 6 1.0095 -4.1237 -2.3878
24 7 0.7197 -4.7062 -1.2437
25 14 0.8303 -5.0691 -3.9890
26 1 1.2157 -4.1949 -5.1258
27 1 1.7139 -6.2623 -3.9608
28 1 -0.5808 -5.5020 -4.1529
29 1 -0.3634 0.5128 0.8906
30 1 -0.3634 0.5149 -0.8894
31 1 -0.3633 -1.0276 -0.0005
32 1 1.6052 -1.7213 1.2984
33 1 1.7637 -0.1596 2.1402
34 1 9.7539 -2.2375 0.8800
35 1 9.8269 -2.3850 2.6616
36 1 10.4491 0.0182 0.9147
37 1 11.2165 -0.4936 2.4545
38 1 9.3067 1.5033 2.3487
39 1 9.4886 0.4224 3.7635
40 1 3.8375 -2.4818 -0.0862
41 1 5.1898 -1.3268 0.0126
42 1 3.9159 0.3385 -1.2543
43 1 3.9338 -1.1899 -2.1669
44 1 1.3647 -2.5426 -0.3879
45 1 0.4141 -5.6267 -1.2317
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001036115777.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:33:01
Heat of formation + Delta-G solvation = 10.911157 kcal
Electronic energy + Delta-G solvation = -27133.512554 eV
Core-core repulsion = 23470.284835 eV
Total energy + Delta-G solvation = -3663.227720 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 335.141 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-41.80272 -41.06405 -39.19456 -36.88873 -35.99476 -34.53597 -33.06007 -30.99524
-30.05263 -29.55977 -27.89667 -26.91574 -25.55661 -25.13753 -23.16044 -22.71382
-21.47346 -20.22704 -19.64098 -19.26962 -19.16285 -18.16572 -17.40917 -16.78773
-16.68391 -16.23689 -15.98811 -15.63291 -15.25415 -15.11053 -14.92643 -14.72091
-14.55679 -14.31350 -14.11578 -13.81001 -13.66501 -13.16098 -12.98781 -12.96333
-12.88062 -12.73654 -12.47829 -12.32100 -12.13543 -12.04410 -12.02701 -11.96738
-11.88971 -11.60670 -11.58521 -11.18590 -10.90520 -10.75743 -10.41442 -9.84825
-9.57520 -8.91323 -7.86280 -5.12666 -0.81702 -0.12535 0.56405 1.14208
1.45864 1.50952 1.53197 1.61008 1.92070 2.61820 2.75526 3.33257
3.45999 3.47437 3.76096 3.83372 3.93108 3.97357 4.03600 4.13827
4.23953 4.32525 4.38328 4.46948 4.50742 4.54438 4.65655 4.71701
4.79256 4.81784 4.87003 4.89125 4.98766 5.08756 5.11375 5.15642
5.16594 5.21215 5.26572 5.29759 5.43057 5.56439 5.63480 6.05750
6.35332 6.44364 6.75325 7.43526 8.17668 8.42446 9.36922
Molecular weight = 335.14amu
Principal moments of inertia in cm(-1)
A = 0.014393 B = 0.003470 C = 0.002999
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1944.917272 B = 8068.184307 C = 9334.691161
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.100 4.100
3 H 0.084 0.916
4 C 0.124 3.876
5 N -0.585 5.585
6 C 0.596 3.404
7 O -0.553 6.553
8 C -0.027 4.027
9 N -0.430 5.430
10 C 0.003 3.997
11 C -0.255 4.255
12 S 0.238 5.762
13 C -0.041 4.041
14 C -0.104 4.104
15 C -0.041 4.041
16 C 0.109 3.891
17 C -0.141 4.141
18 C 0.175 3.825
19 H 0.054 0.946
20 N -0.724 5.724
21 C -0.225 4.225
22 H 0.076 0.924
23 C -0.070 4.070
24 N -0.967 5.967
25 Si 0.961 3.039
26 H -0.267 1.267
27 H -0.298 1.298
28 H -0.302 1.302
29 H 0.065 0.935
30 H 0.061 0.939
31 H 0.043 0.957
32 H 0.065 0.935
33 H 0.089 0.911
34 H 0.098 0.902
35 H 0.107 0.893
36 H 0.086 0.914
37 H 0.119 0.881
38 H 0.085 0.915
39 H 0.096 0.904
40 H 0.072 0.928
41 H 0.086 0.914
42 H 0.070 0.930
43 H 0.075 0.925
44 H 0.375 0.625
45 H 0.247 0.753
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.248 8.083 4.689 21.397
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.119 4.119
3 H 0.103 0.897
4 C 0.003 3.997
5 N -0.317 5.317
6 C 0.380 3.620
7 O -0.432 6.432
8 C -0.303 4.303
9 N -0.146 5.146
10 C -0.132 4.132
11 C -0.377 4.377
12 S 0.495 5.505
13 C -0.080 4.080
14 C -0.143 4.143
15 C -0.080 4.080
16 C -0.013 4.013
17 C -0.182 4.182
18 C 0.066 3.934
19 H 0.072 0.928
20 N -0.365 5.365
21 C -0.357 4.357
22 H 0.094 0.906
23 C -0.262 4.262
24 N -0.618 5.618
25 Si 0.792 3.208
26 H -0.192 1.192
27 H -0.226 1.226
28 H -0.230 1.230
29 H 0.084 0.916
30 H 0.080 0.920
31 H 0.063 0.937
32 H 0.084 0.916
33 H 0.108 0.892
34 H 0.117 0.883
35 H 0.125 0.875
36 H 0.104 0.896
37 H 0.137 0.863
38 H 0.104 0.896
39 H 0.115 0.885
40 H 0.090 0.910
41 H 0.104 0.896
42 H 0.088 0.912
43 H 0.094 0.906
44 H 0.208 0.792
45 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges 18.354 7.891 4.791 20.545
hybrid contribution -0.204 -0.473 -0.160 0.539
sum 18.151 7.418 4.632 20.148
Atomic orbital electron populations
1.21592 0.93451 1.01803 1.01974 1.21662 0.97026 0.99284 0.93969
0.89749 1.21705 0.77149 1.01249 0.99643 1.47956 1.07380 1.59053
1.17276 1.16966 0.83703 0.78723 0.82632 1.90766 1.74158 1.42641
1.35607 1.26704 0.97638 0.95967 1.10022 1.65725 1.01014 1.33819
1.14056 1.22503 0.92408 0.94800 1.03464 1.27640 1.04182 1.00033
1.05865 1.84059 0.94822 1.16089 1.55519 1.21019 0.82267 0.99854
1.04872 1.22386 0.97998 0.92158 1.01744 1.21112 0.84161 1.00327
1.02429 1.21991 0.97482 0.98178 0.83689 1.22411 0.98981 0.99890
0.96873 1.20423 0.91658 0.85416 0.95937 0.92822 1.42586 1.79018
1.09120 1.05756 1.19588 1.34683 0.93773 0.87640 0.90600 1.25342
1.03555 0.98407 0.98942 1.69795 1.53843 1.12830 1.25335 0.85250
0.76327 0.78661 0.80575 1.19183 1.22579 1.22963 0.91626 0.91966
0.93742 0.91646 0.89250 0.88327 0.87529 0.89564 0.86317 0.89646
0.88531 0.91014 0.89634 0.91171 0.90616 0.79166 0.94383
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.01 9.05 71.98 0.65 -3.36 16
2 C -0.10 -3.16 2.67 -10.69 -0.03 -3.19 16
3 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16
4 C 0.12 4.24 5.43 86.36 0.47 4.71 16
5 N -0.59 -19.94 2.97 -822.97 -2.45 -22.38 16
6 C 0.60 21.91 7.66 86.61 0.66 22.58 16
7 O -0.55 -23.60 16.52 -4.10 -0.07 -23.67 16
8 C -0.03 -0.89 6.43 87.37 0.56 -0.33 16
9 N -0.43 -14.15 10.63 -175.38 -1.86 -16.01 16
10 C 0.00 0.08 7.62 42.29 0.32 0.41 16
11 C -0.25 -5.38 7.17 25.26 0.18 -5.20 16
12 S 0.24 6.01 20.17 -56.49 -1.14 4.87 16
13 C -0.04 -0.46 6.80 30.66 0.21 -0.25 16
14 C -0.10 -0.85 7.11 31.38 0.22 -0.62 16
15 C -0.04 -0.60 6.80 30.90 0.21 -0.39 16
16 C 0.11 3.52 5.38 86.36 0.46 3.99 16
17 C -0.14 -4.49 5.78 30.67 0.18 -4.31 16
18 C 0.17 6.23 2.54 45.04 0.11 6.35 16
19 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16
20 N -0.72 -32.44 3.64 -322.70 -1.18 -33.62 16
21 C -0.22 -11.36 9.93 84.03 0.83 -10.52 16
22 H 0.08 3.70 7.83 -2.91 -0.02 3.68 16
23 C -0.07 -3.77 5.50 84.86 0.47 -3.31 16
24 N -0.97 -56.04 13.06 21.65 0.28 -55.76 16
25 Si 0.96 44.14 29.55 68.60 2.03 46.17 16
26 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16
27 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16
28 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16
29 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16
30 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16
31 H 0.04 1.62 7.53 -2.39 -0.02 1.60 16
32 H 0.07 2.45 6.64 -2.39 -0.02 2.44 16
33 H 0.09 3.04 6.99 -2.39 -0.02 3.03 16
34 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16
35 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16
36 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16
37 H 0.12 0.31 8.14 -2.38 -0.02 0.29 16
38 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16
39 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16
40 H 0.07 2.65 7.74 -2.39 -0.02 2.63 16
41 H 0.09 2.46 4.51 -11.87 -0.05 2.41 16
42 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16
43 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16
44 H 0.37 18.32 5.93 -92.71 -0.55 17.77 16
45 H 0.25 14.13 8.31 -92.70 -0.77 13.36 16
Total: -1.00 -68.62 366.85 1.56 -67.06
By element:
Atomic # 1 Polarization: 26.38 SS G_CDS: 0.42 Total: 26.80 kcal
Atomic # 6 Polarization: 1.02 SS G_CDS: 5.52 Total: 6.54 kcal
Atomic # 7 Polarization: -122.56 SS G_CDS: -5.20 Total: -127.77 kcal
Atomic # 8 Polarization: -23.60 SS G_CDS: -0.07 Total: -23.67 kcal
Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal
Atomic # 16 Polarization: 6.01 SS G_CDS: -1.14 Total: 4.87 kcal
Total: -68.62 1.56 -67.06 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001036115777.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.970 kcal
(2) G-P(sol) polarization free energy of solvation -68.617 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.353 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.558 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.059 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.911 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds