Wall clock time and date at job start Tue Mar 31 2020 19:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.49489 * 2 1 4 4 C 1.53185 * 109.52741 * 120.08112 * 2 1 3 5 5 N 1.46929 * 108.77817 * 174.60319 * 4 2 1 6 6 C 1.34783 * 120.62968 * 126.66571 * 5 4 2 7 7 O 1.21626 * 120.00046 * 351.37569 * 6 5 4 8 8 C 1.47260 * 119.99712 * 171.37598 * 6 5 4 9 9 N 1.33566 * 123.14456 * 352.62524 * 8 6 5 10 10 C 1.28642 * 115.76792 * 179.82769 * 9 8 6 11 11 S 1.70780 * 110.55957 * 0.42597 * 10 9 8 12 12 C 1.35211 * 123.13977 * 172.91981 * 8 6 5 13 13 C 1.50701 * 125.58770 * 359.96158 * 12 8 6 14 14 C 1.52994 * 117.49784 * 188.74641 * 13 12 8 15 15 C 1.52993 * 117.49581 * 120.08483 * 13 12 8 16 16 C 1.46923 * 118.73802 * 306.39228 * 5 4 2 17 17 C 1.53198 * 108.77242 * 53.60861 * 16 5 4 18 18 C 1.53033 * 109.49865 * 239.93778 * 2 1 3 19 19 H 1.09005 * 109.46282 * 298.66973 * 18 2 1 20 20 N 1.46508 * 109.45843 * 58.62720 * 18 2 1 21 21 C 1.36940 * 119.99507 * 205.06692 * 20 18 2 22 22 H 1.07994 * 120.00798 * 0.02562 * 21 20 18 23 23 C 1.38816 * 119.99481 * 179.97438 * 21 20 18 24 24 N 1.31620 * 119.99796 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00027 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.47287 * 89.99663 * 25 23 21 27 27 H 1.48502 * 109.46810 * 209.99248 * 25 23 21 28 28 H 1.48493 * 109.47059 * 329.99227 * 25 23 21 29 29 H 1.08996 * 109.47100 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47082 * 300.06207 * 1 2 3 31 31 H 1.08998 * 109.47342 * 60.06154 * 1 2 3 32 32 H 1.08998 * 109.58812 * 54.81622 * 4 2 1 33 33 H 1.09001 * 109.59238 * 294.39282 * 4 2 1 34 34 H 1.07997 * 124.72073 * 180.15052 * 10 9 8 35 35 H 1.09001 * 115.54814 * 334.42073 * 13 12 8 36 36 H 1.08997 * 117.49851 * 359.97438 * 14 13 12 37 37 H 1.09000 * 117.49509 * 145.02363 * 14 13 12 38 38 H 1.09008 * 117.50126 * 214.98191 * 15 13 12 39 39 H 1.08999 * 117.50419 * 359.97438 * 15 13 12 40 40 H 1.09001 * 109.58408 * 173.39392 * 16 5 4 41 41 H 1.08997 * 109.58672 * 293.81950 * 16 5 4 42 42 H 1.08997 * 109.50115 * 65.31639 * 17 16 5 43 43 H 1.09002 * 109.49262 * 185.41694 * 17 16 5 44 44 H 0.96999 * 120.00150 * 25.06778 * 20 18 2 45 45 H 0.97006 * 119.99680 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0420 -0.7236 1.2493 5 7 3.5054 -0.8283 1.1689 6 6 4.2817 -0.3899 2.1797 7 8 3.7884 0.2376 3.0974 8 6 5.7273 -0.6706 2.1728 9 7 6.3116 -1.4708 1.2772 10 6 7.5841 -1.6137 1.4009 11 16 8.1624 -0.7114 2.7306 12 6 6.5863 -0.1468 3.0761 13 6 6.2151 0.7825 4.2029 14 6 7.3565 1.4274 4.9917 15 6 6.5159 0.3184 5.6294 16 6 4.1060 -1.4254 -0.0317 17 6 3.5708 -0.6938 -1.2667 18 6 2.0408 -0.7226 -1.2485 19 1 1.6972 -1.7570 -1.2355 20 7 1.5258 -0.0526 -2.4453 21 6 1.3944 -0.7492 -3.6169 22 1 1.6700 -1.7925 -3.6587 23 6 0.9060 -0.1145 -4.7507 24 7 0.7802 -0.7838 -5.8769 25 14 0.4285 1.6901 -4.6783 26 1 1.6062 2.5278 -5.0196 27 1 -0.6637 1.9524 -5.6496 28 1 -0.0365 2.0244 -3.3082 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5148 0.8895 31 1 -0.3634 0.5129 -0.8905 32 1 1.6065 -1.7217 1.2978 33 1 1.7645 -0.1581 2.1388 34 1 8.2002 -2.2231 0.7565 35 1 5.3139 1.3752 4.0459 36 1 8.3758 1.1792 4.6960 37 1 7.2060 2.4444 5.3541 38 1 5.8127 0.6062 6.4111 39 1 6.9818 -0.6592 5.7530 40 1 5.1902 -1.3227 0.0126 41 1 3.8388 -2.4806 -0.0877 42 1 3.9153 0.3403 -1.2548 43 1 3.9333 -1.1882 -2.1679 44 1 1.2779 0.8844 -2.4077 45 1 0.4392 -0.3402 -6.6693 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036194321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:35 Heat of formation + Delta-G solvation = 63.856253 kcal Electronic energy + Delta-G solvation = -27055.297128 eV Core-core repulsion = 23394.365280 eV Total energy + Delta-G solvation = -3660.931848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.99406 -39.11660 -37.77428 -37.35930 -34.65540 -32.81881 -31.49061 -30.76305 -29.76376 -27.44716 -25.66608 -24.96068 -23.00251 -22.74164 -22.28736 -21.83171 -21.38759 -19.85650 -18.96026 -18.36295 -17.45381 -16.64317 -16.26397 -15.78001 -15.43387 -15.07513 -14.74952 -14.49884 -14.30928 -14.20432 -13.75315 -13.58643 -13.23819 -12.93546 -12.49990 -12.45024 -12.38266 -12.19119 -11.99909 -11.79202 -11.69990 -11.41293 -11.34429 -11.01695 -10.93265 -10.79736 -10.62720 -10.50171 -10.20189 -9.95013 -9.71611 -9.69703 -9.55809 -9.35545 -9.14505 -8.81781 -8.39921 -7.22388 -5.75357 -3.09921 0.21965 0.88369 1.30399 1.77461 3.10895 3.23449 3.38389 3.42010 3.46493 3.57108 3.86616 4.14679 4.44325 4.60687 4.62284 4.69663 4.88732 5.10743 5.11672 5.21074 5.23892 5.34106 5.37721 5.47966 5.52858 5.62144 5.67489 5.70222 5.77174 5.81617 5.91926 6.00979 6.02835 6.23473 6.31313 6.33790 6.43608 6.52963 6.66229 6.73956 6.90155 7.04001 7.12223 7.55153 8.01352 8.18462 8.44073 9.22741 9.95676 10.16296 11.43161 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018883 B = 0.002962 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.470940 B = 9451.444487 C =10095.540913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.068 0.932 4 C 0.121 3.879 5 N -0.587 5.587 6 C 0.592 3.408 7 O -0.541 6.541 8 C 0.006 3.994 9 N -0.425 5.425 10 C -0.008 4.008 11 S 0.198 5.802 12 C -0.151 4.151 13 C -0.083 4.083 14 C -0.179 4.179 15 C -0.159 4.159 16 C 0.080 3.920 17 C -0.150 4.150 18 C 0.188 3.812 19 H 0.056 0.944 20 N -0.746 5.746 21 C -0.238 4.238 22 H 0.090 0.910 23 C 0.004 3.996 24 N -0.935 5.935 25 Si 0.882 3.118 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.277 1.277 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.207 0.793 35 H 0.146 0.854 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.133 0.867 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.079 0.921 44 H 0.360 0.640 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.330 0.154 22.789 28.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.086 0.914 4 C -0.002 4.002 5 N -0.318 5.318 6 C 0.378 3.622 7 O -0.420 6.420 8 C -0.128 4.128 9 N -0.139 5.139 10 C -0.307 4.307 11 S 0.454 5.546 12 C -0.275 4.275 13 C -0.104 4.104 14 C -0.216 4.216 15 C -0.196 4.196 16 C -0.043 4.043 17 C -0.191 4.191 18 C 0.078 3.922 19 H 0.074 0.926 20 N -0.388 5.388 21 C -0.368 4.368 22 H 0.108 0.892 23 C -0.192 4.192 24 N -0.583 5.583 25 Si 0.713 3.287 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.203 1.203 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.223 0.777 35 H 0.163 0.837 36 H 0.113 0.887 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.149 0.851 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.097 0.903 44 H 0.193 0.807 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 16.744 0.103 23.004 28.453 hybrid contribution -1.265 1.286 -0.552 1.887 sum 15.478 1.389 22.452 27.306 Atomic orbital electron populations 1.21672 0.94176 1.02095 1.01542 1.21769 0.96479 1.00021 0.95000 0.91389 1.21733 0.78392 1.00899 0.99191 1.47971 1.06752 1.59150 1.17884 1.17040 0.83702 0.79139 0.82341 1.90723 1.73716 1.40806 1.36738 1.20370 0.96528 1.00834 0.95051 1.67037 1.08261 1.15913 1.22681 1.28597 0.94852 1.04844 1.02380 1.82773 1.07039 1.39606 1.25146 1.24781 0.97145 1.03625 1.01903 1.20629 1.01464 0.99967 0.88306 1.23181 0.95542 0.98889 1.04005 1.23073 1.02884 0.99089 0.94602 1.22825 1.02125 0.96524 0.82828 1.22627 0.99332 1.00259 0.96833 1.20209 0.90885 0.95875 0.85235 0.92623 1.42785 1.78162 1.10153 1.07692 1.19065 1.35984 0.95790 0.85985 0.89219 1.24652 1.01500 0.97377 0.95648 1.69701 1.52361 1.35636 1.00627 0.86582 0.78177 0.86940 0.77013 1.21235 1.21831 1.20319 0.92586 0.93604 0.91409 0.91294 0.89313 0.77668 0.83658 0.88671 0.87590 0.87666 0.88639 0.85082 0.91966 0.92790 0.90282 0.80712 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.03 37.16 0.34 -1.84 16 2 C -0.11 -1.87 2.46 -90.51 -0.22 -2.09 16 3 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 4 C 0.12 1.80 5.73 -3.71 -0.02 1.78 16 5 N -0.59 -9.05 2.97 -174.10 -0.52 -9.57 16 6 C 0.59 9.26 7.64 -12.59 -0.10 9.16 16 7 O -0.54 -9.19 13.69 5.25 0.07 -9.12 16 8 C 0.01 0.08 6.47 -84.52 -0.55 -0.47 16 9 N -0.42 -5.10 6.80 -12.36 -0.08 -5.19 16 10 C -0.01 -0.07 12.17 51.43 0.63 0.56 16 11 S 0.20 1.46 21.77 -107.50 -2.34 -0.88 16 12 C -0.15 -1.66 6.04 -35.39 -0.21 -1.88 16 13 C -0.08 -0.86 5.33 -91.78 -0.49 -1.35 16 14 C -0.18 -1.30 10.03 -26.70 -0.27 -1.57 16 15 C -0.16 -1.27 10.24 -26.70 -0.27 -1.54 16 16 C 0.08 1.21 5.97 -3.71 -0.02 1.19 16 17 C -0.15 -2.66 5.66 -26.61 -0.15 -2.81 16 18 C 0.19 3.61 2.19 -67.89 -0.15 3.46 16 19 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 20 N -0.75 -17.46 4.21 -53.38 -0.22 -17.68 16 21 C -0.24 -6.63 10.41 -15.06 -0.16 -6.78 16 22 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 23 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 24 N -0.94 -29.34 13.97 55.49 0.78 -28.57 16 25 Si 0.88 22.28 27.74 -169.99 -4.71 17.56 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 28 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.23 7.36 -51.93 -0.38 0.84 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.09 1.33 7.00 -51.93 -0.36 0.96 16 34 H 0.21 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.15 1.81 6.33 -51.93 -0.33 1.49 16 36 H 0.09 0.59 7.28 -51.93 -0.38 0.22 16 37 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.13 1.91 4.11 -71.29 -0.29 1.62 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.36 8.44 5.37 -40.82 -0.22 8.23 16 45 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 368.12 15.07 5.55 5.55 Total: -1.00 -33.07 368.12 -9.86 -42.93 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -6.63 Total: 9.13 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -1.74 Total: -4.16 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: -0.05 Total: -61.01 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.07 Total: -9.12 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.71 Total: 17.56 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.34 Total: -0.88 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.07 -9.86 -42.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036194321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.787 kcal (2) G-P(sol) polarization free energy of solvation -33.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds