Wall clock time and date at job start Tue Mar 31 2020 19:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.49489 * 2 1 4 4 C 1.53185 * 109.52741 * 120.08112 * 2 1 3 5 5 N 1.46929 * 108.77817 * 174.60319 * 4 2 1 6 6 C 1.34783 * 120.62968 * 126.66571 * 5 4 2 7 7 O 1.21626 * 120.00046 * 351.37569 * 6 5 4 8 8 C 1.47260 * 119.99712 * 171.37598 * 6 5 4 9 9 N 1.33566 * 123.14456 * 352.62524 * 8 6 5 10 10 C 1.28642 * 115.76792 * 179.82769 * 9 8 6 11 11 S 1.70780 * 110.55957 * 0.42597 * 10 9 8 12 12 C 1.35211 * 123.13977 * 172.91981 * 8 6 5 13 13 C 1.50701 * 125.58770 * 359.96158 * 12 8 6 14 14 C 1.52994 * 117.49784 * 188.74641 * 13 12 8 15 15 C 1.52993 * 117.49581 * 120.08483 * 13 12 8 16 16 C 1.46923 * 118.73802 * 306.39228 * 5 4 2 17 17 C 1.53198 * 108.77242 * 53.60861 * 16 5 4 18 18 C 1.53033 * 109.49865 * 239.93778 * 2 1 3 19 19 H 1.09005 * 109.46282 * 298.66973 * 18 2 1 20 20 N 1.46508 * 109.45843 * 58.62720 * 18 2 1 21 21 C 1.36940 * 119.99507 * 205.06692 * 20 18 2 22 22 H 1.07994 * 120.00798 * 0.02562 * 21 20 18 23 23 C 1.38816 * 119.99481 * 179.97438 * 21 20 18 24 24 N 1.31620 * 119.99796 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00027 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.47287 * 89.99663 * 25 23 21 27 27 H 1.48502 * 109.46810 * 209.99248 * 25 23 21 28 28 H 1.48493 * 109.47059 * 329.99227 * 25 23 21 29 29 H 1.08996 * 109.47100 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47082 * 300.06207 * 1 2 3 31 31 H 1.08998 * 109.47342 * 60.06154 * 1 2 3 32 32 H 1.08998 * 109.58812 * 54.81622 * 4 2 1 33 33 H 1.09001 * 109.59238 * 294.39282 * 4 2 1 34 34 H 1.07997 * 124.72073 * 180.15052 * 10 9 8 35 35 H 1.09001 * 115.54814 * 334.42073 * 13 12 8 36 36 H 1.08997 * 117.49851 * 359.97438 * 14 13 12 37 37 H 1.09000 * 117.49509 * 145.02363 * 14 13 12 38 38 H 1.09008 * 117.50126 * 214.98191 * 15 13 12 39 39 H 1.08999 * 117.50419 * 359.97438 * 15 13 12 40 40 H 1.09001 * 109.58408 * 173.39392 * 16 5 4 41 41 H 1.08997 * 109.58672 * 293.81950 * 16 5 4 42 42 H 1.08997 * 109.50115 * 65.31639 * 17 16 5 43 43 H 1.09002 * 109.49262 * 185.41694 * 17 16 5 44 44 H 0.96999 * 120.00150 * 25.06778 * 20 18 2 45 45 H 0.97006 * 119.99680 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0420 -0.7236 1.2493 5 7 3.5054 -0.8283 1.1689 6 6 4.2817 -0.3899 2.1797 7 8 3.7884 0.2376 3.0974 8 6 5.7273 -0.6706 2.1728 9 7 6.3116 -1.4708 1.2772 10 6 7.5841 -1.6137 1.4009 11 16 8.1624 -0.7114 2.7306 12 6 6.5863 -0.1468 3.0761 13 6 6.2151 0.7825 4.2029 14 6 7.3565 1.4274 4.9917 15 6 6.5159 0.3184 5.6294 16 6 4.1060 -1.4254 -0.0317 17 6 3.5708 -0.6938 -1.2667 18 6 2.0408 -0.7226 -1.2485 19 1 1.6972 -1.7570 -1.2355 20 7 1.5258 -0.0526 -2.4453 21 6 1.3944 -0.7492 -3.6169 22 1 1.6700 -1.7925 -3.6587 23 6 0.9060 -0.1145 -4.7507 24 7 0.7802 -0.7838 -5.8769 25 14 0.4285 1.6901 -4.6783 26 1 1.6062 2.5278 -5.0196 27 1 -0.6637 1.9524 -5.6496 28 1 -0.0365 2.0244 -3.3082 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5148 0.8895 31 1 -0.3634 0.5129 -0.8905 32 1 1.6065 -1.7217 1.2978 33 1 1.7645 -0.1581 2.1388 34 1 8.2002 -2.2231 0.7565 35 1 5.3139 1.3752 4.0459 36 1 8.3758 1.1792 4.6960 37 1 7.2060 2.4444 5.3541 38 1 5.8127 0.6062 6.4111 39 1 6.9818 -0.6592 5.7530 40 1 5.1902 -1.3227 0.0126 41 1 3.8388 -2.4806 -0.0877 42 1 3.9153 0.3403 -1.2548 43 1 3.9333 -1.1882 -2.1679 44 1 1.2779 0.8844 -2.4077 45 1 0.4392 -0.3402 -6.6693 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036194321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:34 Heat of formation + Delta-G solvation = 43.570602 kcal Electronic energy + Delta-G solvation = -27056.176780 eV Core-core repulsion = 23394.365280 eV Total energy + Delta-G solvation = -3661.811500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.97591 -40.22898 -38.94073 -38.18614 -36.26922 -34.46243 -33.23806 -31.64926 -31.41457 -28.51376 -27.03364 -26.20422 -24.46759 -23.40550 -23.16194 -22.97960 -22.76967 -21.32314 -20.09693 -19.49246 -19.09418 -17.54816 -17.34882 -16.85201 -16.67122 -16.42562 -16.04422 -15.74398 -15.31078 -15.21850 -15.09726 -14.89150 -14.79392 -14.45869 -14.10410 -13.73340 -13.51351 -13.17119 -13.10647 -12.96580 -12.88761 -12.82545 -12.49631 -12.44622 -12.18341 -12.06552 -12.01889 -11.90520 -11.79447 -11.58892 -11.22338 -11.01680 -10.95829 -10.39635 -10.12145 -9.97466 -9.59145 -9.25765 -8.01355 -5.33368 -0.52917 0.21286 0.59750 0.88953 1.36319 1.38094 1.45549 1.99505 2.21351 2.47856 2.89934 3.06894 3.30302 3.40700 3.52143 3.67635 3.77492 3.90622 4.01845 4.04792 4.10114 4.17675 4.32497 4.34746 4.44007 4.54179 4.62048 4.68264 4.68851 4.75610 4.80213 4.86854 4.93961 4.99283 5.10421 5.14490 5.15469 5.20550 5.30493 5.37460 5.46093 5.66736 5.78700 6.22760 6.26435 6.46090 7.04435 7.08221 7.84635 8.04343 9.20332 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018883 B = 0.002962 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.470940 B = 9451.444487 C =10095.540913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.102 4.102 3 H 0.060 0.940 4 C 0.125 3.875 5 N -0.593 5.593 6 C 0.586 3.414 7 O -0.563 6.563 8 C -0.028 4.028 9 N -0.457 5.457 10 C -0.011 4.011 11 S 0.285 5.715 12 C -0.164 4.164 13 C -0.113 4.113 14 C -0.157 4.157 15 C -0.154 4.154 16 C 0.092 3.908 17 C -0.139 4.139 18 C 0.183 3.817 19 H 0.046 0.954 20 N -0.747 5.747 21 C -0.219 4.219 22 H 0.059 0.941 23 C -0.063 4.063 24 N -0.984 5.984 25 Si 0.948 3.052 26 H -0.283 1.283 27 H -0.296 1.296 28 H -0.254 1.254 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.241 0.759 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.146 0.854 41 H 0.065 0.935 42 H 0.045 0.955 43 H 0.060 0.940 44 H 0.362 0.638 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.605 0.886 25.273 31.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.122 4.122 3 H 0.079 0.921 4 C 0.002 3.998 5 N -0.323 5.323 6 C 0.373 3.627 7 O -0.443 6.443 8 C -0.162 4.162 9 N -0.172 5.172 10 C -0.309 4.309 11 S 0.543 5.457 12 C -0.289 4.289 13 C -0.134 4.134 14 C -0.195 4.195 15 C -0.192 4.192 16 C -0.031 4.031 17 C -0.180 4.180 18 C 0.075 3.925 19 H 0.064 0.936 20 N -0.389 5.389 21 C -0.350 4.350 22 H 0.077 0.923 23 C -0.254 4.254 24 N -0.635 5.635 25 Si 0.777 3.223 26 H -0.209 1.209 27 H -0.223 1.223 28 H -0.179 1.179 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.257 0.743 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.162 0.838 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.195 0.805 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 19.047 0.834 25.552 31.881 hybrid contribution -1.815 0.983 -1.203 2.389 sum 17.233 1.818 24.349 29.885 Atomic orbital electron populations 1.21632 0.93410 1.02375 1.01675 1.21641 0.97061 0.99303 0.94203 0.92115 1.21675 0.78628 1.01310 0.98141 1.48016 1.06835 1.59440 1.18050 1.17467 0.84963 0.78422 0.81805 1.90699 1.74569 1.41686 1.37390 1.20135 0.95615 1.03230 0.97170 1.66855 1.10022 1.16865 1.23468 1.29192 0.94146 1.04511 1.03006 1.82431 1.03153 1.37152 1.22972 1.25089 0.99342 1.03128 1.01323 1.20533 1.02111 1.01194 0.89533 1.23299 0.95228 0.99275 1.01670 1.23172 1.02987 0.99939 0.93074 1.22749 1.02941 0.96032 0.81423 1.22445 0.97987 0.99952 0.97635 1.20407 0.91765 0.95366 0.84965 0.93588 1.42778 1.78410 1.10134 1.07607 1.19000 1.33892 0.94681 0.87445 0.92279 1.25396 1.02630 1.02020 0.95342 1.69872 1.54477 1.37675 1.01486 0.85504 0.77592 0.81336 0.77911 1.20944 1.22326 1.17887 0.92277 0.91017 0.93630 0.90151 0.89024 0.74296 0.86634 0.87080 0.86514 0.87352 0.87738 0.83768 0.91653 0.93580 0.92119 0.80478 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 9.03 71.98 0.65 -3.44 16 2 C -0.10 -3.33 2.46 -10.72 -0.03 -3.36 16 3 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 4 C 0.13 3.67 5.73 86.36 0.49 4.17 16 5 N -0.59 -18.18 2.97 -822.96 -2.45 -20.63 16 6 C 0.59 18.35 7.64 86.61 0.66 19.01 16 7 O -0.56 -19.40 13.69 -4.11 -0.06 -19.46 16 8 C -0.03 -0.73 6.47 40.55 0.26 -0.47 16 9 N -0.46 -10.32 6.80 -193.02 -1.31 -11.63 16 10 C -0.01 -0.15 12.17 130.71 1.59 1.44 16 11 S 0.29 3.22 21.77 -56.49 -1.23 1.99 16 12 C -0.16 -3.37 6.04 24.99 0.15 -3.22 16 13 C -0.11 -2.22 5.33 -11.54 -0.06 -2.28 16 14 C -0.16 -1.88 10.03 30.62 0.31 -1.57 16 15 C -0.15 -2.16 10.24 30.62 0.31 -1.85 16 16 C 0.09 2.77 5.97 86.37 0.52 3.28 16 17 C -0.14 -5.03 5.66 30.67 0.17 -4.85 16 18 C 0.18 7.11 2.19 45.01 0.10 7.20 16 19 H 0.05 1.88 8.08 -2.38 -0.02 1.86 16 20 N -0.75 -35.22 4.21 -322.81 -1.36 -36.58 16 21 C -0.22 -12.48 10.41 84.03 0.87 -11.61 16 22 H 0.06 3.68 8.06 -2.91 -0.02 3.65 16 23 C -0.06 -3.72 5.50 84.86 0.47 -3.26 16 24 N -0.98 -63.55 13.97 21.65 0.30 -63.25 16 25 Si 0.95 46.49 27.74 68.60 1.90 48.40 16 26 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 27 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 28 H -0.25 -11.35 6.52 99.48 0.65 -10.70 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.07 1.82 8.14 -2.38 -0.02 1.81 16 31 H 0.04 1.60 7.36 -2.39 -0.02 1.58 16 32 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.09 2.68 7.00 -2.39 -0.02 2.66 16 34 H 0.24 1.35 8.06 -2.91 -0.02 1.33 16 35 H 0.12 2.97 6.33 -2.39 -0.02 2.95 16 36 H 0.11 0.95 7.28 -2.39 -0.02 0.93 16 37 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.15 4.14 4.11 -40.61 -0.17 3.97 16 41 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.36 16.78 5.37 -92.71 -0.50 16.28 16 45 H 0.26 15.83 8.31 -92.70 -0.77 15.06 16 Total: -1.00 -74.40 368.12 2.57 -71.83 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.30 Total: 30.13 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 6.47 Total: -0.79 kcal Atomic # 7 Polarization: -127.27 SS G_CDS: -4.82 Total: -132.09 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.06 Total: -19.46 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.90 Total: 48.40 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -1.23 Total: 1.99 kcal Total: -74.40 2.57 -71.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036194321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.397 kcal (2) G-P(sol) polarization free energy of solvation -74.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds