Wall clock time and date at job start Tue Mar 31 2020 19:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.49369 * 2 1 4 4 C 1.53196 * 109.49745 * 239.93796 * 2 1 3 5 5 N 1.46931 * 108.77068 * 185.41387 * 4 2 1 6 6 C 1.34783 * 120.62620 * 233.58363 * 5 4 2 7 7 O 1.21625 * 119.99824 * 184.63606 * 6 5 4 8 8 C 1.47269 * 120.00176 * 4.35861 * 6 5 4 9 9 N 1.33565 * 123.13925 * 354.08229 * 8 6 5 10 10 C 1.28642 * 115.76094 * 179.97438 * 9 8 6 11 11 S 1.70764 * 110.56444 * 359.97438 * 10 9 8 12 12 C 1.35206 * 123.14197 * 173.78717 * 8 6 5 13 13 C 1.50701 * 125.58535 * 0.02562 * 12 8 6 14 14 C 1.52996 * 117.49657 * 188.62237 * 13 12 8 15 15 C 1.52997 * 117.49954 * 119.99837 * 13 12 8 16 16 C 1.46921 * 118.74279 * 53.86041 * 5 4 2 17 17 C 1.53624 * 108.54155 * 306.09276 * 16 5 4 18 18 C 1.53037 * 109.49852 * 120.09825 * 2 1 3 19 19 H 1.09004 * 109.46186 * 61.31244 * 18 2 1 20 20 N 1.46503 * 109.46157 * 301.33905 * 18 2 1 21 21 C 1.36929 * 120.00258 * 154.99869 * 20 18 2 22 22 H 1.08004 * 119.99856 * 0.02562 * 21 20 18 23 23 C 1.38811 * 120.00300 * 180.02562 * 21 20 18 24 24 N 1.31623 * 120.00475 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99947 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.47039 * 90.00301 * 25 23 21 27 27 H 1.48495 * 109.47378 * 210.00550 * 25 23 21 28 28 H 1.48505 * 109.47227 * 330.00697 * 25 23 21 29 29 H 1.09003 * 109.46796 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47556 * 300.06376 * 1 2 3 31 31 H 1.09004 * 109.47058 * 60.06305 * 1 2 3 32 32 H 1.09001 * 109.58697 * 65.62598 * 4 2 1 33 33 H 1.08998 * 109.70279 * 305.26772 * 4 2 1 34 34 H 1.08011 * 124.71693 * 179.97438 * 10 9 8 35 35 H 1.09005 * 115.54723 * 334.33306 * 13 12 8 36 36 H 1.08991 * 117.50252 * 0.02562 * 14 13 12 37 37 H 1.09004 * 117.49869 * 145.02144 * 14 13 12 38 38 H 1.08997 * 117.50318 * 214.98084 * 15 13 12 39 39 H 1.09005 * 117.49826 * 0.02562 * 15 13 12 40 40 H 1.08998 * 109.58667 * 65.92267 * 16 5 4 41 41 H 1.08993 * 109.58833 * 186.35032 * 16 5 4 42 42 H 1.08997 * 109.63697 * 294.86312 * 17 16 5 43 43 H 1.09003 * 109.45722 * 174.74041 * 17 16 5 44 44 H 0.97006 * 119.99554 * 335.00251 * 20 18 2 45 45 H 0.96995 * 120.00075 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2499 5 7 3.5046 -0.8287 -1.1698 6 6 4.2811 -0.3856 -2.1784 7 8 5.4850 -0.5543 -2.1383 8 6 3.6713 0.2973 -3.3319 9 7 2.3510 0.4102 -3.4993 10 6 1.9731 1.0356 -4.5580 11 16 3.3251 1.5529 -5.4638 12 6 4.3957 0.8737 -4.3174 13 6 5.9004 0.9093 -4.3936 14 6 6.5321 1.7819 -5.4801 15 6 6.5617 0.2577 -5.6097 16 6 4.1051 -1.4317 0.0279 17 6 3.5708 -0.6953 1.2658 18 6 2.0408 -0.7234 1.2481 19 1 1.6969 -1.7577 1.2346 20 7 1.5265 -0.0537 2.4453 21 6 1.3964 -0.7503 3.6170 22 1 1.6733 -1.7934 3.6586 23 6 0.9086 -0.1159 4.7512 24 7 0.7840 -0.7853 5.8776 25 14 0.4303 1.6884 4.6793 26 1 -1.0009 1.8064 4.3007 27 1 0.6430 2.3104 6.0108 28 1 1.2683 2.3829 3.6690 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5148 0.8894 31 1 -0.3633 0.5129 -0.8906 32 1 1.7637 -0.1572 -2.1390 33 1 1.6054 -1.7211 -1.3011 34 1 0.9438 1.2093 -4.8354 35 1 6.4213 0.8378 -3.4388 36 1 5.8595 2.3305 -6.1393 37 1 7.4689 2.2849 -5.2401 38 1 7.5179 -0.2422 -5.4551 39 1 5.9085 -0.1965 -6.3548 40 1 3.8339 -2.4861 0.0813 41 1 5.1896 -1.3331 -0.0179 42 1 3.9158 0.3385 1.2542 43 1 3.9334 -1.1898 2.1670 44 1 1.2781 0.8832 2.4079 45 1 0.4428 -0.3421 6.6700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036194331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:39 Heat of formation + Delta-G solvation = 46.352259 kcal Electronic energy + Delta-G solvation = -27164.059805 eV Core-core repulsion = 23502.368927 eV Total energy + Delta-G solvation = -3661.690878 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.01003 -40.16786 -39.00255 -38.18614 -36.26360 -34.26796 -33.30517 -31.96077 -31.36740 -27.89645 -27.24530 -26.49321 -24.55120 -23.40254 -23.26540 -23.00642 -22.42018 -21.31627 -20.21510 -19.47437 -19.09733 -17.63901 -17.32618 -16.74304 -16.67058 -16.53376 -16.05267 -15.67943 -15.41860 -15.25019 -15.15796 -14.87557 -14.61309 -14.47012 -14.09210 -13.82659 -13.45518 -13.18413 -13.10619 -12.96137 -12.91886 -12.70445 -12.55231 -12.45229 -12.17468 -12.09434 -12.00014 -11.86272 -11.78389 -11.62256 -11.34307 -10.96279 -10.95818 -10.28597 -9.98613 -9.96738 -9.58658 -9.28550 -8.02188 -5.34585 -0.52364 0.20614 0.59127 0.88745 1.35487 1.38439 1.45515 2.00575 2.22623 2.47421 2.90058 3.04018 3.28406 3.40421 3.54305 3.70236 3.79586 3.91865 4.02124 4.07009 4.13598 4.17454 4.27954 4.31863 4.49602 4.54447 4.59821 4.65293 4.68265 4.74112 4.84055 4.93915 4.94993 5.02473 5.12659 5.15023 5.16444 5.24290 5.31547 5.38990 5.54320 5.76839 5.78028 6.21997 6.26696 6.49029 7.05122 7.07483 7.83784 8.03970 9.19654 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020105 B = 0.002993 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.346956 B = 9354.190466 C = 9918.683131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.098 4.098 3 H 0.058 0.942 4 C 0.063 3.937 5 N -0.591 5.591 6 C 0.582 3.418 7 O -0.568 6.568 8 C -0.024 4.024 9 N -0.453 5.453 10 C -0.006 4.006 11 S 0.294 5.706 12 C -0.166 4.166 13 C -0.115 4.115 14 C -0.156 4.156 15 C -0.155 4.155 16 C 0.119 3.881 17 C -0.138 4.138 18 C 0.181 3.819 19 H 0.044 0.956 20 N -0.746 5.746 21 C -0.222 4.222 22 H 0.056 0.944 23 C -0.064 4.064 24 N -0.985 5.985 25 Si 0.952 3.048 26 H -0.274 1.274 27 H -0.298 1.298 28 H -0.259 1.259 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.078 0.922 32 H 0.183 0.817 33 H 0.062 0.938 34 H 0.247 0.753 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.047 0.953 43 H 0.058 0.942 44 H 0.363 0.637 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.989 7.484 -33.387 34.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.119 4.119 3 H 0.076 0.924 4 C -0.060 4.060 5 N -0.321 5.321 6 C 0.370 3.630 7 O -0.449 6.449 8 C -0.157 4.157 9 N -0.168 5.168 10 C -0.303 4.303 11 S 0.552 5.448 12 C -0.290 4.290 13 C -0.136 4.136 14 C -0.194 4.194 15 C -0.192 4.192 16 C -0.004 4.004 17 C -0.179 4.179 18 C 0.073 3.927 19 H 0.062 0.938 20 N -0.388 5.388 21 C -0.353 4.353 22 H 0.074 0.926 23 C -0.255 4.255 24 N -0.636 5.636 25 Si 0.780 3.220 26 H -0.200 1.200 27 H -0.225 1.225 28 H -0.184 1.184 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.197 0.803 33 H 0.081 0.919 34 H 0.262 0.738 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.196 0.804 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.247 7.538 -33.778 35.005 hybrid contribution 0.087 0.031 2.373 2.375 sum 5.334 7.570 -31.405 32.742 Atomic orbital electron populations 1.21592 0.93272 1.02115 1.01753 1.21623 0.97154 0.99033 0.94040 0.92399 1.23595 0.76898 1.02653 1.02826 1.48053 1.08457 1.58418 1.17132 1.17550 0.85578 0.78033 0.81853 1.90705 1.14945 1.59269 1.79947 1.20060 0.88913 1.07749 0.98980 1.66272 1.12462 1.18217 1.19803 1.29295 1.07471 0.99769 0.93813 1.82459 0.93464 1.48187 1.20739 1.25036 1.01720 1.02737 0.99527 1.20533 0.86796 1.09183 0.97041 1.23286 1.03467 0.93400 0.99216 1.23163 1.02654 0.96092 0.97338 1.21653 0.98698 0.96827 0.83211 1.22495 0.98865 0.99805 0.96731 1.20441 0.90997 0.95588 0.85660 0.93830 1.42767 1.78409 1.10063 1.07553 1.19004 1.34009 0.94564 0.87750 0.92579 1.25439 1.02575 1.02275 0.95232 1.69879 1.54388 1.37814 1.01517 0.85451 0.78761 0.81065 0.76739 1.20033 1.22459 1.18375 0.92781 0.93952 0.90277 0.80255 0.91946 0.73753 0.86882 0.86880 0.86661 0.87568 0.87553 0.90694 0.89987 0.93392 0.92371 0.80369 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 9.02 71.98 0.65 -3.12 16 2 C -0.10 -3.14 2.46 -10.72 -0.03 -3.16 16 3 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 4 C 0.06 1.76 5.57 86.36 0.48 2.24 16 5 N -0.59 -18.51 2.97 -822.11 -2.44 -20.95 16 6 C 0.58 18.48 7.66 86.62 0.66 19.14 16 7 O -0.57 -20.38 13.67 -4.11 -0.06 -20.44 16 8 C -0.02 -0.60 6.56 40.56 0.27 -0.33 16 9 N -0.45 -9.06 6.63 -193.02 -1.28 -10.34 16 10 C -0.01 -0.07 12.17 130.71 1.59 1.52 16 11 S 0.29 2.77 21.77 -56.49 -1.23 1.55 16 12 C -0.17 -3.24 6.04 24.99 0.15 -3.09 16 13 C -0.11 -2.24 5.34 -11.54 -0.06 -2.30 16 14 C -0.16 -1.82 10.03 30.59 0.31 -1.52 16 15 C -0.15 -2.16 10.23 30.59 0.31 -1.85 16 16 C 0.12 3.94 6.45 86.51 0.56 4.50 16 17 C -0.14 -5.25 5.67 30.82 0.17 -5.08 16 18 C 0.18 7.17 2.19 45.02 0.10 7.27 16 19 H 0.04 1.83 8.08 -2.39 -0.02 1.81 16 20 N -0.75 -35.55 4.22 -322.81 -1.36 -36.91 16 21 C -0.22 -12.84 10.41 84.03 0.87 -11.97 16 22 H 0.06 3.56 8.06 -2.91 -0.02 3.53 16 23 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 24 N -0.98 -64.18 13.97 21.65 0.30 -63.88 16 25 Si 0.95 46.59 27.73 68.60 1.90 48.49 16 26 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 27 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 28 H -0.26 -11.69 6.52 99.48 0.65 -11.04 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.04 1.41 7.36 -2.39 -0.02 1.40 16 31 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.18 4.48 3.44 -88.91 -0.31 4.17 16 33 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.25 0.50 8.06 -2.90 -0.02 0.48 16 35 H 0.11 2.97 6.31 -2.38 -0.02 2.95 16 36 H 0.11 0.89 7.28 -2.39 -0.02 0.87 16 37 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.08 2.77 7.03 -2.39 -0.02 2.75 16 42 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.36 16.86 5.37 -92.70 -0.50 16.36 16 45 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -76.70 367.71 2.51 -74.19 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: 0.16 Total: 29.41 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 6.51 Total: -1.11 kcal Atomic # 7 Polarization: -127.31 SS G_CDS: -4.78 Total: -132.08 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.06 Total: -20.44 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.90 Total: 48.49 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -1.23 Total: 1.55 kcal Total: -76.70 2.51 -74.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036194331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.542 kcal (2) G-P(sol) polarization free energy of solvation -76.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds