Wall clock time and date at job start Tue Mar 31 2020 19:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.49445 * 2 1 4 4 C 1.53194 * 109.49722 * 120.06539 * 2 1 3 5 5 N 1.46934 * 108.77072 * 174.58903 * 4 2 1 6 6 C 1.34773 * 120.63029 * 126.36978 * 5 4 2 7 7 O 1.21687 * 120.00064 * 4.36037 * 6 5 4 8 8 C 1.46680 * 120.00147 * 184.35917 * 6 5 4 9 9 S 1.76215 * 126.12996 * 310.66032 * 8 6 5 10 10 C 1.70958 * 90.31464 * 180.02562 * 9 8 6 11 11 N 1.29431 * 110.38826 * 0.02562 * 10 9 8 12 12 C 1.30939 * 117.36877 * 359.97438 * 11 10 9 13 13 C 1.50695 * 122.90986 * 179.97438 * 12 11 10 14 14 C 1.53005 * 117.49653 * 8.77553 * 13 12 11 15 15 C 1.52997 * 117.50005 * 300.11640 * 13 12 11 16 16 C 1.46921 * 118.73610 * 306.63800 * 5 4 2 17 17 C 1.52763 * 109.00999 * 53.31431 * 16 5 4 18 18 C 1.53036 * 109.38169 * 305.58688 * 17 16 5 19 19 H 1.09000 * 109.46346 * 301.21834 * 18 17 16 20 20 N 1.46501 * 109.45891 * 181.25819 * 18 17 16 21 21 C 1.36935 * 119.99873 * 84.93461 * 20 18 17 22 22 H 1.07998 * 120.00124 * 359.97438 * 21 20 18 23 23 C 1.38812 * 119.99968 * 179.97438 * 21 20 18 24 24 N 1.31623 * 119.99835 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00152 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47303 * 89.99778 * 25 23 21 27 27 H 1.48495 * 109.47368 * 210.00032 * 25 23 21 28 28 H 1.48504 * 109.46915 * 330.00119 * 25 23 21 29 29 H 1.08998 * 109.47101 * 299.92967 * 1 2 3 30 30 H 1.08997 * 109.47649 * 59.93210 * 1 2 3 31 31 H 1.08998 * 109.47285 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.59186 * 54.80254 * 4 2 1 33 33 H 1.08998 * 109.58692 * 294.37124 * 4 2 1 34 34 H 1.08001 * 124.80320 * 180.02562 * 10 9 8 35 35 H 1.09003 * 115.55537 * 154.44146 * 13 12 11 36 36 H 1.09002 * 117.49662 * 359.97438 * 14 13 12 37 37 H 1.09000 * 117.50041 * 145.01801 * 14 13 12 38 38 H 1.08999 * 117.50548 * 214.97627 * 15 13 12 39 39 H 1.09008 * 117.49847 * 359.97116 * 15 13 12 40 40 H 1.08999 * 109.58489 * 173.14958 * 16 5 4 41 41 H 1.09000 * 109.59033 * 293.57605 * 16 5 4 42 42 H 1.09000 * 109.56661 * 185.54985 * 17 16 5 43 43 H 1.09001 * 109.35914 * 65.49819 * 17 16 5 44 44 H 0.96999 * 120.00336 * 264.92924 * 20 18 17 45 45 H 0.97003 * 119.99526 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7235 1.2498 5 7 3.5047 -0.8287 1.1697 6 6 4.2812 -0.3849 2.1779 7 8 3.7707 0.0355 3.1994 8 6 5.7417 -0.4086 2.0439 9 16 6.7147 -1.7810 1.5195 10 6 8.1383 -0.8509 1.6955 11 7 7.8494 0.3427 2.1042 12 6 6.5856 0.6217 2.3025 13 6 6.1095 1.9702 2.7777 14 6 7.1374 3.1020 2.8358 15 6 6.6256 2.4652 4.1303 16 6 4.1055 -1.4215 -0.0328 17 6 3.5708 -0.6953 -1.2659 18 6 2.0408 -0.7234 -1.2481 19 1 1.6966 -1.7576 -1.2348 20 7 1.5264 -0.0536 -2.4453 21 6 1.3963 -0.7503 -3.6170 22 1 1.6731 -1.7933 -3.6587 23 6 0.9084 -0.1158 -4.7511 24 7 0.7838 -0.7853 -5.8775 25 14 0.4288 1.6881 -4.6789 26 1 1.6060 2.5273 -5.0186 27 1 -0.6626 1.9495 -5.6512 28 1 -0.0380 2.0217 -3.3091 29 1 -0.3633 0.5127 0.8906 30 1 -0.3634 0.5149 -0.8893 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6053 -1.7212 1.2985 33 1 1.7638 -0.1573 2.1389 34 1 9.1373 -1.2087 1.4941 35 1 5.0878 2.2319 2.5025 36 1 8.1581 2.8711 2.5306 37 1 6.7919 4.1084 2.5991 38 1 5.9437 3.0529 4.7448 39 1 7.3092 1.8153 4.6766 40 1 5.1895 -1.3159 0.0103 41 1 3.8412 -2.4774 -0.0909 42 1 3.9333 -1.1903 -2.1668 43 1 3.9159 0.3385 -1.2543 44 1 1.2780 0.8833 -2.4079 45 1 0.4425 -0.3420 -6.6699 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036219468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:13 Heat of formation + Delta-G solvation = 55.567755 kcal Electronic energy + Delta-G solvation = -27156.902256 eV Core-core repulsion = 23495.610991 eV Total energy + Delta-G solvation = -3661.291264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.80159 -39.76244 -37.75086 -36.66912 -34.83515 -33.06729 -31.66588 -30.93539 -29.89793 -27.18148 -26.00862 -25.00011 -23.22135 -22.74579 -22.48521 -21.74757 -21.15338 -19.83342 -18.62117 -18.39848 -17.57583 -16.97101 -16.54649 -15.79203 -15.15455 -15.08253 -14.78683 -14.57969 -14.47377 -14.31105 -13.95756 -13.67445 -13.36428 -12.98142 -12.64820 -12.53990 -12.49273 -12.09151 -11.85704 -11.72276 -11.66679 -11.50149 -11.10725 -11.01036 -10.94105 -10.76513 -10.60485 -10.56115 -10.32066 -10.25522 -9.90196 -9.84585 -9.63060 -9.53692 -9.01428 -8.89701 -8.64723 -7.32442 -5.82347 -3.18002 0.09736 0.86981 1.28633 2.24625 2.66881 3.00893 3.33262 3.36647 3.42168 3.72537 3.89546 4.32858 4.53150 4.54326 4.66990 4.84392 4.89883 4.94239 4.97801 5.09474 5.18430 5.27017 5.37486 5.45536 5.50112 5.55167 5.59363 5.62292 5.77178 5.81205 5.89457 5.93615 5.96520 6.02677 6.04626 6.21133 6.22649 6.32720 6.42869 6.62720 6.70557 6.87562 7.24078 7.36887 7.92884 7.97913 8.36723 9.14731 9.87571 10.07319 11.35872 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014464 B = 0.003291 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.440780 B = 8505.734612 C = 8659.400295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.069 0.931 4 C 0.123 3.877 5 N -0.597 5.597 6 C 0.596 3.404 7 O -0.525 6.525 8 C -0.278 4.278 9 S 0.183 5.817 10 C 0.021 3.979 11 N -0.469 5.469 12 C 0.161 3.839 13 C -0.093 4.093 14 C -0.160 4.160 15 C -0.153 4.153 16 C 0.097 3.903 17 C -0.150 4.150 18 C 0.189 3.811 19 H 0.058 0.942 20 N -0.744 5.744 21 C -0.243 4.243 22 H 0.090 0.910 23 C 0.007 3.993 24 N -0.933 5.933 25 Si 0.882 3.118 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.277 1.277 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.205 0.795 35 H 0.122 0.878 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.059 0.941 44 H 0.361 0.639 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.004 -0.008 18.488 22.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 H 0.087 0.913 4 C 0.001 3.999 5 N -0.329 5.329 6 C 0.381 3.619 7 O -0.403 6.403 8 C -0.402 4.402 9 S 0.439 5.561 10 C -0.275 4.275 11 N -0.182 5.182 12 C 0.025 3.975 13 C -0.114 4.114 14 C -0.198 4.198 15 C -0.191 4.191 16 C -0.027 4.027 17 C -0.191 4.191 18 C 0.079 3.921 19 H 0.076 0.924 20 N -0.386 5.386 21 C -0.373 4.373 22 H 0.108 0.892 23 C -0.189 4.189 24 N -0.581 5.581 25 Si 0.712 3.288 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.203 1.203 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.222 0.778 35 H 0.140 0.860 36 H 0.124 0.876 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.194 0.806 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.995 -0.701 18.569 22.675 hybrid contribution -0.412 1.941 -0.124 1.988 sum 12.583 1.240 18.444 22.362 Atomic orbital electron populations 1.21669 0.93917 1.02236 1.01678 1.21803 0.96728 1.00068 0.94835 0.91252 1.21755 0.77556 1.01304 0.99311 1.48059 1.07284 1.59840 1.17740 1.16739 0.83783 0.77950 0.83395 1.90822 1.73899 1.47207 1.28391 1.25356 0.99345 0.98971 1.16510 1.84144 0.98225 1.15250 1.58511 1.28708 1.04504 0.92547 1.01695 1.65923 1.18724 1.18159 1.15372 1.19540 0.85979 0.95328 0.96692 1.20507 0.99291 0.89071 1.02489 1.23012 0.99414 0.96352 1.00990 1.22923 1.03102 1.02984 0.90061 1.22081 0.97966 0.97870 0.84737 1.22566 0.99975 1.00520 0.96079 1.20166 0.90364 0.96118 0.85433 0.92386 1.42763 1.78031 1.10231 1.07599 1.19043 1.36509 0.95822 0.85941 0.89177 1.24651 1.01267 0.97398 0.95610 1.69698 1.52007 1.35707 1.00638 0.86598 0.78259 0.86847 0.77075 1.21162 1.21748 1.20300 0.93500 0.91305 0.92479 0.90955 0.89036 0.77806 0.86011 0.87611 0.88377 0.88120 0.88711 0.90469 0.90677 0.89807 0.92259 0.80599 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.02 37.16 0.34 -1.68 16 2 C -0.11 -1.72 2.46 -90.50 -0.22 -1.94 16 3 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.12 1.65 5.71 -3.71 -0.02 1.63 16 5 N -0.60 -8.16 2.98 -174.57 -0.52 -8.68 16 6 C 0.60 8.72 7.02 -12.85 -0.09 8.62 16 7 O -0.53 -8.94 15.95 5.20 0.08 -8.85 16 8 C -0.28 -3.58 5.35 -37.09 -0.20 -3.78 16 9 S 0.18 1.70 20.40 -107.50 -2.19 -0.50 16 10 C 0.02 0.18 12.22 51.75 0.63 0.82 16 11 N -0.47 -5.44 9.81 -11.53 -0.11 -5.55 16 12 C 0.16 2.07 6.41 -83.89 -0.54 1.53 16 13 C -0.09 -1.14 5.49 -91.77 -0.50 -1.64 16 14 C -0.16 -1.62 10.09 -26.69 -0.27 -1.88 16 15 C -0.15 -1.58 10.24 -26.69 -0.27 -1.85 16 16 C 0.10 1.25 5.95 -3.93 -0.02 1.22 16 17 C -0.15 -2.38 5.64 -26.83 -0.15 -2.53 16 18 C 0.19 3.32 2.19 -67.89 -0.15 3.17 16 19 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 20 N -0.74 -16.45 4.22 -53.39 -0.23 -16.68 16 21 C -0.24 -6.48 10.41 -15.06 -0.16 -6.64 16 22 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 23 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 24 N -0.93 -28.50 13.97 55.49 0.78 -27.73 16 25 Si 0.88 21.59 27.73 -169.99 -4.71 16.87 16 26 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.17 7.36 -51.93 -0.38 0.79 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 1.26 7.03 -51.93 -0.36 0.89 16 34 H 0.21 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.12 1.60 7.70 -51.93 -0.40 1.20 16 36 H 0.11 1.10 7.74 -51.93 -0.40 0.69 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.09 0.99 8.14 -51.92 -0.42 0.56 16 40 H 0.08 0.90 4.24 -36.09 -0.15 0.75 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.36 8.03 5.37 -40.82 -0.22 7.81 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 372.87 15.07 5.62 5.62 Total: -1.00 -32.28 372.87 -9.60 -41.88 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -6.58 Total: 8.47 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -1.73 Total: -4.86 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -0.08 Total: -58.63 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.08 Total: -8.85 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.87 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.19 Total: -0.50 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.28 -9.60 -41.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036219468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.447 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds