Wall clock time and date at job start Tue Mar 31 2020 19:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.49445 * 2 1 4 4 C 1.53194 * 109.49722 * 120.06539 * 2 1 3 5 5 N 1.46934 * 108.77072 * 174.58903 * 4 2 1 6 6 C 1.34773 * 120.63029 * 126.36978 * 5 4 2 7 7 O 1.21687 * 120.00064 * 4.36037 * 6 5 4 8 8 C 1.46680 * 120.00147 * 184.35917 * 6 5 4 9 9 S 1.76215 * 126.12996 * 310.66032 * 8 6 5 10 10 C 1.70958 * 90.31464 * 180.02562 * 9 8 6 11 11 N 1.29431 * 110.38826 * 0.02562 * 10 9 8 12 12 C 1.30939 * 117.36877 * 359.97438 * 11 10 9 13 13 C 1.50695 * 122.90986 * 179.97438 * 12 11 10 14 14 C 1.53005 * 117.49653 * 8.77553 * 13 12 11 15 15 C 1.52997 * 117.50005 * 300.11640 * 13 12 11 16 16 C 1.46921 * 118.73610 * 306.63800 * 5 4 2 17 17 C 1.52763 * 109.00999 * 53.31431 * 16 5 4 18 18 C 1.53036 * 109.38169 * 305.58688 * 17 16 5 19 19 H 1.09000 * 109.46346 * 301.21834 * 18 17 16 20 20 N 1.46501 * 109.45891 * 181.25819 * 18 17 16 21 21 C 1.36935 * 119.99873 * 84.93461 * 20 18 17 22 22 H 1.07998 * 120.00124 * 359.97438 * 21 20 18 23 23 C 1.38812 * 119.99968 * 179.97438 * 21 20 18 24 24 N 1.31623 * 119.99835 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00152 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47303 * 89.99778 * 25 23 21 27 27 H 1.48495 * 109.47368 * 210.00032 * 25 23 21 28 28 H 1.48504 * 109.46915 * 330.00119 * 25 23 21 29 29 H 1.08998 * 109.47101 * 299.92967 * 1 2 3 30 30 H 1.08997 * 109.47649 * 59.93210 * 1 2 3 31 31 H 1.08998 * 109.47285 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.59186 * 54.80254 * 4 2 1 33 33 H 1.08998 * 109.58692 * 294.37124 * 4 2 1 34 34 H 1.08001 * 124.80320 * 180.02562 * 10 9 8 35 35 H 1.09003 * 115.55537 * 154.44146 * 13 12 11 36 36 H 1.09002 * 117.49662 * 359.97438 * 14 13 12 37 37 H 1.09000 * 117.50041 * 145.01801 * 14 13 12 38 38 H 1.08999 * 117.50548 * 214.97627 * 15 13 12 39 39 H 1.09008 * 117.49847 * 359.97116 * 15 13 12 40 40 H 1.08999 * 109.58489 * 173.14958 * 16 5 4 41 41 H 1.09000 * 109.59033 * 293.57605 * 16 5 4 42 42 H 1.09000 * 109.56661 * 185.54985 * 17 16 5 43 43 H 1.09001 * 109.35914 * 65.49819 * 17 16 5 44 44 H 0.96999 * 120.00336 * 264.92924 * 20 18 17 45 45 H 0.97003 * 119.99526 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7235 1.2498 5 7 3.5047 -0.8287 1.1697 6 6 4.2812 -0.3849 2.1779 7 8 3.7707 0.0355 3.1994 8 6 5.7417 -0.4086 2.0439 9 16 6.7147 -1.7810 1.5195 10 6 8.1383 -0.8509 1.6955 11 7 7.8494 0.3427 2.1042 12 6 6.5856 0.6217 2.3025 13 6 6.1095 1.9702 2.7777 14 6 7.1374 3.1020 2.8358 15 6 6.6256 2.4652 4.1303 16 6 4.1055 -1.4215 -0.0328 17 6 3.5708 -0.6953 -1.2659 18 6 2.0408 -0.7234 -1.2481 19 1 1.6966 -1.7576 -1.2348 20 7 1.5264 -0.0536 -2.4453 21 6 1.3963 -0.7503 -3.6170 22 1 1.6731 -1.7933 -3.6587 23 6 0.9084 -0.1158 -4.7511 24 7 0.7838 -0.7853 -5.8775 25 14 0.4288 1.6881 -4.6789 26 1 1.6060 2.5273 -5.0186 27 1 -0.6626 1.9495 -5.6512 28 1 -0.0380 2.0217 -3.3091 29 1 -0.3633 0.5127 0.8906 30 1 -0.3634 0.5149 -0.8893 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6053 -1.7212 1.2985 33 1 1.7638 -0.1573 2.1389 34 1 9.1373 -1.2087 1.4941 35 1 5.0878 2.2319 2.5025 36 1 8.1581 2.8711 2.5306 37 1 6.7919 4.1084 2.5991 38 1 5.9437 3.0529 4.7448 39 1 7.3092 1.8153 4.6766 40 1 5.1895 -1.3159 0.0103 41 1 3.8412 -2.4774 -0.0909 42 1 3.9333 -1.1903 -2.1668 43 1 3.9159 0.3385 -1.2543 44 1 1.2780 0.8833 -2.4079 45 1 0.4425 -0.3420 -6.6699 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036219468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:12 Heat of formation + Delta-G solvation = 35.559412 kcal Electronic energy + Delta-G solvation = -27157.769883 eV Core-core repulsion = 23495.610991 eV Total energy + Delta-G solvation = -3662.158891 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.77411 -40.78508 -39.03728 -37.48808 -36.34108 -34.58936 -33.31098 -31.90587 -31.48273 -28.19631 -27.20841 -26.31745 -24.32401 -24.03131 -23.27912 -23.09022 -22.29051 -21.19283 -19.75643 -19.37272 -19.21796 -17.96054 -17.60913 -16.87394 -16.63116 -16.14821 -16.05793 -15.76419 -15.44615 -15.33915 -15.19046 -14.92500 -14.86503 -14.42698 -14.11348 -13.75802 -13.54554 -13.42366 -13.12301 -12.96529 -12.88906 -12.61292 -12.44820 -12.43496 -12.17599 -12.06897 -11.90598 -11.80871 -11.76243 -11.39238 -11.35402 -11.22207 -10.96824 -10.75279 -10.38321 -9.86681 -9.66957 -9.27635 -8.00107 -5.32081 -0.71761 0.06645 0.51491 1.36888 1.37962 1.39176 1.46567 1.63544 1.96903 2.49075 2.92494 3.11516 3.31245 3.34819 3.50899 3.66005 3.76452 3.86916 3.91982 3.97319 4.07285 4.17909 4.19862 4.28930 4.39819 4.46701 4.54179 4.68991 4.72120 4.72485 4.77367 4.81019 4.87453 4.96963 4.99192 5.10354 5.12484 5.21080 5.23759 5.34490 5.40169 5.54775 5.80269 6.16527 6.24045 6.55029 6.88966 7.09939 7.86528 8.04779 9.21354 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014464 B = 0.003291 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.440780 B = 8505.734612 C = 8659.400295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 H 0.062 0.938 4 C 0.127 3.873 5 N -0.598 5.598 6 C 0.598 3.402 7 O -0.556 6.556 8 C -0.319 4.319 9 S 0.224 5.776 10 C 0.037 3.963 11 N -0.493 5.493 12 C 0.158 3.842 13 C -0.118 4.118 14 C -0.146 4.146 15 C -0.146 4.146 16 C 0.105 3.895 17 C -0.141 4.141 18 C 0.183 3.817 19 H 0.054 0.946 20 N -0.747 5.747 21 C -0.218 4.218 22 H 0.063 0.937 23 C -0.061 4.061 24 N -0.983 5.983 25 Si 0.944 3.056 26 H -0.284 1.284 27 H -0.299 1.299 28 H -0.253 1.253 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.246 0.754 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.069 0.931 43 H 0.050 0.950 44 H 0.362 0.638 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.474 0.180 20.283 24.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.124 4.124 3 H 0.080 0.920 4 C 0.005 3.995 5 N -0.329 5.329 6 C 0.385 3.615 7 O -0.436 6.436 8 C -0.443 4.443 9 S 0.480 5.520 10 C -0.258 4.258 11 N -0.206 5.206 12 C 0.020 3.980 13 C -0.139 4.139 14 C -0.184 4.184 15 C -0.184 4.184 16 C -0.018 4.018 17 C -0.182 4.182 18 C 0.075 3.925 19 H 0.072 0.928 20 N -0.389 5.389 21 C -0.349 4.349 22 H 0.081 0.919 23 C -0.252 4.252 24 N -0.634 5.634 25 Si 0.773 3.227 26 H -0.211 1.211 27 H -0.226 1.226 28 H -0.178 1.178 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.262 0.738 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.195 0.805 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.485 -0.526 20.420 25.041 hybrid contribution -0.760 1.773 -0.627 2.028 sum 13.725 1.247 19.793 24.118 Atomic orbital electron populations 1.21632 0.93401 1.02523 1.01639 1.21674 0.97098 0.99449 0.94158 0.91972 1.21715 0.77671 1.01962 0.98125 1.48090 1.07339 1.59738 1.17730 1.16953 0.84611 0.77048 0.82930 1.90790 1.74783 1.48504 1.29565 1.25296 0.98771 1.01055 1.19159 1.83934 0.97297 1.13177 1.57552 1.29471 1.06052 0.91458 0.98781 1.65981 1.18058 1.19538 1.17044 1.19691 0.86597 0.95467 0.96205 1.20535 0.99067 0.90078 1.04226 1.23041 0.98702 0.96294 1.00322 1.22968 1.02929 1.02724 0.89769 1.22054 0.98719 0.98180 0.82859 1.22364 0.98391 1.00310 0.97166 1.20400 0.91415 0.95806 0.84873 0.92823 1.42782 1.78327 1.10201 1.07602 1.19011 1.33818 0.94809 0.87293 0.91861 1.25358 1.02686 1.01720 0.95431 1.69863 1.54465 1.37620 1.01487 0.85567 0.77542 0.81690 0.77913 1.21073 1.22598 1.17803 0.91152 0.93679 0.92057 0.89310 0.89011 0.73765 0.87743 0.87743 0.87039 0.87125 0.88842 0.89027 0.88859 0.91242 0.93165 0.80479 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.72 9.02 71.98 0.65 -3.07 16 2 C -0.10 -2.99 2.46 -10.72 -0.03 -3.01 16 3 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 4 C 0.13 3.21 5.71 86.36 0.49 3.71 16 5 N -0.60 -15.46 2.98 -824.45 -2.46 -17.92 16 6 C 0.60 16.94 7.02 86.45 0.61 17.55 16 7 O -0.56 -18.76 15.95 -4.31 -0.07 -18.82 16 8 C -0.32 -7.81 5.35 23.88 0.13 -7.68 16 9 S 0.22 3.55 20.40 -56.49 -1.15 2.40 16 10 C 0.04 0.53 12.22 130.60 1.60 2.12 16 11 N -0.49 -10.41 9.81 -190.40 -1.87 -12.28 16 12 C 0.16 3.88 6.41 42.09 0.27 4.15 16 13 C -0.12 -2.84 5.49 -11.54 -0.06 -2.91 16 14 C -0.15 -2.78 10.09 30.62 0.31 -2.47 16 15 C -0.15 -2.88 10.24 30.62 0.31 -2.57 16 16 C 0.11 2.51 5.95 86.22 0.51 3.02 16 17 C -0.14 -4.37 5.64 30.53 0.17 -4.19 16 18 C 0.18 6.30 2.19 45.02 0.10 6.40 16 19 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 20 N -0.75 -32.72 4.22 -322.82 -1.36 -34.08 16 21 C -0.22 -11.77 10.41 84.03 0.87 -10.89 16 22 H 0.06 3.71 8.06 -2.91 -0.02 3.68 16 23 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 24 N -0.98 -61.68 13.97 21.65 0.30 -61.38 16 25 Si 0.94 44.90 27.73 68.60 1.90 46.80 16 26 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 27 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 28 H -0.25 -10.90 6.52 99.48 0.65 -10.25 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16 30 H 0.04 1.47 7.36 -2.39 -0.02 1.45 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.09 2.38 7.03 -2.39 -0.02 2.36 16 34 H 0.25 1.20 8.06 -2.91 -0.02 1.17 16 35 H 0.10 2.81 7.70 -2.39 -0.02 2.79 16 36 H 0.10 2.02 7.74 -2.39 -0.02 2.00 16 37 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.09 1.95 4.24 -12.46 -0.05 1.90 16 41 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.36 15.73 5.37 -92.71 -0.50 15.23 16 45 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -71.48 372.87 2.11 -69.37 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 0.41 Total: 28.75 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 6.40 Total: -2.84 kcal Atomic # 7 Polarization: -120.27 SS G_CDS: -5.38 Total: -125.65 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.07 Total: -18.82 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.90 Total: 46.80 kcal Atomic # 16 Polarization: 3.55 SS G_CDS: -1.15 Total: 2.40 kcal Total: -71.48 2.11 -69.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036219468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.931 kcal (2) G-P(sol) polarization free energy of solvation -71.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds