Wall clock time and date at job start Tue Mar 31 2020 19:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.49516 * 2 1 4 4 C 1.53186 * 109.52368 * 239.91929 * 2 1 3 5 5 N 1.46928 * 108.77339 * 185.39729 * 4 2 1 6 6 C 1.34775 * 120.62922 * 233.60521 * 5 4 2 7 7 O 1.21689 * 120.00253 * 355.68689 * 6 5 4 8 8 C 1.46687 * 119.99991 * 175.67367 * 6 5 4 9 9 S 1.76213 * 126.12652 * 49.25239 * 8 6 5 10 10 C 1.70957 * 90.31405 * 179.97438 * 9 8 6 11 11 N 1.29426 * 110.38765 * 0.34279 * 10 9 8 12 12 C 1.30949 * 117.36729 * 359.72993 * 11 10 9 13 13 C 1.50703 * 122.90473 * 179.97438 * 12 11 10 14 14 C 1.52999 * 117.49654 * 8.62070 * 13 12 11 15 15 C 1.52992 * 117.49830 * 299.99821 * 13 12 11 16 16 C 1.46918 * 118.74026 * 53.60781 * 5 4 2 17 17 C 1.53198 * 108.77666 * 306.39153 * 16 5 4 18 18 C 1.53038 * 109.31006 * 54.63523 * 17 16 5 19 19 H 1.09001 * 109.45753 * 178.61429 * 18 17 16 20 20 N 1.46497 * 109.46121 * 58.65556 * 18 17 16 21 21 C 1.36934 * 119.99812 * 84.93247 * 20 18 17 22 22 H 1.08002 * 120.00225 * 359.97438 * 21 20 18 23 23 C 1.38818 * 120.00216 * 180.02562 * 21 20 18 24 24 N 1.31624 * 119.99536 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00252 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47264 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.46983 * 119.99989 * 25 23 21 28 28 H 1.48496 * 109.47084 * 239.99810 * 25 23 21 29 29 H 1.09003 * 109.47416 * 299.99598 * 1 2 3 30 30 H 1.09003 * 109.47312 * 60.00384 * 1 2 3 31 31 H 1.09003 * 109.46914 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.58930 * 305.18165 * 4 2 1 33 33 H 1.08996 * 109.58966 * 65.61246 * 4 2 1 34 34 H 1.07992 * 124.80680 * 180.10556 * 10 9 8 35 35 H 1.08997 * 115.54567 * 154.32715 * 13 12 11 36 36 H 1.08997 * 117.50344 * 0.02562 * 14 13 12 37 37 H 1.09007 * 117.49653 * 145.01983 * 14 13 12 38 38 H 1.09006 * 117.50082 * 214.97847 * 15 13 12 39 39 H 1.09001 * 117.50216 * 359.97438 * 15 13 12 40 40 H 1.09004 * 109.59198 * 186.60535 * 16 5 4 41 41 H 1.08999 * 109.59137 * 66.17989 * 16 5 4 42 42 H 1.08997 * 109.49869 * 294.68229 * 17 16 5 43 43 H 1.09000 * 109.49706 * 174.58846 * 17 16 5 44 44 H 0.97005 * 120.00209 * 264.93212 * 20 18 17 45 45 H 0.97003 * 119.99651 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7237 -1.2493 5 7 3.5053 -0.8283 -1.1689 6 6 4.2819 -0.3849 -2.1773 7 8 3.7715 0.0353 -3.1989 8 6 5.7424 -0.4087 -2.0432 9 16 6.7151 -1.7802 -1.5160 10 6 8.1389 -0.8508 -1.6938 11 7 7.8497 0.3444 -2.0974 12 6 6.5858 0.6233 -2.2962 13 6 6.1093 1.9740 -2.7648 14 6 7.1710 2.9839 -3.2052 15 6 6.4295 3.1815 -1.8816 16 6 4.1059 -1.4254 0.0316 17 6 3.5708 -0.6938 1.2667 18 6 2.0408 -0.7227 1.2486 19 1 1.6577 -0.2242 2.1390 20 7 1.5790 -2.1129 1.2310 21 6 1.4488 -2.8059 2.4049 22 1 1.6870 -2.3278 3.3436 23 6 1.0118 -4.1234 2.3883 24 7 0.7220 -4.7062 1.2442 25 14 0.8349 -5.0690 3.9895 26 1 1.2210 -4.1947 5.1260 27 1 -0.5757 -5.5027 4.1549 28 1 1.7192 -6.2616 3.9603 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6064 -1.7217 -1.2978 33 1 1.7645 -0.1580 -2.1388 34 1 9.1379 -1.2090 -1.4937 35 1 5.1585 1.9782 -3.2976 36 1 8.2140 2.6712 -3.1564 37 1 6.9187 3.6527 -4.0282 38 1 5.6895 3.9805 -1.8336 39 1 6.9844 2.9990 -0.9613 40 1 5.1902 -1.3228 -0.0125 41 1 3.8387 -2.4806 0.0877 42 1 3.9154 0.3402 1.2548 43 1 3.9334 -1.1882 2.1679 44 1 1.3655 -2.5424 0.3879 45 1 0.4163 -5.6267 1.2327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036219471.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:15 Heat of formation + Delta-G solvation = 53.077943 kcal Electronic energy + Delta-G solvation = -27518.908402 eV Core-core repulsion = 23857.509171 eV Total energy + Delta-G solvation = -3661.399231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.65071 -39.62190 -37.64170 -36.59929 -34.35552 -32.95364 -31.48838 -30.76602 -29.22670 -27.00809 -25.81546 -24.79112 -23.53719 -23.08549 -22.44900 -21.72985 -21.19010 -18.99802 -18.27708 -18.08077 -17.38384 -16.71690 -16.42276 -15.52651 -15.19811 -14.78040 -14.67407 -14.56127 -14.26727 -14.12674 -13.97621 -13.49935 -13.33358 -12.89007 -12.57447 -12.48331 -12.29393 -11.69160 -11.62916 -11.59457 -11.46554 -11.25326 -10.97427 -10.91996 -10.84066 -10.58882 -10.54409 -10.49469 -10.20034 -10.09943 -9.89192 -9.74167 -9.59951 -9.35689 -8.98213 -8.78275 -8.32203 -7.02149 -5.83117 -3.11762 0.24187 1.02670 1.45123 2.36873 2.89662 3.22925 3.38342 3.44839 3.46714 3.79733 3.99779 4.48784 4.53806 4.65795 4.76569 4.90399 5.05851 5.12222 5.25474 5.31151 5.38915 5.47806 5.53130 5.53358 5.66227 5.68029 5.76415 5.86478 5.91417 6.00042 6.02248 6.02532 6.10826 6.17900 6.27096 6.34683 6.45260 6.55701 6.63287 6.70602 6.87055 6.94353 7.43876 7.57169 7.65560 8.19682 8.35199 9.47062 10.03083 10.38294 11.39238 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.003598 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.087981 B = 7779.240328 C = 8663.962275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.121 3.879 5 N -0.589 5.589 6 C 0.595 3.405 7 O -0.535 6.535 8 C -0.274 4.274 9 S 0.194 5.806 10 C 0.012 3.988 11 N -0.470 5.470 12 C 0.156 3.844 13 C -0.098 4.098 14 C -0.158 4.158 15 C -0.161 4.161 16 C 0.105 3.895 17 C -0.148 4.148 18 C 0.179 3.821 19 H 0.052 0.948 20 N -0.719 5.719 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.904 3.096 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.054 0.946 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.204 0.796 35 H 0.132 0.868 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.049 0.951 43 H 0.076 0.924 44 H 0.384 0.616 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.656 11.181 -5.837 17.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.085 0.915 4 C -0.001 4.001 5 N -0.320 5.320 6 C 0.380 3.620 7 O -0.414 6.414 8 C -0.398 4.398 9 S 0.450 5.550 10 C -0.283 4.283 11 N -0.183 5.183 12 C 0.019 3.981 13 C -0.119 4.119 14 C -0.195 4.195 15 C -0.198 4.198 16 C -0.018 4.018 17 C -0.189 4.189 18 C 0.068 3.932 19 H 0.070 0.930 20 N -0.361 5.361 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.207 4.207 24 N -0.580 5.580 25 Si 0.735 3.265 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.220 0.780 35 H 0.150 0.850 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.067 0.933 43 H 0.094 0.906 44 H 0.219 0.781 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.653 10.592 -5.929 17.534 hybrid contribution -0.213 -0.220 0.521 0.605 sum 12.439 10.372 -5.408 17.075 Atomic orbital electron populations 1.21665 0.94029 1.03266 1.00522 1.21712 0.96621 0.98885 0.95611 0.91524 1.21724 0.77597 1.01927 0.98851 1.48014 1.07313 1.58916 1.17797 1.16729 0.83709 0.78094 0.83479 1.90787 1.73888 1.48201 1.28488 1.25407 0.99507 0.98941 1.15923 1.84381 0.97754 1.15099 1.57758 1.28685 1.04652 0.92821 1.02127 1.65931 1.18719 1.18301 1.15384 1.19506 0.85987 0.95342 0.97275 1.20700 1.01179 0.84779 1.05227 1.22943 0.97934 1.00774 0.97860 1.22962 1.03344 0.98259 0.95274 1.22027 0.96544 0.99269 0.83952 1.22513 1.00552 0.98629 0.97179 1.20217 0.90633 0.87419 0.94915 0.92955 1.42487 1.78981 1.07660 1.06982 1.19260 1.37214 0.93841 0.86569 0.91179 1.24706 1.02236 0.97178 0.96599 1.69660 1.51700 1.13004 1.23606 0.86173 0.77306 0.79975 0.83043 1.20633 1.21966 1.21970 0.92722 0.93695 0.90978 0.90269 0.89544 0.77965 0.84983 0.87705 0.88469 0.88182 0.88670 0.91344 0.89154 0.93264 0.90579 0.78105 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.06 37.16 0.34 -1.80 16 2 C -0.11 -1.73 2.67 -90.50 -0.24 -1.97 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.12 2.01 5.41 -3.71 -0.02 1.99 16 5 N -0.59 -9.68 2.97 -174.31 -0.52 -10.20 16 6 C 0.59 9.98 7.19 -12.85 -0.09 9.89 16 7 O -0.53 -10.15 15.25 5.20 0.08 -10.07 16 8 C -0.27 -4.00 5.36 -37.10 -0.20 -4.20 16 9 S 0.19 2.23 20.38 -107.50 -2.19 0.04 16 10 C 0.01 0.12 12.22 51.75 0.63 0.76 16 11 N -0.47 -5.92 9.80 -11.53 -0.11 -6.03 16 12 C 0.16 2.16 6.42 -83.89 -0.54 1.62 16 13 C -0.10 -1.26 5.77 -91.77 -0.53 -1.79 16 14 C -0.16 -1.64 10.08 -26.73 -0.27 -1.91 16 15 C -0.16 -1.70 10.23 -26.74 -0.27 -1.98 16 16 C 0.11 1.69 5.72 -3.71 -0.02 1.67 16 17 C -0.15 -2.41 5.78 -26.61 -0.15 -2.57 16 18 C 0.18 3.24 2.53 -67.89 -0.17 3.07 16 19 H 0.05 0.98 8.08 -51.93 -0.42 0.57 16 20 N -0.72 -16.07 3.64 -53.39 -0.19 -16.27 16 21 C -0.24 -6.05 9.93 -15.06 -0.15 -6.20 16 22 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 23 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 24 N -0.93 -26.53 13.06 55.49 0.72 -25.81 16 25 Si 0.90 21.40 29.55 -169.99 -5.02 16.38 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.31 7.54 -51.93 -0.39 0.91 16 32 H 0.08 1.45 6.64 -51.93 -0.34 1.11 16 33 H 0.09 1.42 7.03 -51.93 -0.36 1.06 16 34 H 0.20 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.13 1.87 6.85 -51.93 -0.36 1.51 16 36 H 0.10 1.12 7.74 -51.93 -0.40 0.72 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 0.98 4.22 -35.63 -0.15 0.83 16 41 H 0.09 1.68 7.74 -51.93 -0.40 1.27 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 44 H 0.38 9.22 5.93 -40.82 -0.24 8.98 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 370.95 15.07 5.59 5.59 Total: -1.00 -29.91 370.95 -9.86 -39.77 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -6.42 Total: 10.41 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -1.79 Total: -3.81 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: -0.10 Total: -58.31 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.19 Total: 0.04 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.91 -9.86 -39.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036219471.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.845 kcal (2) G-P(sol) polarization free energy of solvation -29.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds