Wall clock time and date at job start Tue Mar 31 2020 19:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.49516 * 2 1 4 4 C 1.53186 * 109.52368 * 239.91929 * 2 1 3 5 5 N 1.46928 * 108.77339 * 185.39729 * 4 2 1 6 6 C 1.34775 * 120.62922 * 233.60521 * 5 4 2 7 7 O 1.21689 * 120.00253 * 355.68689 * 6 5 4 8 8 C 1.46687 * 119.99991 * 175.67367 * 6 5 4 9 9 S 1.76213 * 126.12652 * 49.25239 * 8 6 5 10 10 C 1.70957 * 90.31405 * 179.97438 * 9 8 6 11 11 N 1.29426 * 110.38765 * 0.34279 * 10 9 8 12 12 C 1.30949 * 117.36729 * 359.72993 * 11 10 9 13 13 C 1.50703 * 122.90473 * 179.97438 * 12 11 10 14 14 C 1.52999 * 117.49654 * 8.62070 * 13 12 11 15 15 C 1.52992 * 117.49830 * 299.99821 * 13 12 11 16 16 C 1.46918 * 118.74026 * 53.60781 * 5 4 2 17 17 C 1.53198 * 108.77666 * 306.39153 * 16 5 4 18 18 C 1.53038 * 109.31006 * 54.63523 * 17 16 5 19 19 H 1.09001 * 109.45753 * 178.61429 * 18 17 16 20 20 N 1.46497 * 109.46121 * 58.65556 * 18 17 16 21 21 C 1.36934 * 119.99812 * 84.93247 * 20 18 17 22 22 H 1.08002 * 120.00225 * 359.97438 * 21 20 18 23 23 C 1.38818 * 120.00216 * 180.02562 * 21 20 18 24 24 N 1.31624 * 119.99536 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00252 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47264 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.46983 * 119.99989 * 25 23 21 28 28 H 1.48496 * 109.47084 * 239.99810 * 25 23 21 29 29 H 1.09003 * 109.47416 * 299.99598 * 1 2 3 30 30 H 1.09003 * 109.47312 * 60.00384 * 1 2 3 31 31 H 1.09003 * 109.46914 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.58930 * 305.18165 * 4 2 1 33 33 H 1.08996 * 109.58966 * 65.61246 * 4 2 1 34 34 H 1.07992 * 124.80680 * 180.10556 * 10 9 8 35 35 H 1.08997 * 115.54567 * 154.32715 * 13 12 11 36 36 H 1.08997 * 117.50344 * 0.02562 * 14 13 12 37 37 H 1.09007 * 117.49653 * 145.01983 * 14 13 12 38 38 H 1.09006 * 117.50082 * 214.97847 * 15 13 12 39 39 H 1.09001 * 117.50216 * 359.97438 * 15 13 12 40 40 H 1.09004 * 109.59198 * 186.60535 * 16 5 4 41 41 H 1.08999 * 109.59137 * 66.17989 * 16 5 4 42 42 H 1.08997 * 109.49869 * 294.68229 * 17 16 5 43 43 H 1.09000 * 109.49706 * 174.58846 * 17 16 5 44 44 H 0.97005 * 120.00209 * 264.93212 * 20 18 17 45 45 H 0.97003 * 119.99651 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7237 -1.2493 5 7 3.5053 -0.8283 -1.1689 6 6 4.2819 -0.3849 -2.1773 7 8 3.7715 0.0353 -3.1989 8 6 5.7424 -0.4087 -2.0432 9 16 6.7151 -1.7802 -1.5160 10 6 8.1389 -0.8508 -1.6938 11 7 7.8497 0.3444 -2.0974 12 6 6.5858 0.6233 -2.2962 13 6 6.1093 1.9740 -2.7648 14 6 7.1710 2.9839 -3.2052 15 6 6.4295 3.1815 -1.8816 16 6 4.1059 -1.4254 0.0316 17 6 3.5708 -0.6938 1.2667 18 6 2.0408 -0.7227 1.2486 19 1 1.6577 -0.2242 2.1390 20 7 1.5790 -2.1129 1.2310 21 6 1.4488 -2.8059 2.4049 22 1 1.6870 -2.3278 3.3436 23 6 1.0118 -4.1234 2.3883 24 7 0.7220 -4.7062 1.2442 25 14 0.8349 -5.0690 3.9895 26 1 1.2210 -4.1947 5.1260 27 1 -0.5757 -5.5027 4.1549 28 1 1.7192 -6.2616 3.9603 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6064 -1.7217 -1.2978 33 1 1.7645 -0.1580 -2.1388 34 1 9.1379 -1.2090 -1.4937 35 1 5.1585 1.9782 -3.2976 36 1 8.2140 2.6712 -3.1564 37 1 6.9187 3.6527 -4.0282 38 1 5.6895 3.9805 -1.8336 39 1 6.9844 2.9990 -0.9613 40 1 5.1902 -1.3228 -0.0125 41 1 3.8387 -2.4806 0.0877 42 1 3.9154 0.3402 1.2548 43 1 3.9334 -1.1882 2.1679 44 1 1.3655 -2.5424 0.3879 45 1 0.4163 -5.6267 1.2327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036219471.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:15 Heat of formation + Delta-G solvation = 36.042482 kcal Electronic energy + Delta-G solvation = -27519.647115 eV Core-core repulsion = 23857.509171 eV Total energy + Delta-G solvation = -3662.137944 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.77737 -40.79998 -39.04210 -37.46915 -35.92776 -34.55788 -33.06036 -31.80989 -30.94815 -28.16563 -27.11065 -26.15495 -25.30556 -24.00320 -23.25565 -23.11772 -22.35298 -20.28646 -19.44043 -19.31366 -19.12789 -17.88548 -17.61208 -16.76673 -16.45182 -16.25054 -15.99897 -15.65931 -15.51258 -15.44219 -15.18051 -14.89425 -14.75008 -14.34172 -14.13351 -13.64910 -13.40577 -13.08318 -12.98717 -12.88723 -12.72829 -12.57433 -12.45762 -12.40396 -12.07882 -12.04096 -11.96226 -11.76193 -11.59608 -11.37529 -11.31569 -11.17415 -10.91042 -10.75035 -10.37344 -9.78867 -9.64717 -8.92155 -7.87656 -5.14018 -0.71510 0.05972 0.53467 1.37479 1.49808 1.51710 1.59844 1.69421 1.96772 2.60702 2.92509 3.13159 3.37109 3.46400 3.68366 3.82564 3.85363 3.91754 3.98595 4.05854 4.09493 4.22536 4.26450 4.34649 4.44690 4.50743 4.57799 4.67364 4.74576 4.81267 4.84659 4.91598 4.99661 5.02478 5.11962 5.16283 5.18171 5.23591 5.26986 5.27279 5.45431 5.57728 5.62283 6.23502 6.34024 6.53459 6.90320 7.41846 8.16922 8.40971 9.35671 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.003598 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.087981 B = 7779.240328 C = 8663.962275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.098 4.098 3 H 0.087 0.913 4 C 0.125 3.875 5 N -0.591 5.591 6 C 0.596 3.404 7 O -0.565 6.565 8 C -0.316 4.316 9 S 0.202 5.798 10 C 0.042 3.958 11 N -0.488 5.488 12 C 0.163 3.837 13 C -0.127 4.127 14 C -0.142 4.142 15 C -0.148 4.148 16 C 0.114 3.886 17 C -0.140 4.140 18 C 0.173 3.827 19 H 0.051 0.949 20 N -0.724 5.724 21 C -0.225 4.225 22 H 0.076 0.924 23 C -0.072 4.072 24 N -0.968 5.968 25 Si 0.962 3.038 26 H -0.267 1.267 27 H -0.301 1.301 28 H -0.298 1.298 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.040 0.960 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.248 0.752 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.374 0.626 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.928 12.889 -5.021 20.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.117 4.117 3 H 0.105 0.895 4 C 0.003 3.997 5 N -0.321 5.321 6 C 0.384 3.616 7 O -0.446 6.446 8 C -0.440 4.440 9 S 0.458 5.542 10 C -0.252 4.252 11 N -0.201 5.201 12 C 0.025 3.975 13 C -0.148 4.148 14 C -0.180 4.180 15 C -0.186 4.186 16 C -0.009 4.009 17 C -0.180 4.180 18 C 0.065 3.935 19 H 0.069 0.931 20 N -0.365 5.365 21 C -0.357 4.357 22 H 0.094 0.906 23 C -0.264 4.264 24 N -0.619 5.619 25 Si 0.793 3.207 26 H -0.191 1.191 27 H -0.229 1.229 28 H -0.226 1.226 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.264 0.736 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.207 0.793 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 14.945 12.341 -5.082 20.037 hybrid contribution -0.813 -0.671 0.223 1.077 sum 14.133 11.669 -4.859 18.961 Atomic orbital electron populations 1.21597 0.93702 1.01624 1.01941 1.21631 0.96811 0.99310 0.93982 0.89515 1.21601 0.78096 1.00686 0.99350 1.48022 1.07110 1.58996 1.17972 1.17001 0.84754 0.77142 0.82745 1.90754 1.74873 1.49500 1.29457 1.25211 0.98508 1.00910 1.19360 1.84346 0.98000 1.14089 1.57750 1.29481 1.05747 0.91435 0.98586 1.66020 1.17846 1.19353 1.16914 1.19728 0.86401 0.95480 0.95861 1.20698 1.01409 0.85474 1.07195 1.23008 0.97167 0.99459 0.98330 1.23024 1.03302 0.97065 0.95209 1.21909 0.97823 0.97448 0.83761 1.22390 0.98760 0.99931 0.96967 1.20428 0.91869 0.85315 0.95935 0.93053 1.42593 1.79059 1.09189 1.05677 1.19600 1.34646 0.93794 0.87664 0.90594 1.25367 1.03589 0.98417 0.99011 1.69811 1.53898 1.12815 1.25414 0.85232 0.76349 0.78640 0.80495 1.19106 1.22913 1.22591 0.91998 0.91584 0.94055 0.92657 0.89415 0.73565 0.86956 0.87766 0.86834 0.86786 0.88713 0.89217 0.92080 0.90996 0.91087 0.79291 0.94410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 9.06 71.98 0.65 -3.36 16 2 C -0.10 -3.05 2.67 -10.72 -0.03 -3.08 16 3 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 4 C 0.12 4.24 5.41 86.36 0.47 4.70 16 5 N -0.59 -19.50 2.97 -823.62 -2.45 -21.95 16 6 C 0.60 20.16 7.19 86.45 0.62 20.78 16 7 O -0.56 -21.93 15.25 -4.31 -0.07 -22.00 16 8 C -0.32 -9.02 5.36 23.88 0.13 -8.89 16 9 S 0.20 4.30 20.38 -56.49 -1.15 3.15 16 10 C 0.04 0.71 12.22 130.60 1.60 2.31 16 11 N -0.49 -11.05 9.80 -190.40 -1.87 -12.92 16 12 C 0.16 4.30 6.42 42.09 0.27 4.57 16 13 C -0.13 -3.13 5.77 -11.54 -0.07 -3.20 16 14 C -0.14 -2.67 10.08 30.59 0.31 -2.36 16 15 C -0.15 -2.83 10.23 30.59 0.31 -2.52 16 16 C 0.11 3.62 5.72 86.37 0.49 4.11 16 17 C -0.14 -4.39 5.78 30.67 0.18 -4.22 16 18 C 0.17 6.18 2.53 45.02 0.11 6.29 16 19 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 20 N -0.72 -32.83 3.64 -322.81 -1.18 -34.01 16 21 C -0.22 -11.48 9.93 84.04 0.83 -10.65 16 22 H 0.08 3.74 7.83 -2.91 -0.02 3.71 16 23 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 24 N -0.97 -56.78 13.06 21.65 0.28 -56.50 16 25 Si 0.96 44.46 29.55 68.60 2.03 46.48 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 27 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 28 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 29 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.04 1.52 7.54 -2.39 -0.02 1.50 16 32 H 0.06 2.14 6.64 -2.39 -0.02 2.12 16 33 H 0.09 2.94 7.03 -2.39 -0.02 2.93 16 34 H 0.25 1.74 8.06 -2.91 -0.02 1.72 16 35 H 0.11 3.21 6.85 -2.39 -0.02 3.19 16 36 H 0.10 1.98 7.74 -2.39 -0.02 1.96 16 37 H 0.11 1.72 8.14 -2.38 -0.02 1.71 16 38 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.09 2.47 4.22 -12.75 -0.05 2.42 16 41 H 0.06 2.32 7.74 -2.39 -0.02 2.30 16 42 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.37 18.61 5.93 -92.70 -0.55 18.06 16 45 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -65.91 370.95 2.37 -63.53 By element: Atomic # 1 Polarization: 32.71 SS G_CDS: 0.42 Total: 33.13 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 6.35 Total: 1.07 kcal Atomic # 7 Polarization: -120.17 SS G_CDS: -5.21 Total: -125.37 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.07 Total: -22.00 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 4.30 SS G_CDS: -1.15 Total: 3.15 kcal Total: -65.91 2.37 -63.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036219471.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.576 kcal (2) G-P(sol) polarization free energy of solvation -65.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds