Wall clock time and date at job start Tue Mar 31 2020 19:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.52551 * 2 1 4 4 C 1.53192 * 109.49675 * 239.91684 * 2 1 3 5 5 N 1.46929 * 108.77591 * 185.41480 * 4 2 1 6 6 C 1.34768 * 120.63158 * 233.58864 * 5 4 2 7 7 O 1.21695 * 120.00190 * 355.67042 * 6 5 4 8 8 C 1.46690 * 120.00531 * 175.67219 * 6 5 4 9 9 S 1.76218 * 126.12524 * 49.34057 * 8 6 5 10 10 C 1.70956 * 90.31190 * 179.97438 * 9 8 6 11 11 N 1.29437 * 110.39000 * 0.35154 * 10 9 8 12 12 C 1.30944 * 117.35995 * 359.72080 * 11 10 9 13 13 C 1.50702 * 122.89922 * 179.97438 * 12 11 10 14 14 C 1.53002 * 117.49725 * 8.75165 * 13 12 11 15 15 C 1.52992 * 117.50180 * 300.09316 * 13 12 11 16 16 C 1.46927 * 118.74005 * 53.60675 * 5 4 2 17 17 C 1.53189 * 108.77884 * 306.39479 * 16 5 4 18 18 C 1.53044 * 109.49880 * 120.07832 * 2 1 3 19 19 H 1.09007 * 109.45670 * 61.29594 * 18 2 1 20 20 N 1.46496 * 109.46233 * 301.33871 * 18 2 1 21 21 C 1.36935 * 120.00365 * 154.93084 * 20 18 2 22 22 H 1.08006 * 119.99818 * 359.97438 * 21 20 18 23 23 C 1.38814 * 120.00403 * 180.02562 * 21 20 18 24 24 N 1.31619 * 120.00328 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99756 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.46836 * 90.00460 * 25 23 21 27 27 H 1.48497 * 109.47324 * 210.00266 * 25 23 21 28 28 H 1.48505 * 109.47334 * 330.00644 * 25 23 21 29 29 H 1.09000 * 109.46712 * 299.92303 * 1 2 3 30 30 H 1.08992 * 109.46799 * 59.91854 * 1 2 3 31 31 H 1.08996 * 109.47033 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.58798 * 65.62974 * 4 2 1 33 33 H 1.08999 * 109.70312 * 305.26561 * 4 2 1 34 34 H 1.07993 * 124.80446 * 180.10541 * 10 9 8 35 35 H 1.09000 * 115.54607 * 154.41796 * 13 12 11 36 36 H 1.08997 * 117.50129 * 359.97438 * 14 13 12 37 37 H 1.09001 * 117.49633 * 145.01857 * 14 13 12 38 38 H 1.09009 * 117.49821 * 214.97584 * 15 13 12 39 39 H 1.09004 * 117.50258 * 359.96956 * 15 13 12 40 40 H 1.08993 * 109.59026 * 186.60563 * 16 5 4 41 41 H 1.09002 * 109.58661 * 66.17895 * 16 5 4 42 42 H 1.09000 * 109.49957 * 294.68278 * 17 16 5 43 43 H 1.08996 * 109.53120 * 174.60045 * 17 16 5 44 44 H 0.97005 * 119.99956 * 334.92571 * 20 18 2 45 45 H 0.96992 * 119.99605 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2496 5 7 3.5046 -0.8292 -1.1696 6 6 4.2811 -0.3865 -2.1782 7 8 3.7706 0.0335 -3.1999 8 6 5.7417 -0.4110 -2.0447 9 16 6.7141 -1.7836 -1.5196 10 6 8.1381 -0.8544 -1.6966 11 7 7.8492 0.3416 -2.0985 12 6 6.5853 0.6210 -2.2964 13 6 6.1091 1.9726 -2.7629 14 6 7.1708 2.9817 -3.2051 15 6 6.4318 3.1791 -1.8793 16 6 4.1053 -1.4267 0.0308 17 6 3.5709 -0.6951 1.2660 18 6 2.0408 -0.7230 1.2484 19 1 1.6967 -1.7573 1.2353 20 7 1.5266 -0.0529 2.4453 21 6 1.3952 -0.7495 3.6169 22 1 1.6703 -1.7931 3.6585 23 6 0.9074 -0.1147 4.7509 24 7 0.7806 -0.7843 5.8769 25 14 0.4309 1.6901 4.6789 26 1 -0.9999 1.8094 4.2997 27 1 0.6435 2.3118 6.0106 28 1 1.2701 2.3838 3.6691 29 1 -0.3633 0.5126 0.8907 30 1 -0.3632 0.5151 -0.8892 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7638 -0.1580 -2.1389 33 1 1.6054 -1.7216 -1.3004 34 1 9.1370 -1.2132 -1.4973 35 1 5.1574 1.9780 -3.2942 36 1 8.2137 2.6682 -3.1582 37 1 6.9173 3.6513 -4.0270 38 1 5.6925 3.9785 -1.8294 39 1 6.9882 2.9953 -0.9601 40 1 5.1895 -1.3247 -0.0137 41 1 3.8375 -2.4819 0.0869 42 1 3.9160 0.3388 1.2541 43 1 3.9334 -1.1892 2.1674 44 1 1.2792 0.8843 2.4079 45 1 0.4401 -0.3406 6.6693 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036219474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:18 Heat of formation + Delta-G solvation = 55.009764 kcal Electronic energy + Delta-G solvation = -27231.216587 eV Core-core repulsion = 23569.901126 eV Total energy + Delta-G solvation = -3661.315461 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.80362 -39.75704 -37.75154 -36.66756 -34.83990 -33.06570 -31.65646 -30.92973 -29.88991 -27.18607 -26.00878 -24.99952 -23.20652 -22.74669 -22.48988 -21.75005 -21.14791 -19.84050 -18.64975 -18.37556 -17.57163 -16.91741 -16.60853 -15.68599 -15.33055 -15.02574 -14.71139 -14.69194 -14.43858 -14.29972 -13.96086 -13.65865 -13.35537 -12.98743 -12.60261 -12.56183 -12.50180 -12.09465 -11.85784 -11.71438 -11.67135 -11.50325 -11.10225 -11.01431 -10.94205 -10.77664 -10.60797 -10.55710 -10.34345 -10.24139 -9.90557 -9.84532 -9.63224 -9.53213 -9.00925 -8.89724 -8.65329 -7.32451 -5.82423 -3.18050 0.09730 0.86887 1.28445 2.24383 2.66358 3.00961 3.33387 3.36526 3.41970 3.71628 3.89833 4.32849 4.53427 4.54249 4.67554 4.83729 4.89884 4.96895 4.97833 5.09150 5.17836 5.27552 5.37821 5.44652 5.50437 5.55464 5.60197 5.62952 5.76975 5.81499 5.89071 5.96166 5.97427 6.03946 6.04592 6.21047 6.22292 6.32567 6.42725 6.62293 6.70097 6.87762 7.23738 7.37071 7.92824 7.97029 8.36665 9.14701 9.87546 10.07308 11.35830 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013948 B = 0.003377 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.948962 B = 8290.566301 C = 8373.123033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.070 0.930 4 C 0.123 3.877 5 N -0.596 5.596 6 C 0.599 3.401 7 O -0.530 6.530 8 C -0.279 4.279 9 S 0.183 5.817 10 C 0.021 3.979 11 N -0.469 5.469 12 C 0.162 3.838 13 C -0.102 4.102 14 C -0.157 4.157 15 C -0.160 4.160 16 C 0.097 3.903 17 C -0.150 4.150 18 C 0.189 3.811 19 H 0.058 0.942 20 N -0.744 5.744 21 C -0.243 4.243 22 H 0.090 0.910 23 C 0.007 3.993 24 N -0.933 5.933 25 Si 0.881 3.119 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.278 1.278 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.205 0.795 35 H 0.132 0.868 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.083 0.917 44 H 0.361 0.639 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.911 0.158 -17.869 22.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 H 0.088 0.912 4 C 0.001 3.999 5 N -0.328 5.328 6 C 0.384 3.616 7 O -0.408 6.408 8 C -0.402 4.402 9 S 0.439 5.561 10 C -0.275 4.275 11 N -0.182 5.182 12 C 0.025 3.975 13 C -0.122 4.122 14 C -0.194 4.194 15 C -0.197 4.197 16 C -0.027 4.027 17 C -0.191 4.191 18 C 0.079 3.921 19 H 0.076 0.924 20 N -0.386 5.386 21 C -0.373 4.373 22 H 0.108 0.892 23 C -0.189 4.189 24 N -0.581 5.581 25 Si 0.711 3.289 26 H -0.210 1.210 27 H -0.218 1.218 28 H -0.204 1.204 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.222 0.778 35 H 0.150 0.850 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.194 0.806 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.905 -0.534 -17.943 22.108 hybrid contribution -0.365 1.938 0.089 1.974 sum 12.541 1.404 -17.854 21.863 Atomic orbital electron populations 1.21664 0.93911 1.02258 1.01645 1.21801 0.96708 1.00110 0.94810 0.91202 1.21752 0.77534 1.01303 0.99335 1.48048 1.07308 1.59647 1.17780 1.16727 0.83764 0.77772 0.83322 1.90802 1.73917 1.47616 1.28479 1.25338 0.99308 0.99049 1.16543 1.84140 0.98220 1.15354 1.58419 1.28710 1.04499 0.92585 1.01670 1.65941 1.18720 1.18165 1.15363 1.19539 0.85948 0.95343 0.96623 1.20722 1.01225 0.84800 1.05489 1.22960 0.97871 1.00641 0.97921 1.22995 1.03349 0.98103 0.95287 1.22176 0.97963 0.97781 0.84775 1.22641 0.99981 1.00456 0.96000 1.20170 0.90351 0.96118 0.85452 0.92362 1.42769 1.78143 1.10069 1.07634 1.19046 1.36459 0.95693 0.86124 0.89177 1.24646 1.01278 0.97356 0.95607 1.69691 1.51986 1.35696 1.00677 0.86608 0.78611 0.86803 0.76838 1.21020 1.21770 1.20389 0.91385 0.93451 0.92446 0.89038 0.90955 0.77810 0.84995 0.87664 0.88400 0.88071 0.88548 0.90475 0.90642 0.92236 0.89880 0.80599 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.03 37.16 0.34 -1.65 16 2 C -0.11 -1.71 2.46 -90.50 -0.22 -1.93 16 3 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.12 1.65 5.71 -3.71 -0.02 1.63 16 5 N -0.60 -8.15 2.97 -174.31 -0.52 -8.67 16 6 C 0.60 8.77 7.18 -12.85 -0.09 8.68 16 7 O -0.53 -8.99 15.26 5.19 0.08 -8.91 16 8 C -0.28 -3.60 5.36 -37.10 -0.20 -3.80 16 9 S 0.18 1.70 20.39 -107.50 -2.19 -0.49 16 10 C 0.02 0.18 12.22 51.75 0.63 0.81 16 11 N -0.47 -5.46 9.81 -11.53 -0.11 -5.57 16 12 C 0.16 2.09 6.41 -83.89 -0.54 1.55 16 13 C -0.10 -1.25 5.77 -91.77 -0.53 -1.78 16 14 C -0.16 -1.58 10.09 -26.70 -0.27 -1.85 16 15 C -0.16 -1.71 10.24 -26.70 -0.27 -1.98 16 16 C 0.10 1.24 5.98 -3.71 -0.02 1.22 16 17 C -0.15 -2.38 5.66 -26.61 -0.15 -2.53 16 18 C 0.19 3.32 2.19 -67.89 -0.15 3.17 16 19 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 20 N -0.74 -16.43 4.21 -53.38 -0.22 -16.66 16 21 C -0.24 -6.48 10.41 -15.06 -0.16 -6.64 16 22 H 0.09 2.57 8.06 -52.48 -0.42 2.14 16 23 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 24 N -0.93 -28.48 13.97 55.49 0.78 -27.70 16 25 Si 0.88 21.56 27.74 -169.99 -4.71 16.85 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 27 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 28 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 29 H 0.07 1.13 7.36 -51.93 -0.38 0.74 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 1.25 7.03 -51.93 -0.36 0.89 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.21 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.13 1.77 6.86 -51.93 -0.36 1.42 16 36 H 0.10 1.08 7.74 -51.93 -0.40 0.68 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.10 0.97 8.14 -51.92 -0.42 0.55 16 39 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.08 0.90 4.23 -35.77 -0.15 0.75 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.36 8.03 5.37 -40.82 -0.22 7.81 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 371.79 15.07 5.60 5.60 Total: -1.00 -32.21 371.79 -9.59 -41.81 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -6.54 Total: 8.75 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -1.75 Total: -4.99 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -0.08 Total: -58.61 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.71 Total: 16.85 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.19 Total: -0.49 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.21 -9.59 -41.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036219474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.815 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds