Wall clock time and date at job start Tue Mar 31 2020 19:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.52551 * 2 1 4 4 C 1.53192 * 109.49675 * 239.91684 * 2 1 3 5 5 N 1.46929 * 108.77591 * 185.41480 * 4 2 1 6 6 C 1.34768 * 120.63158 * 233.58864 * 5 4 2 7 7 O 1.21695 * 120.00190 * 355.67042 * 6 5 4 8 8 C 1.46690 * 120.00531 * 175.67219 * 6 5 4 9 9 S 1.76218 * 126.12524 * 49.34057 * 8 6 5 10 10 C 1.70956 * 90.31190 * 179.97438 * 9 8 6 11 11 N 1.29437 * 110.39000 * 0.35154 * 10 9 8 12 12 C 1.30944 * 117.35995 * 359.72080 * 11 10 9 13 13 C 1.50702 * 122.89922 * 179.97438 * 12 11 10 14 14 C 1.53002 * 117.49725 * 8.75165 * 13 12 11 15 15 C 1.52992 * 117.50180 * 300.09316 * 13 12 11 16 16 C 1.46927 * 118.74005 * 53.60675 * 5 4 2 17 17 C 1.53189 * 108.77884 * 306.39479 * 16 5 4 18 18 C 1.53044 * 109.49880 * 120.07832 * 2 1 3 19 19 H 1.09007 * 109.45670 * 61.29594 * 18 2 1 20 20 N 1.46496 * 109.46233 * 301.33871 * 18 2 1 21 21 C 1.36935 * 120.00365 * 154.93084 * 20 18 2 22 22 H 1.08006 * 119.99818 * 359.97438 * 21 20 18 23 23 C 1.38814 * 120.00403 * 180.02562 * 21 20 18 24 24 N 1.31619 * 120.00328 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99756 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.46836 * 90.00460 * 25 23 21 27 27 H 1.48497 * 109.47324 * 210.00266 * 25 23 21 28 28 H 1.48505 * 109.47334 * 330.00644 * 25 23 21 29 29 H 1.09000 * 109.46712 * 299.92303 * 1 2 3 30 30 H 1.08992 * 109.46799 * 59.91854 * 1 2 3 31 31 H 1.08996 * 109.47033 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.58798 * 65.62974 * 4 2 1 33 33 H 1.08999 * 109.70312 * 305.26561 * 4 2 1 34 34 H 1.07993 * 124.80446 * 180.10541 * 10 9 8 35 35 H 1.09000 * 115.54607 * 154.41796 * 13 12 11 36 36 H 1.08997 * 117.50129 * 359.97438 * 14 13 12 37 37 H 1.09001 * 117.49633 * 145.01857 * 14 13 12 38 38 H 1.09009 * 117.49821 * 214.97584 * 15 13 12 39 39 H 1.09004 * 117.50258 * 359.96956 * 15 13 12 40 40 H 1.08993 * 109.59026 * 186.60563 * 16 5 4 41 41 H 1.09002 * 109.58661 * 66.17895 * 16 5 4 42 42 H 1.09000 * 109.49957 * 294.68278 * 17 16 5 43 43 H 1.08996 * 109.53120 * 174.60045 * 17 16 5 44 44 H 0.97005 * 119.99956 * 334.92571 * 20 18 2 45 45 H 0.96992 * 119.99605 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2496 5 7 3.5046 -0.8292 -1.1696 6 6 4.2811 -0.3865 -2.1782 7 8 3.7706 0.0335 -3.1999 8 6 5.7417 -0.4110 -2.0447 9 16 6.7141 -1.7836 -1.5196 10 6 8.1381 -0.8544 -1.6966 11 7 7.8492 0.3416 -2.0985 12 6 6.5853 0.6210 -2.2964 13 6 6.1091 1.9726 -2.7629 14 6 7.1708 2.9817 -3.2051 15 6 6.4318 3.1791 -1.8793 16 6 4.1053 -1.4267 0.0308 17 6 3.5709 -0.6951 1.2660 18 6 2.0408 -0.7230 1.2484 19 1 1.6967 -1.7573 1.2353 20 7 1.5266 -0.0529 2.4453 21 6 1.3952 -0.7495 3.6169 22 1 1.6703 -1.7931 3.6585 23 6 0.9074 -0.1147 4.7509 24 7 0.7806 -0.7843 5.8769 25 14 0.4309 1.6901 4.6789 26 1 -0.9999 1.8094 4.2997 27 1 0.6435 2.3118 6.0106 28 1 1.2701 2.3838 3.6691 29 1 -0.3633 0.5126 0.8907 30 1 -0.3632 0.5151 -0.8892 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7638 -0.1580 -2.1389 33 1 1.6054 -1.7216 -1.3004 34 1 9.1370 -1.2132 -1.4973 35 1 5.1574 1.9780 -3.2942 36 1 8.2137 2.6682 -3.1582 37 1 6.9173 3.6513 -4.0270 38 1 5.6925 3.9785 -1.8294 39 1 6.9882 2.9953 -0.9601 40 1 5.1895 -1.3247 -0.0137 41 1 3.8375 -2.4819 0.0869 42 1 3.9160 0.3388 1.2541 43 1 3.9334 -1.1892 2.1674 44 1 1.2792 0.8843 2.4079 45 1 0.4401 -0.3406 6.6693 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036219474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:17 Heat of formation + Delta-G solvation = 35.101376 kcal Electronic energy + Delta-G solvation = -27232.079879 eV Core-core repulsion = 23569.901126 eV Total energy + Delta-G solvation = -3662.178753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.77865 -40.78135 -39.03720 -37.49972 -36.34318 -34.58680 -33.30062 -31.89753 -31.47636 -28.19835 -27.20637 -26.31481 -24.33479 -24.01439 -23.30072 -23.09100 -22.28395 -21.19793 -19.77872 -19.37482 -19.20343 -17.91764 -17.65622 -16.84108 -16.57522 -16.29522 -16.06475 -15.62746 -15.52507 -15.36394 -15.20494 -14.89623 -14.86268 -14.43453 -14.10642 -13.73930 -13.52879 -13.43993 -13.11552 -12.95981 -12.87494 -12.62654 -12.45782 -12.44642 -12.19410 -12.07048 -11.90586 -11.81777 -11.76094 -11.40191 -11.34763 -11.21401 -10.96590 -10.75601 -10.39440 -9.86764 -9.67403 -9.27326 -7.99926 -5.31843 -0.72112 0.06177 0.50990 1.36171 1.38149 1.39317 1.46423 1.63043 1.96556 2.49162 2.90107 3.11763 3.30725 3.34832 3.51276 3.66066 3.76189 3.87106 3.92371 3.97526 4.04812 4.18133 4.21133 4.29090 4.40138 4.47117 4.53412 4.69124 4.70376 4.72740 4.77722 4.81518 4.87369 4.97097 4.99531 5.11536 5.13382 5.21323 5.22899 5.34882 5.40387 5.55160 5.80472 6.16083 6.24264 6.54846 6.88023 7.10172 7.86797 8.05040 9.21591 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013948 B = 0.003377 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.948962 B = 8290.566301 C = 8373.123033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.103 4.103 3 H 0.062 0.938 4 C 0.127 3.873 5 N -0.597 5.597 6 C 0.600 3.400 7 O -0.560 6.560 8 C -0.319 4.319 9 S 0.225 5.775 10 C 0.037 3.963 11 N -0.493 5.493 12 C 0.158 3.842 13 C -0.124 4.124 14 C -0.140 4.140 15 C -0.156 4.156 16 C 0.105 3.895 17 C -0.141 4.141 18 C 0.183 3.817 19 H 0.054 0.946 20 N -0.747 5.747 21 C -0.219 4.219 22 H 0.063 0.937 23 C -0.060 4.060 24 N -0.983 5.983 25 Si 0.944 3.056 26 H -0.279 1.279 27 H -0.300 1.300 28 H -0.258 1.258 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.246 0.754 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.049 0.951 43 H 0.068 0.932 44 H 0.362 0.638 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.409 0.370 -19.563 24.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.123 4.123 3 H 0.080 0.920 4 C 0.005 3.995 5 N -0.328 5.328 6 C 0.387 3.613 7 O -0.441 6.441 8 C -0.443 4.443 9 S 0.481 5.519 10 C -0.258 4.258 11 N -0.206 5.206 12 C 0.021 3.979 13 C -0.145 4.145 14 C -0.177 4.177 15 C -0.194 4.194 16 C -0.018 4.018 17 C -0.182 4.182 18 C 0.075 3.925 19 H 0.072 0.928 20 N -0.389 5.389 21 C -0.350 4.350 22 H 0.081 0.919 23 C -0.251 4.251 24 N -0.634 5.634 25 Si 0.773 3.227 26 H -0.206 1.206 27 H -0.227 1.227 28 H -0.183 1.183 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.262 0.738 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.195 0.805 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.424 -0.335 -19.691 24.411 hybrid contribution -0.727 1.759 0.554 1.983 sum 13.697 1.425 -19.136 23.576 Atomic orbital electron populations 1.21635 0.93332 1.02561 1.01694 1.21668 0.97136 0.99438 0.94099 0.91981 1.21719 0.77632 1.01987 0.98168 1.48081 1.07373 1.59549 1.17766 1.16946 0.84597 0.76910 0.82875 1.90774 1.74795 1.48867 1.29639 1.25284 0.98745 1.01159 1.19125 1.83928 0.97276 1.13258 1.57439 1.29473 1.06058 0.91494 0.98762 1.65997 1.18044 1.19549 1.17047 1.19687 0.86571 0.95501 0.96177 1.20712 1.01374 0.85631 1.06775 1.23008 0.97227 0.99527 0.97967 1.23015 1.03543 0.97541 0.95323 1.22151 0.98719 0.98093 0.82876 1.22436 0.98426 1.00206 0.97098 1.20405 0.91384 0.95823 0.84900 0.92777 1.42786 1.78457 1.10031 1.07626 1.19015 1.33778 0.94703 0.87462 0.91857 1.25348 1.02682 1.01669 0.95425 1.69857 1.54460 1.37585 1.01525 0.85567 0.78628 0.81831 0.76679 1.20556 1.22700 1.18296 0.93590 0.91103 0.92048 0.89021 0.89282 0.73762 0.86770 0.87712 0.86778 0.87200 0.89092 0.89040 0.88798 0.93211 0.91317 0.80485 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 9.03 71.98 0.65 -3.04 16 2 C -0.10 -2.96 2.46 -10.71 -0.03 -2.99 16 3 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 4 C 0.13 3.20 5.71 86.36 0.49 3.69 16 5 N -0.60 -15.45 2.97 -823.62 -2.45 -17.90 16 6 C 0.60 17.04 7.18 86.45 0.62 17.66 16 7 O -0.56 -18.89 15.26 -4.33 -0.07 -18.96 16 8 C -0.32 -7.84 5.36 23.88 0.13 -7.71 16 9 S 0.22 3.57 20.39 -56.49 -1.15 2.42 16 10 C 0.04 0.52 12.22 130.60 1.60 2.12 16 11 N -0.49 -10.46 9.81 -190.40 -1.87 -12.33 16 12 C 0.16 3.90 6.41 42.09 0.27 4.17 16 13 C -0.12 -3.00 5.77 -11.54 -0.07 -3.07 16 14 C -0.14 -2.64 10.09 30.62 0.31 -2.34 16 15 C -0.16 -3.22 10.24 30.61 0.31 -2.90 16 16 C 0.11 2.50 5.98 86.36 0.52 3.02 16 17 C -0.14 -4.35 5.66 30.67 0.17 -4.18 16 18 C 0.18 6.28 2.19 45.02 0.10 6.38 16 19 H 0.05 1.92 8.08 -2.38 -0.02 1.90 16 20 N -0.75 -32.67 4.21 -322.79 -1.36 -34.03 16 21 C -0.22 -11.77 10.41 84.03 0.87 -10.89 16 22 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 23 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 24 N -0.98 -61.57 13.97 21.65 0.30 -61.27 16 25 Si 0.94 44.85 27.74 68.60 1.90 46.75 16 26 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 27 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 28 H -0.26 -11.24 6.52 99.48 0.65 -10.59 16 29 H 0.04 1.46 7.36 -2.39 -0.02 1.45 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 2.38 7.03 -2.39 -0.02 2.36 16 33 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.25 1.21 8.06 -2.91 -0.02 1.19 16 35 H 0.11 3.13 6.86 -2.39 -0.02 3.12 16 36 H 0.10 2.00 7.74 -2.39 -0.02 1.98 16 37 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 40 H 0.09 1.95 4.23 -12.67 -0.05 1.89 16 41 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.36 15.72 5.37 -92.70 -0.50 15.22 16 45 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -71.31 371.79 2.14 -69.17 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.41 Total: 29.16 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 6.42 Total: -3.02 kcal Atomic # 7 Polarization: -120.15 SS G_CDS: -5.37 Total: -125.52 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.07 Total: -18.96 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.90 Total: 46.75 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -1.15 Total: 2.42 kcal Total: -71.31 2.14 -69.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036219474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.273 kcal (2) G-P(sol) polarization free energy of solvation -71.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds