Wall clock time and date at job start Tue Mar 31 2020 19:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.52618 * 2 1 4 4 C 1.53196 * 109.49925 * 120.08237 * 2 1 3 5 5 N 1.46927 * 108.77503 * 174.58635 * 4 2 1 6 6 C 1.34772 * 120.63136 * 126.37506 * 5 4 2 7 7 O 1.21683 * 119.99898 * 176.41166 * 6 5 4 8 8 C 1.46686 * 119.99757 * 356.40360 * 6 5 4 9 9 C 1.35661 * 126.13004 * 223.84338 * 8 6 5 10 10 N 1.30942 * 114.19008 * 179.82990 * 9 8 6 11 11 C 1.29428 * 117.36229 * 0.48113 * 10 9 8 12 12 C 1.50705 * 124.80123 * 179.69391 * 11 10 9 13 13 C 1.52992 * 117.50167 * 8.67061 * 12 11 10 14 14 C 1.52989 * 117.50379 * 300.04440 * 12 11 10 15 15 S 1.70945 * 110.39436 * 359.73505 * 11 10 9 16 16 C 1.46928 * 118.73587 * 306.38847 * 5 4 2 17 17 C 1.53191 * 108.77326 * 53.61442 * 16 5 4 18 18 C 1.53032 * 109.31551 * 305.35817 * 17 16 5 19 19 H 1.08997 * 109.46586 * 181.38929 * 18 17 16 20 20 N 1.46508 * 109.46077 * 301.35063 * 18 17 16 21 21 C 1.36937 * 119.99494 * 274.99391 * 20 18 17 22 22 H 1.07995 * 120.00108 * 0.02562 * 21 20 18 23 23 C 1.38812 * 119.99457 * 179.97438 * 21 20 18 24 24 N 1.31621 * 119.99653 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00171 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47201 * 89.99859 * 25 23 21 27 27 H 1.48504 * 109.46785 * 210.00001 * 25 23 21 28 28 H 1.48497 * 109.47039 * 329.99601 * 25 23 21 29 29 H 1.08993 * 109.47127 * 180.08260 * 1 2 3 30 30 H 1.09005 * 109.46939 * 300.07956 * 1 2 3 31 31 H 1.08997 * 109.47015 * 60.07641 * 1 2 3 32 32 H 1.09003 * 109.58548 * 54.79555 * 4 2 1 33 33 H 1.09001 * 109.70449 * 294.44586 * 4 2 1 34 34 H 1.07997 * 122.90565 * 0.02562 * 9 8 6 35 35 H 1.08999 * 115.54480 * 154.36856 * 12 11 10 36 36 H 1.09007 * 117.50053 * 359.97438 * 13 12 11 37 37 H 1.08998 * 117.50397 * 145.01533 * 13 12 11 38 38 H 1.08998 * 117.50145 * 214.98062 * 14 12 11 39 39 H 1.09002 * 117.49983 * 359.97438 * 14 12 11 40 40 H 1.09001 * 109.59007 * 293.82335 * 16 5 4 41 41 H 1.09004 * 109.58538 * 173.39608 * 16 5 4 42 42 H 1.09004 * 109.49316 * 185.40904 * 17 16 5 43 43 H 1.09001 * 109.52421 * 65.33405 * 17 16 5 44 44 H 0.96993 * 119.99912 * 94.99779 * 20 18 17 45 45 H 0.97003 * 119.99801 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8291 1.1695 6 6 4.2812 -0.3857 2.1778 7 8 5.4875 -0.5376 2.1288 8 6 3.6722 0.2800 3.3344 9 6 4.1255 1.4066 3.9391 10 7 3.3974 1.8013 4.9534 11 6 2.3639 1.0844 5.2583 12 6 1.4174 1.3791 6.3934 13 6 1.5773 2.7174 7.1174 14 6 2.0005 1.4190 7.8073 15 16 2.2249 -0.2445 4.1920 16 6 4.1052 -1.4267 -0.0309 17 6 3.5708 -0.6950 -1.2660 18 6 2.0408 -0.7230 -1.2484 19 1 1.6581 -0.2244 -2.1389 20 7 1.5783 -2.1131 -1.2309 21 6 1.4467 -2.8056 -2.4048 22 1 1.6843 -2.3274 -3.3435 23 6 1.0090 -4.1228 -2.3882 24 7 0.8830 -4.7887 -3.5165 25 14 0.5987 -4.9503 -0.7644 26 1 -0.8348 -4.7307 -0.4452 27 1 0.8647 -6.4075 -0.8704 28 1 1.4403 -4.3706 0.3130 29 1 -0.3633 -1.0276 0.0015 30 1 -0.3633 0.5151 0.8893 31 1 -0.3633 0.5126 -0.8907 32 1 1.6052 -1.7217 1.2980 33 1 1.7637 -0.1602 2.1403 34 1 5.0087 1.9342 3.6104 35 1 0.4069 0.9874 6.2766 36 1 2.3675 3.3846 6.7730 37 1 0.6721 3.2065 7.4770 38 1 1.3736 1.0539 8.6208 39 1 3.0687 1.2317 7.9166 40 1 3.8375 -2.4819 -0.0869 41 1 5.1896 -1.3246 0.0136 42 1 3.9334 -1.1897 -2.1671 43 1 3.9159 0.3389 -1.2547 44 1 1.3652 -2.5427 -0.3878 45 1 0.5767 -5.7091 -3.5049 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036260375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:21 Heat of formation + Delta-G solvation = 56.676681 kcal Electronic energy + Delta-G solvation = -27132.789260 eV Core-core repulsion = 23471.546083 eV Total energy + Delta-G solvation = -3661.243178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.57208 -39.80578 -37.96438 -37.14645 -34.46602 -32.80030 -32.06657 -30.67858 -29.70207 -26.95460 -26.52168 -25.14232 -23.51439 -22.87139 -22.76182 -21.90871 -20.93205 -19.19778 -18.75951 -18.16473 -17.88472 -16.87321 -16.49393 -16.00851 -15.23697 -14.99589 -14.81673 -14.65448 -14.43647 -14.36896 -13.94028 -13.59238 -13.47471 -13.09325 -12.67800 -12.60691 -12.36878 -12.12833 -11.92911 -11.78314 -11.68955 -11.49581 -11.26997 -11.06158 -11.03444 -11.01311 -10.72979 -10.51107 -10.31876 -10.21440 -10.01488 -9.86235 -9.63824 -9.37478 -9.00862 -8.99425 -8.49029 -7.33832 -5.83009 -3.18806 0.08116 0.84851 1.31714 2.28643 2.82427 3.09260 3.29180 3.30971 3.39459 3.41944 3.71281 4.34136 4.39664 4.43403 4.51773 4.55154 4.79893 4.94751 4.97282 5.09647 5.19629 5.23604 5.27812 5.37804 5.46063 5.50655 5.57825 5.58679 5.64907 5.71302 5.76336 5.84165 5.87227 5.96321 6.13820 6.21220 6.28783 6.37627 6.53237 6.60432 6.65777 6.80966 7.32721 7.42689 7.92717 8.05436 8.35818 9.13287 9.85755 10.05039 11.35397 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016737 B = 0.003421 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.513691 B = 8181.581162 C = 8745.616864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 H 0.073 0.927 4 C 0.101 3.899 5 N -0.593 5.593 6 C 0.592 3.408 7 O -0.531 6.531 8 C -0.286 4.286 9 C 0.110 3.890 10 N -0.477 5.477 11 C 0.071 3.929 12 C -0.102 4.102 13 C -0.147 4.147 14 C -0.154 4.154 15 S 0.195 5.805 16 C 0.120 3.880 17 C -0.149 4.149 18 C 0.185 3.815 19 H 0.063 0.937 20 N -0.743 5.743 21 C -0.241 4.241 22 H 0.091 0.909 23 C 0.007 3.993 24 N -0.932 5.932 25 Si 0.878 3.122 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.279 1.279 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.184 0.816 35 H 0.130 0.870 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.053 0.947 44 H 0.359 0.641 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.279 14.298 20.002 24.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.130 4.130 3 H 0.092 0.908 4 C -0.023 4.023 5 N -0.325 5.325 6 C 0.377 3.623 7 O -0.409 6.409 8 C -0.410 4.410 9 C -0.047 4.047 10 N -0.191 5.191 11 C -0.203 4.203 12 C -0.124 4.124 13 C -0.186 4.186 14 C -0.193 4.193 15 S 0.454 5.546 16 C -0.001 4.001 17 C -0.190 4.190 18 C 0.075 3.925 19 H 0.081 0.919 20 N -0.387 5.387 21 C -0.371 4.371 22 H 0.109 0.891 23 C -0.189 4.189 24 N -0.580 5.580 25 Si 0.708 3.292 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.206 1.206 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.201 0.799 35 H 0.148 0.852 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.072 0.928 44 H 0.193 0.807 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.273 13.710 19.908 24.173 hybrid contribution 0.402 -0.395 0.705 0.902 sum 0.129 13.315 20.612 24.539 Atomic orbital electron populations 1.21694 0.93913 1.02968 1.01120 1.21751 0.96688 0.99324 0.95246 0.90824 1.22174 0.79346 1.01687 0.99109 1.48048 1.06942 1.59249 1.18264 1.16787 0.86108 0.78302 0.81065 1.90825 1.13544 1.57267 1.79264 1.25764 1.03379 1.05176 1.06661 1.21985 0.99303 0.93207 0.90196 1.66091 1.05405 1.31197 1.16427 1.26538 0.97196 0.95871 1.00675 1.20567 0.97272 1.05210 0.89359 1.23022 1.03997 0.90209 1.01397 1.23064 1.02182 1.01470 0.92627 1.84187 1.21945 1.27326 1.21164 1.21681 0.98234 0.97941 0.82284 1.22516 0.99635 0.99196 0.97675 1.20197 0.91112 0.86167 0.95035 0.91905 1.42832 1.80700 1.09361 1.05815 1.19046 1.37584 0.94229 0.86227 0.89096 1.24642 1.01555 0.96675 0.96013 1.69689 1.52989 1.10881 1.24422 0.86670 0.78363 0.79447 0.84695 1.20989 1.21689 1.20572 0.91516 0.93544 0.91993 0.90636 0.90353 0.79902 0.85248 0.87272 0.87914 0.87686 0.88224 0.90134 0.89693 0.89954 0.92848 0.80716 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.05 37.16 0.34 -1.53 16 2 C -0.11 -1.57 2.67 -90.50 -0.24 -1.81 16 3 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.10 1.43 4.91 -3.71 -0.02 1.42 16 5 N -0.59 -9.32 2.97 -174.30 -0.52 -9.84 16 6 C 0.59 9.49 7.57 -12.85 -0.10 9.40 16 7 O -0.53 -9.99 16.51 5.20 0.09 -9.90 16 8 C -0.29 -3.83 5.53 -37.09 -0.21 -4.04 16 9 C 0.11 1.37 11.30 -18.85 -0.21 1.15 16 10 N -0.48 -5.67 9.98 -11.50 -0.11 -5.78 16 11 C 0.07 0.74 6.96 -13.29 -0.09 0.65 16 12 C -0.10 -0.77 6.28 -91.78 -0.58 -1.35 16 13 C -0.15 -0.97 10.12 -26.74 -0.27 -1.24 16 14 C -0.15 -0.98 10.23 -26.74 -0.27 -1.26 16 15 S 0.19 2.12 19.98 -107.50 -2.15 -0.03 16 16 C 0.12 2.02 6.17 -3.71 -0.02 2.00 16 17 C -0.15 -2.46 5.78 -26.62 -0.15 -2.62 16 18 C 0.18 3.21 2.53 -67.89 -0.17 3.04 16 19 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 20 N -0.74 -15.81 3.44 -53.38 -0.18 -16.00 16 21 C -0.24 -6.31 10.41 -15.06 -0.16 -6.46 16 22 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 23 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 24 N -0.93 -28.32 13.97 55.49 0.78 -27.55 16 25 Si 0.88 21.17 27.74 -169.99 -4.71 16.45 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 29 H 0.07 1.02 7.54 -51.93 -0.39 0.63 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.16 6.64 -51.93 -0.34 0.82 16 33 H 0.08 0.97 3.95 -29.84 -0.12 0.85 16 34 H 0.18 2.04 8.06 -52.49 -0.42 1.62 16 35 H 0.13 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.11 0.86 7.84 -51.93 -0.41 0.46 16 37 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 1.52 7.74 -51.93 -0.40 1.11 16 41 H 0.08 1.43 7.02 -51.93 -0.36 1.07 16 42 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.36 7.61 3.79 -40.82 -0.15 7.45 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 370.63 15.07 5.59 5.59 Total: -1.00 -31.53 370.63 -9.91 -41.44 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -6.42 Total: 8.18 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -2.25 Total: -2.56 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: -0.04 Total: -59.16 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.71 Total: 16.45 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.15 Total: -0.03 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.53 -9.91 -41.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036260375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.114 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds