Wall clock time and date at job start Tue Mar 31 2020 19:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.52618 * 2 1 4 4 C 1.53196 * 109.49925 * 120.08237 * 2 1 3 5 5 N 1.46927 * 108.77503 * 174.58635 * 4 2 1 6 6 C 1.34772 * 120.63136 * 126.37506 * 5 4 2 7 7 O 1.21683 * 119.99898 * 176.41166 * 6 5 4 8 8 C 1.46686 * 119.99757 * 356.40360 * 6 5 4 9 9 C 1.35661 * 126.13004 * 223.84338 * 8 6 5 10 10 N 1.30942 * 114.19008 * 179.82990 * 9 8 6 11 11 C 1.29428 * 117.36229 * 0.48113 * 10 9 8 12 12 C 1.50705 * 124.80123 * 179.69391 * 11 10 9 13 13 C 1.52992 * 117.50167 * 8.67061 * 12 11 10 14 14 C 1.52989 * 117.50379 * 300.04440 * 12 11 10 15 15 S 1.70945 * 110.39436 * 359.73505 * 11 10 9 16 16 C 1.46928 * 118.73587 * 306.38847 * 5 4 2 17 17 C 1.53191 * 108.77326 * 53.61442 * 16 5 4 18 18 C 1.53032 * 109.31551 * 305.35817 * 17 16 5 19 19 H 1.08997 * 109.46586 * 181.38929 * 18 17 16 20 20 N 1.46508 * 109.46077 * 301.35063 * 18 17 16 21 21 C 1.36937 * 119.99494 * 274.99391 * 20 18 17 22 22 H 1.07995 * 120.00108 * 0.02562 * 21 20 18 23 23 C 1.38812 * 119.99457 * 179.97438 * 21 20 18 24 24 N 1.31621 * 119.99653 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00171 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47201 * 89.99859 * 25 23 21 27 27 H 1.48504 * 109.46785 * 210.00001 * 25 23 21 28 28 H 1.48497 * 109.47039 * 329.99601 * 25 23 21 29 29 H 1.08993 * 109.47127 * 180.08260 * 1 2 3 30 30 H 1.09005 * 109.46939 * 300.07956 * 1 2 3 31 31 H 1.08997 * 109.47015 * 60.07641 * 1 2 3 32 32 H 1.09003 * 109.58548 * 54.79555 * 4 2 1 33 33 H 1.09001 * 109.70449 * 294.44586 * 4 2 1 34 34 H 1.07997 * 122.90565 * 0.02562 * 9 8 6 35 35 H 1.08999 * 115.54480 * 154.36856 * 12 11 10 36 36 H 1.09007 * 117.50053 * 359.97438 * 13 12 11 37 37 H 1.08998 * 117.50397 * 145.01533 * 13 12 11 38 38 H 1.08998 * 117.50145 * 214.98062 * 14 12 11 39 39 H 1.09002 * 117.49983 * 359.97438 * 14 12 11 40 40 H 1.09001 * 109.59007 * 293.82335 * 16 5 4 41 41 H 1.09004 * 109.58538 * 173.39608 * 16 5 4 42 42 H 1.09004 * 109.49316 * 185.40904 * 17 16 5 43 43 H 1.09001 * 109.52421 * 65.33405 * 17 16 5 44 44 H 0.96993 * 119.99912 * 94.99779 * 20 18 17 45 45 H 0.97003 * 119.99801 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8291 1.1695 6 6 4.2812 -0.3857 2.1778 7 8 5.4875 -0.5376 2.1288 8 6 3.6722 0.2800 3.3344 9 6 4.1255 1.4066 3.9391 10 7 3.3974 1.8013 4.9534 11 6 2.3639 1.0844 5.2583 12 6 1.4174 1.3791 6.3934 13 6 1.5773 2.7174 7.1174 14 6 2.0005 1.4190 7.8073 15 16 2.2249 -0.2445 4.1920 16 6 4.1052 -1.4267 -0.0309 17 6 3.5708 -0.6950 -1.2660 18 6 2.0408 -0.7230 -1.2484 19 1 1.6581 -0.2244 -2.1389 20 7 1.5783 -2.1131 -1.2309 21 6 1.4467 -2.8056 -2.4048 22 1 1.6843 -2.3274 -3.3435 23 6 1.0090 -4.1228 -2.3882 24 7 0.8830 -4.7887 -3.5165 25 14 0.5987 -4.9503 -0.7644 26 1 -0.8348 -4.7307 -0.4452 27 1 0.8647 -6.4075 -0.8704 28 1 1.4403 -4.3706 0.3130 29 1 -0.3633 -1.0276 0.0015 30 1 -0.3633 0.5151 0.8893 31 1 -0.3633 0.5126 -0.8907 32 1 1.6052 -1.7217 1.2980 33 1 1.7637 -0.1602 2.1403 34 1 5.0087 1.9342 3.6104 35 1 0.4069 0.9874 6.2766 36 1 2.3675 3.3846 6.7730 37 1 0.6721 3.2065 7.4770 38 1 1.3736 1.0539 8.6208 39 1 3.0687 1.2317 7.9166 40 1 3.8375 -2.4819 -0.0869 41 1 5.1896 -1.3246 0.0136 42 1 3.9334 -1.1897 -2.1671 43 1 3.9159 0.3389 -1.2547 44 1 1.3652 -2.5427 -0.3878 45 1 0.5767 -5.7091 -3.5049 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036260375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:20 Heat of formation + Delta-G solvation = 37.734804 kcal Electronic energy + Delta-G solvation = -27133.610642 eV Core-core repulsion = 23471.546083 eV Total energy + Delta-G solvation = -3662.064559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.70694 -40.81463 -39.26629 -37.77997 -36.05221 -34.35360 -33.53063 -32.12217 -31.06431 -27.91575 -27.68629 -26.48471 -25.13151 -23.96894 -23.24994 -23.01549 -22.06438 -20.44951 -19.92582 -19.57482 -19.30162 -17.97932 -17.50437 -16.95157 -16.66393 -16.34237 -16.07049 -15.66452 -15.52922 -15.48062 -15.31035 -14.97759 -14.68637 -14.52096 -14.33842 -13.69302 -13.46497 -13.21673 -13.15977 -12.95430 -12.73910 -12.72396 -12.57466 -12.36519 -12.11149 -12.01433 -11.96084 -11.87653 -11.70644 -11.65457 -11.44063 -11.19121 -10.94244 -10.74827 -10.35709 -9.90490 -9.75289 -9.26609 -7.98713 -5.30560 -0.82389 -0.04648 0.42824 1.31253 1.35232 1.38935 1.45725 1.66813 1.93063 2.49208 2.82458 3.01122 3.31643 3.34570 3.56866 3.62936 3.72022 3.88453 3.89320 4.01647 4.05368 4.14759 4.20055 4.27503 4.30758 4.34263 4.43229 4.60457 4.72609 4.80999 4.88259 4.89664 4.96727 5.00324 5.04204 5.10101 5.15182 5.16912 5.23720 5.30297 5.40901 5.52364 5.83195 6.14527 6.25130 6.50412 6.81941 7.11519 7.87144 8.05872 9.23197 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016737 B = 0.003421 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.513691 B = 8181.581162 C = 8745.616864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.101 4.101 3 H 0.094 0.906 4 C 0.101 3.899 5 N -0.594 5.594 6 C 0.595 3.405 7 O -0.567 6.567 8 C -0.319 4.319 9 C 0.118 3.882 10 N -0.495 5.495 11 C 0.084 3.916 12 C -0.118 4.118 13 C -0.143 4.143 14 C -0.147 4.147 15 S 0.221 5.779 16 C 0.125 3.875 17 C -0.141 4.141 18 C 0.178 3.822 19 H 0.055 0.945 20 N -0.741 5.741 21 C -0.214 4.214 22 H 0.060 0.940 23 C -0.062 4.062 24 N -0.985 5.985 25 Si 0.942 3.058 26 H -0.273 1.273 27 H -0.303 1.303 28 H -0.257 1.257 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.189 0.811 35 H 0.154 0.846 36 H 0.092 0.908 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.363 0.637 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.762 16.116 23.537 28.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.121 4.121 3 H 0.112 0.888 4 C -0.022 4.022 5 N -0.325 5.325 6 C 0.382 3.618 7 O -0.448 6.448 8 C -0.443 4.443 9 C -0.039 4.039 10 N -0.209 5.209 11 C -0.190 4.190 12 C -0.139 4.139 13 C -0.182 4.182 14 C -0.186 4.186 15 S 0.481 5.519 16 C 0.003 3.997 17 C -0.181 4.181 18 C 0.070 3.930 19 H 0.073 0.927 20 N -0.385 5.385 21 C -0.346 4.346 22 H 0.078 0.922 23 C -0.253 4.253 24 N -0.637 5.637 25 Si 0.770 3.230 26 H -0.199 1.199 27 H -0.230 1.230 28 H -0.182 1.182 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.205 0.795 35 H 0.172 0.828 36 H 0.111 0.889 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.197 0.803 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.766 15.583 23.480 28.235 hybrid contribution 0.899 -0.810 -0.347 1.258 sum -0.867 14.773 23.133 27.461 Atomic orbital electron populations 1.21678 0.92857 1.02158 1.02748 1.21689 0.97475 0.99713 0.93209 0.88792 1.22275 0.78239 1.01601 1.00100 1.48049 1.07605 1.59082 1.17747 1.17064 0.85650 0.77632 0.81436 1.90797 1.15166 1.58697 1.80115 1.25493 1.05599 1.06201 1.06968 1.22155 0.99214 0.92770 0.89792 1.66187 1.06238 1.31849 1.16624 1.27140 0.96617 0.94728 1.00502 1.20905 0.97760 1.06417 0.88857 1.23085 1.04495 0.89793 1.00815 1.23147 1.01833 1.01188 0.92429 1.84005 1.20176 1.26970 1.20786 1.21462 0.98222 0.96821 0.83156 1.22383 0.98798 1.00209 0.96739 1.20414 0.91521 0.84284 0.96800 0.92683 1.42766 1.80703 1.10730 1.04263 1.18984 1.34717 0.94048 0.86802 0.92235 1.25365 1.02962 0.97672 0.99348 1.69871 1.55659 1.11090 1.27042 0.85616 0.78835 0.77450 0.81111 1.19918 1.23021 1.18176 0.93484 0.90341 0.92039 0.91534 0.87993 0.79451 0.82825 0.88922 0.85571 0.85226 0.89625 0.92344 0.89999 0.91882 0.90685 0.80278 0.93615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.05 71.98 0.65 -2.61 16 2 C -0.10 -2.63 2.67 -10.71 -0.03 -2.66 16 3 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 4 C 0.10 2.63 4.91 86.36 0.42 3.06 16 5 N -0.59 -17.90 2.97 -823.59 -2.45 -20.34 16 6 C 0.59 18.50 7.57 86.45 0.65 19.15 16 7 O -0.57 -21.30 16.51 -4.30 -0.07 -21.38 16 8 C -0.32 -8.00 5.53 23.88 0.13 -7.87 16 9 C 0.12 2.76 11.30 84.23 0.95 3.71 16 10 N -0.49 -10.70 9.98 -190.31 -1.90 -12.60 16 11 C 0.08 1.49 6.96 88.46 0.62 2.11 16 12 C -0.12 -1.34 6.28 -11.54 -0.07 -1.41 16 13 C -0.14 -1.40 10.12 30.59 0.31 -1.09 16 14 C -0.15 -1.37 10.23 30.59 0.31 -1.06 16 15 S 0.22 4.16 19.98 -56.49 -1.13 3.03 16 16 C 0.13 4.21 6.17 86.36 0.53 4.75 16 17 C -0.14 -4.59 5.78 30.67 0.18 -4.41 16 18 C 0.18 6.04 2.53 45.02 0.11 6.16 16 19 H 0.06 1.97 8.08 -2.39 -0.02 1.96 16 20 N -0.74 -31.23 3.44 -322.81 -1.11 -32.34 16 21 C -0.21 -11.44 10.41 84.03 0.87 -10.56 16 22 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 23 C -0.06 -3.54 5.50 84.86 0.47 -3.08 16 24 N -0.99 -61.92 13.97 21.65 0.30 -61.62 16 25 Si 0.94 43.98 27.74 68.60 1.90 45.88 16 26 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 27 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 28 H -0.26 -10.85 6.52 99.48 0.65 -10.21 16 29 H 0.05 1.32 7.54 -2.39 -0.02 1.30 16 30 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.88 6.64 -2.39 -0.02 1.87 16 33 H 0.10 2.19 3.95 -16.43 -0.06 2.13 16 34 H 0.19 4.01 8.06 -2.91 -0.02 3.99 16 35 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.09 1.25 7.84 -2.38 -0.02 1.24 16 37 H 0.13 0.65 8.14 -2.39 -0.02 0.64 16 38 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.06 2.21 7.74 -2.39 -0.02 2.20 16 41 H 0.08 2.80 7.02 -2.38 -0.02 2.78 16 42 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 43 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.36 14.90 3.79 -92.71 -0.35 14.55 16 45 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -70.42 370.63 2.21 -68.21 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.55 Total: 26.98 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 6.12 Total: 4.17 kcal Atomic # 7 Polarization: -121.75 SS G_CDS: -5.16 Total: -126.91 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.07 Total: -21.38 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.90 Total: 45.88 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.13 Total: 3.03 kcal Total: -70.42 2.21 -68.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036260375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.949 kcal (2) G-P(sol) polarization free energy of solvation -70.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds