Wall clock time and date at job start Tue Mar 31 2020 19:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.49436 * 2 1 4 4 C 1.53191 * 109.49590 * 120.06049 * 2 1 3 5 5 N 1.46918 * 108.77636 * 174.61783 * 4 2 1 6 6 C 1.34776 * 120.63192 * 126.36643 * 5 4 2 7 7 O 1.21690 * 119.99947 * 3.59375 * 6 5 4 8 8 C 1.46680 * 120.00674 * 183.58469 * 6 5 4 9 9 C 1.35664 * 126.13374 * 135.91202 * 8 6 5 10 10 N 1.30944 * 114.19222 * 180.26359 * 9 8 6 11 11 C 1.29424 * 117.36339 * 0.02562 * 10 9 8 12 12 C 1.50701 * 124.80151 * 180.02562 * 11 10 9 13 13 C 1.52999 * 117.50126 * 8.57681 * 12 11 10 14 14 C 1.53003 * 60.00117 * 252.51350 * 13 12 11 15 15 S 1.70953 * 110.39288 * 359.97438 * 11 10 9 16 16 C 1.46925 * 118.74318 * 306.65290 * 5 4 2 17 17 C 1.52757 * 109.00947 * 53.29822 * 16 5 4 18 18 C 1.53033 * 109.38877 * 305.59564 * 17 16 5 19 19 H 1.09003 * 109.46148 * 301.22049 * 18 17 16 20 20 N 1.46502 * 109.46298 * 181.25921 * 18 17 16 21 21 C 1.36937 * 119.99928 * 84.93094 * 20 18 17 22 22 H 1.07995 * 120.00384 * 0.02562 * 21 20 18 23 23 C 1.38809 * 119.99623 * 179.97438 * 21 20 18 24 24 N 1.31620 * 120.00169 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 120.00329 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.46756 * 89.99746 * 25 23 21 27 27 H 1.48493 * 109.47165 * 209.99712 * 25 23 21 28 28 H 1.48500 * 109.47136 * 330.00035 * 25 23 21 29 29 H 1.08995 * 109.47558 * 299.93788 * 1 2 3 30 30 H 1.09003 * 109.46863 * 59.93459 * 1 2 3 31 31 H 1.09005 * 109.47001 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.58244 * 54.83505 * 4 2 1 33 33 H 1.08999 * 109.58636 * 294.41446 * 4 2 1 34 34 H 1.08001 * 122.89845 * 0.23918 * 9 8 6 35 35 H 1.09002 * 115.54974 * 154.28626 * 12 11 10 36 36 H 1.09005 * 117.49844 * 0.02562 * 13 12 11 37 37 H 1.08999 * 117.50035 * 145.01763 * 13 12 11 38 38 H 1.09005 * 117.49498 * 252.51337 * 14 13 12 39 39 H 1.09000 * 117.50059 * 107.48883 * 14 13 12 40 40 H 1.08994 * 109.59040 * 173.14015 * 16 5 4 41 41 H 1.09006 * 109.58357 * 293.56341 * 16 5 4 42 42 H 1.09007 * 109.56461 * 185.55474 * 17 16 5 43 43 H 1.09003 * 109.35332 * 65.50588 * 17 16 5 44 44 H 0.97001 * 119.99864 * 264.93268 * 20 18 17 45 45 H 0.96991 * 120.00385 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 1.2498 5 7 3.5046 -0.8281 1.1703 6 6 4.2807 -0.3840 2.1787 7 8 3.7695 0.0492 3.1945 8 6 5.7415 -0.4230 2.0521 9 6 6.6013 0.5671 2.3999 10 7 7.8612 0.2851 2.1811 11 6 8.1317 -0.8737 1.6719 12 6 9.5182 -1.3706 1.3532 13 6 10.6995 -0.5264 1.8355 14 6 10.3437 -0.5650 0.3479 15 16 6.6936 -1.7611 1.4134 16 6 4.1062 -1.4203 -0.0322 17 6 3.5715 -0.6942 -1.2653 18 6 2.0416 -0.7229 -1.2481 19 1 1.6979 -1.7573 -1.2350 20 7 1.5273 -0.0532 -2.4453 21 6 1.3979 -0.7497 -3.6172 22 1 1.6745 -1.7928 -3.6588 23 6 0.9101 -0.1152 -4.7514 24 7 0.7862 -0.7844 -5.8779 25 14 0.4309 1.6889 -4.6792 26 1 1.6083 2.5277 -5.0192 27 1 -0.6605 1.9504 -5.6516 28 1 -0.0358 2.0227 -3.3096 29 1 -0.3634 0.5128 0.8905 30 1 -0.3633 0.5149 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6057 -1.7214 1.2982 33 1 1.7631 -0.1575 2.1390 34 1 6.2748 1.5067 2.8205 35 1 9.6406 -2.4537 1.3517 36 1 10.4739 0.3883 2.3838 37 1 11.5994 -1.0540 2.1517 38 1 11.0095 -1.1181 -0.3146 39 1 9.8839 0.3245 -0.0828 40 1 5.1901 -1.3141 0.0113 41 1 3.8425 -2.4763 -0.0905 42 1 3.9347 -1.1888 -2.1662 43 1 3.9161 0.3399 -1.2533 44 1 1.2785 0.8836 -2.4078 45 1 0.4450 -0.3412 -6.6703 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036260379.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:23 Heat of formation + Delta-G solvation = 34.239316 kcal Electronic energy + Delta-G solvation = -26612.495652 eV Core-core repulsion = 22950.279517 eV Total energy + Delta-G solvation = -3662.216135 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.64833 -40.76604 -39.12867 -37.77318 -36.37401 -34.59714 -33.31513 -31.78999 -31.42530 -28.28991 -27.39137 -26.54137 -24.40016 -23.73795 -23.25251 -23.07562 -22.19449 -21.19567 -19.75114 -19.54287 -19.28493 -18.02469 -17.48280 -16.86299 -16.73580 -16.32630 -16.07461 -15.65208 -15.51057 -15.35231 -15.30475 -14.90045 -14.83767 -14.41823 -14.19251 -13.75974 -13.55051 -13.20680 -13.14387 -12.96774 -12.89622 -12.71250 -12.47604 -12.37790 -12.18531 -12.07320 -11.91019 -11.86298 -11.77893 -11.64898 -11.28805 -11.22258 -10.97348 -10.74884 -10.31287 -9.94729 -9.73219 -9.27753 -8.00033 -5.32071 -0.80913 -0.01672 0.43552 1.32496 1.38017 1.39122 1.46547 1.65212 1.96838 2.49011 2.83106 3.01796 3.31260 3.34833 3.50401 3.71955 3.72927 3.88202 3.89052 3.95822 4.04775 4.16879 4.17585 4.27764 4.29928 4.42717 4.52507 4.67952 4.71566 4.76646 4.80962 4.86146 4.88366 4.96398 4.97656 5.11326 5.14871 5.19911 5.29489 5.33717 5.39174 5.53894 5.80311 6.12377 6.24084 6.52465 6.83429 7.09917 7.86468 8.04676 9.21392 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013981 B = 0.003140 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.210762 B = 8916.218790 C =10128.229347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 H 0.063 0.937 4 C 0.127 3.873 5 N -0.597 5.597 6 C 0.598 3.402 7 O -0.563 6.563 8 C -0.320 4.320 9 C 0.111 3.889 10 N -0.499 5.499 11 C 0.075 3.925 12 C -0.116 4.116 13 C -0.145 4.145 14 C -0.148 4.148 15 S 0.237 5.763 16 C 0.104 3.896 17 C -0.141 4.141 18 C 0.183 3.817 19 H 0.054 0.946 20 N -0.747 5.747 21 C -0.217 4.217 22 H 0.064 0.936 23 C -0.061 4.061 24 N -0.983 5.983 25 Si 0.945 3.055 26 H -0.284 1.284 27 H -0.300 1.300 28 H -0.253 1.253 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.185 0.815 35 H 0.155 0.845 36 H 0.091 0.909 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.051 0.949 44 H 0.362 0.638 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.380 -2.835 18.047 25.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.124 4.124 3 H 0.081 0.919 4 C 0.005 3.995 5 N -0.328 5.328 6 C 0.385 3.615 7 O -0.444 6.444 8 C -0.444 4.444 9 C -0.047 4.047 10 N -0.213 5.213 11 C -0.198 4.198 12 C -0.138 4.138 13 C -0.184 4.184 14 C -0.187 4.187 15 S 0.497 5.503 16 C -0.020 4.020 17 C -0.182 4.182 18 C 0.075 3.925 19 H 0.072 0.928 20 N -0.389 5.389 21 C -0.348 4.348 22 H 0.082 0.918 23 C -0.253 4.253 24 N -0.634 5.634 25 Si 0.773 3.227 26 H -0.211 1.211 27 H -0.227 1.227 28 H -0.178 1.178 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.202 0.798 35 H 0.173 0.827 36 H 0.109 0.891 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.195 0.805 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.283 -3.498 18.142 25.300 hybrid contribution -0.956 2.133 -0.339 2.362 sum 16.327 -1.365 17.804 24.195 Atomic orbital electron populations 1.21635 0.93369 1.02544 1.01659 1.21681 0.97134 0.99501 0.94117 0.91894 1.21737 0.77497 1.02073 0.98213 1.48082 1.07460 1.59596 1.17634 1.16974 0.84596 0.77118 0.82837 1.90800 1.74809 1.48664 1.30107 1.25587 0.98621 1.02644 1.17546 1.22133 0.85738 1.00103 0.96685 1.66155 1.19641 1.18415 1.17079 1.27134 1.01437 0.93046 0.98178 1.20901 0.83936 0.99925 1.08999 1.23078 0.96911 1.01319 0.97050 1.23142 1.01199 1.01272 0.93066 1.83815 0.95782 1.16595 1.54071 1.22122 0.98514 0.98377 0.82977 1.22368 0.98423 1.00371 0.97068 1.20401 0.91373 0.95856 0.84880 0.92756 1.42782 1.78300 1.10231 1.07578 1.19003 1.33762 0.94805 0.87244 0.91829 1.25364 1.02735 1.01724 0.95462 1.69855 1.54482 1.37631 1.01472 0.85563 0.77511 0.81700 0.77909 1.21093 1.22675 1.17772 0.91154 0.93656 0.92027 0.89172 0.88942 0.79779 0.82724 0.89092 0.85551 0.85249 0.89766 0.89123 0.88701 0.91125 0.93024 0.80466 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 9.03 71.98 0.65 -3.05 16 2 C -0.10 -2.98 2.46 -10.72 -0.03 -3.01 16 3 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 4 C 0.13 3.17 5.71 86.36 0.49 3.67 16 5 N -0.60 -15.34 2.98 -824.47 -2.46 -17.80 16 6 C 0.60 16.84 7.57 86.45 0.65 17.49 16 7 O -0.56 -19.11 16.52 -4.32 -0.07 -19.18 16 8 C -0.32 -7.78 5.53 23.88 0.13 -7.64 16 9 C 0.11 2.67 11.30 84.23 0.95 3.62 16 10 N -0.50 -11.38 9.98 -190.30 -1.90 -13.28 16 11 C 0.08 1.40 6.96 88.46 0.62 2.02 16 12 C -0.12 -1.43 6.28 -11.54 -0.07 -1.51 16 13 C -0.14 -1.60 10.12 30.59 0.31 -1.29 16 14 C -0.15 -1.63 10.23 30.60 0.31 -1.31 16 15 S 0.24 4.25 19.97 -56.49 -1.13 3.12 16 16 C 0.10 2.46 5.88 86.22 0.51 2.96 16 17 C -0.14 -4.32 5.64 30.52 0.17 -4.15 16 18 C 0.18 6.24 2.20 45.02 0.10 6.34 16 19 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 20 N -0.75 -32.52 4.22 -322.83 -1.36 -33.88 16 21 C -0.22 -11.65 10.41 84.03 0.87 -10.78 16 22 H 0.06 3.71 8.06 -2.91 -0.02 3.68 16 23 C -0.06 -3.51 5.50 84.86 0.47 -3.05 16 24 N -0.98 -61.58 13.97 21.65 0.30 -61.28 16 25 Si 0.94 44.84 27.74 68.60 1.90 46.74 16 26 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 27 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 28 H -0.25 -10.86 6.52 99.48 0.65 -10.21 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.04 1.47 7.37 -2.39 -0.02 1.45 16 31 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.09 2.39 7.02 -2.39 -0.02 2.37 16 34 H 0.19 4.13 8.06 -2.91 -0.02 4.10 16 35 H 0.16 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.09 1.37 7.84 -2.38 -0.02 1.35 16 37 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.13 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.09 1.95 3.96 -16.47 -0.07 1.88 16 41 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 42 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.36 15.66 5.36 -92.71 -0.50 15.16 16 45 H 0.26 15.40 8.31 -92.72 -0.77 14.63 16 Total: -1.00 -70.45 374.52 1.83 -68.62 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 0.40 Total: 26.61 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 6.14 Total: 0.32 kcal Atomic # 7 Polarization: -120.82 SS G_CDS: -5.41 Total: -126.23 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.07 Total: -19.18 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.90 Total: 46.74 kcal Atomic # 16 Polarization: 4.25 SS G_CDS: -1.13 Total: 3.12 kcal Total: -70.45 1.83 -68.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036260379.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.859 kcal (2) G-P(sol) polarization free energy of solvation -70.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds