Wall clock time and date at job start Tue Mar 31 2020 19:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.49327 * 2 1 4 4 C 1.53190 * 109.49686 * 239.93768 * 2 1 3 5 5 N 1.46926 * 108.77136 * 185.41295 * 4 2 1 6 6 C 1.34781 * 120.63161 * 233.60505 * 5 4 2 7 7 O 1.21684 * 119.99865 * 356.39149 * 6 5 4 8 8 C 1.46678 * 120.00010 * 176.39120 * 6 5 4 9 9 C 1.35669 * 126.12882 * 223.79603 * 8 6 5 10 10 N 1.30947 * 114.18797 * 179.82626 * 9 8 6 11 11 C 1.29425 * 117.36556 * 0.47986 * 10 9 8 12 12 C 1.50694 * 124.80526 * 179.76738 * 11 10 9 13 13 C 1.53009 * 117.49898 * 8.70629 * 12 11 10 14 14 C 1.53003 * 117.49854 * 300.04964 * 12 11 10 15 15 S 1.70950 * 110.39127 * 359.73275 * 11 10 9 16 16 C 1.46924 * 118.74046 * 53.60859 * 5 4 2 17 17 C 1.53189 * 108.77586 * 306.38946 * 16 5 4 18 18 C 1.53039 * 109.31117 * 54.63689 * 17 16 5 19 19 H 1.09010 * 109.46304 * 178.61639 * 18 17 16 20 20 N 1.46498 * 109.46590 * 58.65660 * 18 17 16 21 21 C 1.36933 * 120.00020 * 84.92814 * 20 18 17 22 22 H 1.07991 * 120.00349 * 0.02562 * 21 20 18 23 23 C 1.38816 * 119.99860 * 180.02562 * 21 20 18 24 24 N 1.31619 * 120.00022 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00033 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47115 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47267 * 119.99815 * 25 23 21 28 28 H 1.48506 * 109.46947 * 239.99659 * 25 23 21 29 29 H 1.08994 * 109.46990 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47425 * 300.06814 * 1 2 3 31 31 H 1.09006 * 109.46817 * 60.06455 * 1 2 3 32 32 H 1.08999 * 109.58527 * 305.19533 * 4 2 1 33 33 H 1.08998 * 109.58717 * 65.62621 * 4 2 1 34 34 H 1.07997 * 122.89911 * 0.02562 * 9 8 6 35 35 H 1.09002 * 115.55400 * 154.37152 * 12 11 10 36 36 H 1.09005 * 117.49398 * 359.97438 * 13 12 11 37 37 H 1.08995 * 117.49701 * 145.01438 * 13 12 11 38 38 H 1.08998 * 117.49537 * 214.97669 * 14 12 11 39 39 H 1.08993 * 117.50012 * 359.97438 * 14 12 11 40 40 H 1.09002 * 109.59221 * 186.60065 * 16 5 4 41 41 H 1.09006 * 109.59095 * 66.17743 * 16 5 4 42 42 H 1.08998 * 109.49799 * 294.68291 * 17 16 5 43 43 H 1.09006 * 109.50090 * 174.58557 * 17 16 5 44 44 H 0.97003 * 119.99865 * 264.93755 * 20 18 17 45 45 H 0.97001 * 120.00288 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5046 -0.8287 -1.1698 6 6 4.2812 -0.3853 -2.1782 7 8 3.7705 0.0475 -3.1943 8 6 5.7419 -0.4244 -2.0507 9 6 6.6024 0.5633 -2.4038 10 7 7.8622 0.2810 -2.1846 11 6 8.1327 -0.8795 -1.6795 12 6 9.5194 -1.3787 -1.3652 13 6 10.6717 -0.3777 -1.4718 14 6 10.5138 -1.4785 -2.5237 15 16 6.6943 -1.7655 -1.4185 16 6 4.1053 -1.4266 0.0304 17 6 3.5709 -0.6953 1.2658 18 6 2.0408 -0.7235 1.2481 19 1 1.6581 -0.2251 2.1389 20 7 1.5783 -2.1134 1.2302 21 6 1.4482 -2.8069 2.4038 22 1 1.6861 -2.3291 3.3426 23 6 1.0104 -4.1241 2.3867 24 7 0.7209 -4.7066 1.2425 25 14 0.8322 -5.0699 3.9876 26 1 1.2182 -4.1960 5.1245 27 1 -0.5787 -5.5028 4.1524 28 1 1.7159 -6.2630 3.9586 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5149 0.8893 31 1 -0.3633 0.5129 -0.8906 32 1 1.6053 -1.7212 -1.2985 33 1 1.7638 -0.1572 -2.1389 34 1 6.2763 1.5023 -2.8260 35 1 9.5807 -2.1351 -0.5827 36 1 10.4267 0.6418 -1.7698 37 1 11.4911 -0.4758 -0.7598 38 1 11.2295 -2.3004 -2.5032 39 1 10.1649 -1.1835 -3.5132 40 1 5.1896 -1.3245 -0.0140 41 1 3.8376 -2.4818 0.0861 42 1 3.9159 0.3385 1.2542 43 1 3.9334 -1.1903 2.1668 44 1 1.3644 -2.5425 0.3870 45 1 0.4146 -5.6269 1.2305 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036260384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:26 Heat of formation + Delta-G solvation = 51.896608 kcal Electronic energy + Delta-G solvation = -26931.892991 eV Core-core repulsion = 23270.442534 eV Total energy + Delta-G solvation = -3661.450457 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.43189 -39.66474 -37.76879 -37.02064 -34.37377 -32.95431 -31.49427 -30.55010 -29.23648 -27.17244 -26.03930 -24.92982 -23.55191 -22.87071 -22.67483 -21.74211 -21.12451 -18.94398 -18.65540 -17.98798 -17.41079 -16.72446 -16.33770 -15.91372 -15.06269 -14.93658 -14.65142 -14.56368 -14.30973 -14.08932 -13.98963 -13.52685 -13.34322 -12.93709 -12.59335 -12.49436 -12.30962 -11.85347 -11.70923 -11.62606 -11.47520 -11.26933 -11.15106 -10.96300 -10.94851 -10.84740 -10.63763 -10.55035 -10.20007 -10.02115 -9.89814 -9.73334 -9.60552 -9.29086 -9.00204 -8.83614 -8.33623 -7.02711 -5.83416 -3.12189 0.21080 0.99452 1.46554 2.40418 2.95238 3.22649 3.38171 3.44658 3.46551 3.51787 3.82971 4.44569 4.49983 4.53506 4.58460 4.64723 5.05878 5.10221 5.21403 5.24650 5.30896 5.31908 5.45801 5.47463 5.52369 5.66048 5.67855 5.75327 5.84977 5.86265 5.96596 5.99833 6.01226 6.16955 6.26429 6.33511 6.44695 6.54569 6.62319 6.69725 6.86053 6.93629 7.45820 7.56291 7.65278 8.17729 8.34813 9.46686 10.02583 10.37797 11.38935 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013432 B = 0.003413 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.023708 B = 8202.039404 C = 9609.169549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 H 0.066 0.934 4 C 0.121 3.879 5 N -0.591 5.591 6 C 0.591 3.409 7 O -0.536 6.536 8 C -0.285 4.285 9 C 0.106 3.894 10 N -0.479 5.479 11 C 0.065 3.935 12 C -0.101 4.101 13 C -0.148 4.148 14 C -0.155 4.155 15 S 0.208 5.792 16 C 0.104 3.896 17 C -0.147 4.147 18 C 0.179 3.821 19 H 0.053 0.947 20 N -0.719 5.719 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.904 3.096 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.183 0.817 35 H 0.130 0.870 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.049 0.951 43 H 0.076 0.924 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.718 8.237 -5.133 18.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 H 0.085 0.915 4 C -0.001 4.001 5 N -0.322 5.322 6 C 0.377 3.623 7 O -0.415 6.415 8 C -0.409 4.409 9 C -0.050 4.050 10 N -0.193 5.193 11 C -0.209 4.209 12 C -0.123 4.123 13 C -0.187 4.187 14 C -0.194 4.194 15 S 0.468 5.532 16 C -0.019 4.019 17 C -0.189 4.189 18 C 0.068 3.932 19 H 0.071 0.929 20 N -0.361 5.361 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.207 4.207 24 N -0.580 5.580 25 Si 0.735 3.265 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.199 0.801 35 H 0.147 0.853 36 H 0.127 0.873 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.117 0.883 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.068 0.932 43 H 0.095 0.905 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.606 7.699 -5.176 18.155 hybrid contribution -0.469 -0.008 0.400 0.616 sum 15.137 7.691 -4.776 17.638 Atomic orbital electron populations 1.21664 0.94005 1.03277 1.00540 1.21719 0.96662 0.98885 0.95602 0.91513 1.21730 0.77545 1.01951 0.98879 1.48019 1.07380 1.58969 1.17805 1.16791 0.83809 0.78286 0.83427 1.90809 1.73963 1.47882 1.28878 1.25755 0.99498 1.00679 1.14989 1.21952 0.85453 0.99978 0.97664 1.66082 1.19959 1.17286 1.15977 1.26540 1.00145 0.93657 1.00536 1.20561 0.84232 1.04115 1.03344 1.23028 0.97639 0.96408 1.01645 1.23068 1.00189 1.01643 0.94481 1.84320 0.96367 1.17721 1.54818 1.22084 0.96433 0.99373 0.84041 1.22516 1.00575 0.98641 0.97137 1.20219 0.90601 0.87431 0.94932 0.92913 1.42490 1.78950 1.07683 1.07003 1.19256 1.37225 0.93841 0.86562 0.91169 1.24708 1.02223 0.97188 0.96613 1.69656 1.51676 1.13036 1.23608 0.86170 0.77311 0.79972 0.83027 1.20624 1.21963 1.21961 0.90966 0.92702 0.93689 0.90241 0.89518 0.80055 0.85260 0.87323 0.87984 0.87738 0.88255 0.91273 0.89077 0.93227 0.90506 0.78105 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.06 37.16 0.34 -1.81 16 2 C -0.11 -1.75 2.67 -90.50 -0.24 -1.99 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 4 C 0.12 2.03 5.41 -3.71 -0.02 2.01 16 5 N -0.59 -9.76 2.97 -174.31 -0.52 -10.28 16 6 C 0.59 9.97 7.57 -12.85 -0.10 9.87 16 7 O -0.54 -10.38 16.51 5.20 0.09 -10.29 16 8 C -0.28 -4.13 5.53 -37.10 -0.21 -4.33 16 9 C 0.11 1.43 11.30 -18.85 -0.21 1.21 16 10 N -0.48 -6.16 9.98 -11.50 -0.11 -6.28 16 11 C 0.06 0.75 6.96 -13.29 -0.09 0.65 16 12 C -0.10 -0.87 6.28 -91.77 -0.58 -1.44 16 13 C -0.15 -1.10 10.12 -26.69 -0.27 -1.37 16 14 C -0.15 -1.12 10.24 -26.69 -0.27 -1.39 16 15 S 0.21 2.55 19.98 -107.50 -2.15 0.40 16 16 C 0.10 1.67 5.66 -3.71 -0.02 1.65 16 17 C -0.15 -2.42 5.78 -26.61 -0.15 -2.57 16 18 C 0.18 3.25 2.53 -67.89 -0.17 3.08 16 19 H 0.05 0.99 8.08 -51.92 -0.42 0.57 16 20 N -0.72 -16.11 3.64 -53.38 -0.19 -16.31 16 21 C -0.24 -6.06 9.93 -15.06 -0.15 -6.21 16 22 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 23 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 24 N -0.93 -26.56 13.06 55.49 0.72 -25.84 16 25 Si 0.90 21.40 29.55 -169.99 -5.02 16.38 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H 0.07 1.31 7.53 -51.93 -0.39 0.92 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.46 6.64 -51.93 -0.34 1.12 16 33 H 0.09 1.44 7.02 -51.93 -0.36 1.08 16 34 H 0.18 2.18 8.06 -52.49 -0.42 1.76 16 35 H 0.13 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.11 0.95 7.84 -51.93 -0.41 0.54 16 37 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.99 3.96 -29.86 -0.12 0.88 16 41 H 0.09 1.69 7.74 -51.93 -0.40 1.29 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 44 H 0.38 9.24 5.92 -40.82 -0.24 9.00 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 373.74 15.07 5.63 5.63 Total: -1.00 -29.89 373.74 -10.26 -40.16 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -6.46 Total: 9.47 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -2.24 Total: -3.04 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: -0.10 Total: -58.70 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -2.15 Total: 0.40 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.89 -10.26 -40.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036260384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.052 kcal (2) G-P(sol) polarization free energy of solvation -29.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds