Wall clock time and date at job start Tue Mar 31 2020 19:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.49327 * 2 1 4 4 C 1.53190 * 109.49686 * 239.93768 * 2 1 3 5 5 N 1.46926 * 108.77136 * 185.41295 * 4 2 1 6 6 C 1.34781 * 120.63161 * 233.60505 * 5 4 2 7 7 O 1.21684 * 119.99865 * 356.39149 * 6 5 4 8 8 C 1.46678 * 120.00010 * 176.39120 * 6 5 4 9 9 C 1.35669 * 126.12882 * 223.79603 * 8 6 5 10 10 N 1.30947 * 114.18797 * 179.82626 * 9 8 6 11 11 C 1.29425 * 117.36556 * 0.47986 * 10 9 8 12 12 C 1.50694 * 124.80526 * 179.76738 * 11 10 9 13 13 C 1.53009 * 117.49898 * 8.70629 * 12 11 10 14 14 C 1.53003 * 117.49854 * 300.04964 * 12 11 10 15 15 S 1.70950 * 110.39127 * 359.73275 * 11 10 9 16 16 C 1.46924 * 118.74046 * 53.60859 * 5 4 2 17 17 C 1.53189 * 108.77586 * 306.38946 * 16 5 4 18 18 C 1.53039 * 109.31117 * 54.63689 * 17 16 5 19 19 H 1.09010 * 109.46304 * 178.61639 * 18 17 16 20 20 N 1.46498 * 109.46590 * 58.65660 * 18 17 16 21 21 C 1.36933 * 120.00020 * 84.92814 * 20 18 17 22 22 H 1.07991 * 120.00349 * 0.02562 * 21 20 18 23 23 C 1.38816 * 119.99860 * 180.02562 * 21 20 18 24 24 N 1.31619 * 120.00022 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00033 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47115 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47267 * 119.99815 * 25 23 21 28 28 H 1.48506 * 109.46947 * 239.99659 * 25 23 21 29 29 H 1.08994 * 109.46990 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47425 * 300.06814 * 1 2 3 31 31 H 1.09006 * 109.46817 * 60.06455 * 1 2 3 32 32 H 1.08999 * 109.58527 * 305.19533 * 4 2 1 33 33 H 1.08998 * 109.58717 * 65.62621 * 4 2 1 34 34 H 1.07997 * 122.89911 * 0.02562 * 9 8 6 35 35 H 1.09002 * 115.55400 * 154.37152 * 12 11 10 36 36 H 1.09005 * 117.49398 * 359.97438 * 13 12 11 37 37 H 1.08995 * 117.49701 * 145.01438 * 13 12 11 38 38 H 1.08998 * 117.49537 * 214.97669 * 14 12 11 39 39 H 1.08993 * 117.50012 * 359.97438 * 14 12 11 40 40 H 1.09002 * 109.59221 * 186.60065 * 16 5 4 41 41 H 1.09006 * 109.59095 * 66.17743 * 16 5 4 42 42 H 1.08998 * 109.49799 * 294.68291 * 17 16 5 43 43 H 1.09006 * 109.50090 * 174.58557 * 17 16 5 44 44 H 0.97003 * 119.99865 * 264.93755 * 20 18 17 45 45 H 0.97001 * 120.00288 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5046 -0.8287 -1.1698 6 6 4.2812 -0.3853 -2.1782 7 8 3.7705 0.0475 -3.1943 8 6 5.7419 -0.4244 -2.0507 9 6 6.6024 0.5633 -2.4038 10 7 7.8622 0.2810 -2.1846 11 6 8.1327 -0.8795 -1.6795 12 6 9.5194 -1.3787 -1.3652 13 6 10.6717 -0.3777 -1.4718 14 6 10.5138 -1.4785 -2.5237 15 16 6.6943 -1.7655 -1.4185 16 6 4.1053 -1.4266 0.0304 17 6 3.5709 -0.6953 1.2658 18 6 2.0408 -0.7235 1.2481 19 1 1.6581 -0.2251 2.1389 20 7 1.5783 -2.1134 1.2302 21 6 1.4482 -2.8069 2.4038 22 1 1.6861 -2.3291 3.3426 23 6 1.0104 -4.1241 2.3867 24 7 0.7209 -4.7066 1.2425 25 14 0.8322 -5.0699 3.9876 26 1 1.2182 -4.1960 5.1245 27 1 -0.5787 -5.5028 4.1524 28 1 1.7159 -6.2630 3.9586 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5149 0.8893 31 1 -0.3633 0.5129 -0.8906 32 1 1.6053 -1.7212 -1.2985 33 1 1.7638 -0.1572 -2.1389 34 1 6.2763 1.5023 -2.8260 35 1 9.5807 -2.1351 -0.5827 36 1 10.4267 0.6418 -1.7698 37 1 11.4911 -0.4758 -0.7598 38 1 11.2295 -2.3004 -2.5032 39 1 10.1649 -1.1835 -3.5132 40 1 5.1896 -1.3245 -0.0140 41 1 3.8376 -2.4818 0.0861 42 1 3.9159 0.3385 1.2542 43 1 3.9334 -1.1903 2.1668 44 1 1.3644 -2.5425 0.3870 45 1 0.4146 -5.6269 1.2305 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036260384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:26 Heat of formation + Delta-G solvation = 35.165323 kcal Electronic energy + Delta-G solvation = -26932.618514 eV Core-core repulsion = 23270.442534 eV Total energy + Delta-G solvation = -3662.175980 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.64882 -40.77402 -39.13565 -37.76311 -35.95732 -34.56643 -33.07061 -31.61906 -30.95935 -28.26931 -27.30743 -26.35899 -25.33548 -23.77176 -23.25269 -23.13207 -22.24034 -20.26405 -19.63248 -19.33978 -19.17521 -17.94091 -17.44400 -16.96305 -16.55140 -16.22153 -15.98270 -15.79651 -15.50944 -15.41261 -15.12560 -14.94609 -14.75683 -14.35901 -14.19209 -13.67058 -13.20984 -13.10798 -12.99342 -12.89033 -12.73621 -12.67852 -12.48137 -12.36782 -12.08603 -12.04733 -11.97155 -11.89450 -11.61679 -11.60064 -11.24787 -11.17635 -10.91912 -10.73311 -10.32111 -9.88403 -9.68546 -8.92742 -7.87901 -5.14410 -0.80306 -0.01682 0.46477 1.33463 1.49806 1.51712 1.59871 1.71935 1.96316 2.60547 2.83117 3.01865 3.36998 3.46051 3.72509 3.80023 3.84416 3.88380 3.96000 4.04438 4.05688 4.16940 4.26070 4.31356 4.33282 4.48473 4.55836 4.66288 4.80147 4.80580 4.89560 4.90321 4.96790 4.99779 5.11222 5.14902 5.16847 5.22053 5.26294 5.30207 5.44195 5.56617 5.61905 6.19751 6.33727 6.51052 6.85459 7.41550 8.16425 8.40473 9.35421 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013432 B = 0.003413 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.023708 B = 8202.039404 C = 9609.169549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 H 0.087 0.913 4 C 0.125 3.875 5 N -0.591 5.591 6 C 0.594 3.406 7 O -0.567 6.567 8 C -0.317 4.317 9 C 0.117 3.883 10 N -0.494 5.494 11 C 0.081 3.919 12 C -0.120 4.120 13 C -0.141 4.141 14 C -0.145 4.145 15 S 0.215 5.785 16 C 0.112 3.888 17 C -0.140 4.140 18 C 0.173 3.827 19 H 0.052 0.948 20 N -0.724 5.724 21 C -0.225 4.225 22 H 0.076 0.924 23 C -0.072 4.072 24 N -0.968 5.968 25 Si 0.962 3.038 26 H -0.266 1.266 27 H -0.301 1.301 28 H -0.298 1.298 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.191 0.809 35 H 0.151 0.849 36 H 0.093 0.907 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.374 0.626 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.067 9.355 -4.224 20.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.118 4.118 3 H 0.106 0.894 4 C 0.002 3.998 5 N -0.322 5.322 6 C 0.381 3.619 7 O -0.448 6.448 8 C -0.441 4.441 9 C -0.041 4.041 10 N -0.208 5.208 11 C -0.192 4.192 12 C -0.142 4.142 13 C -0.180 4.180 14 C -0.184 4.184 15 S 0.475 5.525 16 C -0.012 4.012 17 C -0.181 4.181 18 C 0.065 3.935 19 H 0.070 0.930 20 N -0.366 5.366 21 C -0.357 4.357 22 H 0.094 0.906 23 C -0.264 4.264 24 N -0.620 5.620 25 Si 0.793 3.207 26 H -0.191 1.191 27 H -0.229 1.229 28 H -0.226 1.226 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.208 0.792 35 H 0.168 0.832 36 H 0.112 0.888 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.207 0.793 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 17.973 8.856 -4.233 20.479 hybrid contribution -1.070 -0.273 0.072 1.107 sum 16.903 8.583 -4.161 19.409 Atomic orbital electron populations 1.21597 0.93674 1.01647 1.01963 1.21647 0.96861 0.99353 0.93968 0.89437 1.21620 0.77952 1.00776 0.99415 1.48034 1.07234 1.58931 1.17961 1.17038 0.84766 0.77382 0.82699 1.90780 1.74903 1.49316 1.29850 1.25515 0.98381 1.02365 1.17861 1.22174 0.85556 1.00039 0.96308 1.66183 1.19483 1.17971 1.17185 1.27139 1.01133 0.92748 0.98165 1.20892 0.82818 1.05473 1.04988 1.23102 0.97386 0.95463 1.02080 1.23161 0.99552 1.02312 0.93400 1.84256 0.96493 1.16932 1.54842 1.21977 0.97687 0.97615 0.83870 1.22400 0.98790 1.00009 0.96900 1.20431 0.91827 0.85324 0.95966 0.92978 1.42599 1.79034 1.09220 1.05706 1.19593 1.34640 0.93785 0.87653 0.90580 1.25373 1.03585 0.98439 0.99034 1.69805 1.53881 1.12852 1.25417 0.85228 0.76350 0.78640 0.80475 1.19090 1.22920 1.22571 0.94027 0.91978 0.91580 0.92557 0.89325 0.79186 0.83166 0.88815 0.85559 0.85217 0.89508 0.89230 0.91934 0.90852 0.90975 0.79289 0.94397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 9.06 71.98 0.65 -3.36 16 2 C -0.10 -3.07 2.67 -10.71 -0.03 -3.10 16 3 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 4 C 0.12 4.21 5.41 86.36 0.47 4.68 16 5 N -0.59 -19.49 2.97 -823.62 -2.45 -21.94 16 6 C 0.59 19.95 7.57 86.45 0.65 20.61 16 7 O -0.57 -22.09 16.51 -4.30 -0.07 -22.16 16 8 C -0.32 -8.97 5.53 23.88 0.13 -8.84 16 9 C 0.12 3.01 11.30 84.23 0.95 3.96 16 10 N -0.49 -11.97 9.98 -190.31 -1.90 -13.87 16 11 C 0.08 1.72 6.96 88.46 0.62 2.34 16 12 C -0.12 -1.73 6.28 -11.54 -0.07 -1.80 16 13 C -0.14 -1.69 10.12 30.62 0.31 -1.38 16 14 C -0.15 -1.68 10.24 30.62 0.31 -1.37 16 15 S 0.21 5.00 19.98 -56.49 -1.13 3.87 16 16 C 0.11 3.55 5.66 86.36 0.49 4.04 16 17 C -0.14 -4.40 5.78 30.67 0.18 -4.22 16 18 C 0.17 6.16 2.53 45.02 0.11 6.28 16 19 H 0.05 1.88 8.08 -2.38 -0.02 1.86 16 20 N -0.72 -32.81 3.64 -322.81 -1.17 -33.99 16 21 C -0.22 -11.45 9.93 84.04 0.83 -10.61 16 22 H 0.08 3.74 7.83 -2.92 -0.02 3.71 16 23 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 24 N -0.97 -56.76 13.06 21.65 0.28 -56.48 16 25 Si 0.96 44.41 29.55 68.60 2.03 46.44 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 28 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 29 H 0.04 1.53 7.53 -2.39 -0.02 1.51 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.06 2.17 6.64 -2.39 -0.02 2.15 16 33 H 0.09 2.96 7.02 -2.39 -0.02 2.95 16 34 H 0.19 4.39 8.06 -2.91 -0.02 4.37 16 35 H 0.15 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.09 1.45 7.84 -2.38 -0.02 1.43 16 37 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.09 2.49 3.96 -16.42 -0.06 2.42 16 41 H 0.06 2.37 7.74 -2.38 -0.02 2.36 16 42 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 44 H 0.37 18.58 5.92 -92.71 -0.55 18.03 16 45 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -64.93 373.74 2.07 -62.86 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: 0.41 Total: 31.48 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 6.08 Total: 3.77 kcal Atomic # 7 Polarization: -121.03 SS G_CDS: -5.24 Total: -126.27 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.07 Total: -22.16 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 5.00 SS G_CDS: -1.13 Total: 3.87 kcal Total: -64.93 2.07 -62.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036260384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.028 kcal (2) G-P(sol) polarization free energy of solvation -64.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds