Wall clock time and date at job start Tue Mar 31 2020 19:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.52376 * 2 1 4 4 C 1.53194 * 109.49426 * 239.92086 * 2 1 3 5 5 N 1.46932 * 108.77624 * 185.41250 * 4 2 1 6 6 C 1.34779 * 120.62835 * 233.63358 * 5 4 2 7 7 O 1.21685 * 119.99942 * 356.31545 * 6 5 4 8 8 C 1.46677 * 119.99484 * 176.32035 * 6 5 4 9 9 C 1.35659 * 126.13382 * 44.33636 * 8 6 5 10 10 N 1.30943 * 114.19577 * 179.82000 * 9 8 6 11 11 C 1.29432 * 117.36131 * 0.48382 * 10 9 8 12 12 C 1.50703 * 124.80562 * 179.69078 * 11 10 9 13 13 C 1.53002 * 117.49771 * 8.78917 * 12 11 10 14 14 C 1.52998 * 117.50092 * 300.13007 * 12 11 10 15 15 S 1.70954 * 110.39043 * 359.73077 * 11 10 9 16 16 C 1.46923 * 118.73728 * 53.60740 * 5 4 2 17 17 C 1.53195 * 108.77416 * 306.39328 * 16 5 4 18 18 C 1.53037 * 109.49868 * 120.08579 * 2 1 3 19 19 H 1.08998 * 109.45174 * 61.30205 * 18 2 1 20 20 N 1.46502 * 109.46053 * 301.33198 * 18 2 1 21 21 C 1.36932 * 120.00261 * 154.93459 * 20 18 2 22 22 H 1.07999 * 119.99795 * 0.02562 * 21 20 18 23 23 C 1.38814 * 120.00055 * 180.02562 * 21 20 18 24 24 N 1.31620 * 119.99801 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99881 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47412 * 179.97438 * 25 23 21 27 27 H 1.48508 * 109.47312 * 299.99518 * 25 23 21 28 28 H 1.48501 * 109.47344 * 59.99348 * 25 23 21 29 29 H 1.09001 * 109.47225 * 299.91722 * 1 2 3 30 30 H 1.08997 * 109.47592 * 59.91771 * 1 2 3 31 31 H 1.09004 * 109.47468 * 179.91706 * 1 2 3 32 32 H 1.09006 * 109.58776 * 65.62773 * 4 2 1 33 33 H 1.09001 * 109.70510 * 305.26771 * 4 2 1 34 34 H 1.08005 * 122.90711 * 359.97438 * 9 8 6 35 35 H 1.08997 * 115.54478 * 154.45870 * 12 11 10 36 36 H 1.08998 * 117.49769 * 359.97438 * 13 12 11 37 37 H 1.09001 * 117.49637 * 145.01696 * 13 12 11 38 38 H 1.08997 * 117.49854 * 214.98326 * 14 12 11 39 39 H 1.09002 * 117.49599 * 359.97438 * 14 12 11 40 40 H 1.08996 * 109.58629 * 186.60969 * 16 5 4 41 41 H 1.08999 * 109.70315 * 66.24953 * 16 5 4 42 42 H 1.09000 * 109.50029 * 294.68368 * 17 16 5 43 43 H 1.09005 * 109.52422 * 174.60505 * 17 16 5 44 44 H 0.97003 * 119.99659 * 334.93596 * 20 18 2 45 45 H 0.97003 * 119.99254 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0412 -0.7238 -1.2496 5 7 3.5045 -0.8291 -1.1697 6 6 4.2810 -0.3855 -2.1781 7 8 3.7702 0.0462 -3.1947 8 6 5.7417 -0.4233 -2.0501 9 6 6.4759 -1.4566 -1.5667 10 7 7.7674 -1.2406 -1.5606 11 6 8.1808 -0.0938 -1.9955 12 6 9.6248 0.3333 -2.0566 13 6 10.6882 -0.7277 -1.7659 14 6 10.4057 0.3742 -0.7416 15 16 6.8569 0.8683 -2.4896 16 6 4.1053 -1.4267 0.0305 17 6 3.5708 -0.6950 1.2658 18 6 2.0408 -0.7232 1.2482 19 1 1.6967 -1.7573 1.2349 20 7 1.5266 -0.0531 2.4453 21 6 1.3952 -0.7497 3.6168 22 1 1.6711 -1.7930 3.6585 23 6 0.9076 -0.1148 4.7509 24 7 0.5719 1.1568 4.7001 25 14 0.7291 -1.0650 6.3492 26 1 0.1916 -0.1662 7.4020 27 1 -0.2026 -2.2036 6.1469 28 1 2.0567 -1.5806 6.7695 29 1 -0.3634 0.5125 0.8907 30 1 -0.3634 0.5151 -0.8892 31 1 -0.3634 -1.0277 -0.0015 32 1 1.7636 -0.1578 -2.1390 33 1 1.6053 -1.7215 -1.3006 34 1 6.0336 -2.3787 -1.2193 35 1 9.8599 1.0896 -2.8054 36 1 10.3433 -1.7344 -1.5299 37 1 11.6231 -0.6691 -2.3232 38 1 11.1549 1.1573 -0.6254 39 1 9.8749 0.0927 0.1679 40 1 5.1895 -1.3246 -0.0140 41 1 3.8397 -2.4823 0.0877 42 1 3.9159 0.3388 1.2539 43 1 3.9335 -1.1892 2.1672 44 1 1.2792 0.8841 2.4079 45 1 0.2314 1.6005 5.4928 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036260389.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:29 Heat of formation + Delta-G solvation = 52.148088 kcal Electronic energy + Delta-G solvation = -26517.508802 eV Core-core repulsion = 22856.069249 eV Total energy + Delta-G solvation = -3661.439552 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.69971 -39.63663 -37.70676 -37.16513 -34.69594 -33.01723 -31.55176 -30.70327 -29.35205 -27.11046 -26.10426 -24.99568 -23.41811 -22.74697 -22.53454 -21.73909 -21.08925 -19.64090 -19.06798 -18.18231 -17.15505 -16.91875 -16.21101 -16.05839 -15.13400 -15.08206 -14.80061 -14.61565 -14.38543 -14.13119 -13.77615 -13.61296 -13.34550 -13.01339 -12.60850 -12.47595 -12.28081 -11.89923 -11.84923 -11.73527 -11.57140 -11.24747 -11.16513 -11.01227 -10.95380 -10.83953 -10.68277 -10.45011 -10.28126 -10.25549 -9.80188 -9.76882 -9.66581 -9.60948 -9.00523 -8.89162 -8.57431 -6.99843 -5.80312 -3.09206 0.10592 0.85293 1.40419 2.26727 2.86809 3.05579 3.40762 3.45337 3.45686 3.46524 3.73107 4.36492 4.41879 4.45036 4.54982 4.58822 4.92597 4.98984 5.01841 5.19833 5.22555 5.29288 5.31825 5.40456 5.48096 5.55669 5.62376 5.64504 5.72135 5.78963 5.84184 5.89955 6.03074 6.10040 6.26612 6.32429 6.39537 6.45985 6.57280 6.76704 6.87879 7.00807 7.32910 7.38039 7.65266 8.02700 8.37834 9.49261 10.06266 10.41192 11.42071 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013520 B = 0.002964 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.581267 B = 9444.679750 C =10862.811524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.070 0.930 4 C 0.122 3.878 5 N -0.590 5.590 6 C 0.593 3.407 7 O -0.539 6.539 8 C -0.285 4.285 9 C 0.087 3.913 10 N -0.476 5.476 11 C 0.069 3.931 12 C -0.102 4.102 13 C -0.148 4.148 14 C -0.153 4.153 15 S 0.223 5.777 16 C 0.093 3.907 17 C -0.151 4.151 18 C 0.184 3.816 19 H 0.049 0.951 20 N -0.720 5.720 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.292 1.292 27 H -0.286 1.286 28 H -0.286 1.286 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.185 0.815 35 H 0.129 0.871 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.384 0.616 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.651 -2.652 -15.285 22.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.088 0.912 4 C 0.000 4.000 5 N -0.322 5.322 6 C 0.379 3.621 7 O -0.418 6.418 8 C -0.409 4.409 9 C -0.070 4.070 10 N -0.190 5.190 11 C -0.205 4.205 12 C -0.124 4.124 13 C -0.187 4.187 14 C -0.192 4.192 15 S 0.483 5.517 16 C -0.030 4.030 17 C -0.192 4.192 18 C 0.074 3.926 19 H 0.067 0.933 20 N -0.360 5.360 21 C -0.371 4.371 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.213 1.213 28 H -0.213 1.213 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.202 0.798 35 H 0.146 0.854 36 H 0.127 0.873 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.604 -1.858 -15.919 23.077 hybrid contribution -0.583 -1.036 1.381 1.822 sum 16.022 -2.895 -14.538 21.827 Atomic orbital electron populations 1.21656 0.93899 1.01852 1.01947 1.21752 0.96720 1.00051 0.94491 0.91202 1.21799 0.77437 1.01222 0.99589 1.47973 1.07219 1.59428 1.17553 1.16761 0.83919 0.78079 0.83368 1.90822 1.74566 1.47584 1.28786 1.25671 0.99681 1.00932 1.14655 1.22186 0.87102 0.99764 0.97957 1.66021 1.15216 1.19174 1.18550 1.26428 1.00142 0.93204 1.00703 1.20545 0.84829 1.04379 1.02632 1.23034 0.97891 0.95832 1.01921 1.23091 1.01667 1.01774 0.92703 1.83984 0.95366 1.16172 1.56200 1.22248 0.98589 0.97498 0.84692 1.22687 1.00415 1.00390 0.95697 1.20196 0.90273 0.95745 0.86434 0.93312 1.42394 1.76487 1.11383 1.05747 1.19163 1.36082 0.94071 0.87738 0.91284 1.24729 1.02008 0.96015 0.98052 1.69650 1.49881 1.09463 1.29026 0.86299 0.77751 0.78724 0.83576 1.21744 1.21286 1.21312 0.90650 0.93760 0.92971 0.89182 0.91130 0.79822 0.85359 0.87256 0.87998 0.87692 0.88029 0.89751 0.90953 0.92240 0.90431 0.78206 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.03 37.16 0.34 -1.83 16 2 C -0.11 -1.78 2.46 -90.50 -0.22 -2.01 16 3 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.12 1.75 5.71 -3.71 -0.02 1.73 16 5 N -0.59 -8.40 2.97 -174.30 -0.52 -8.92 16 6 C 0.59 9.02 7.60 -12.85 -0.10 8.93 16 7 O -0.54 -9.69 16.53 5.20 0.09 -9.61 16 8 C -0.28 -3.73 5.72 -37.10 -0.21 -3.94 16 9 C 0.09 1.02 8.98 -18.85 -0.17 0.85 16 10 N -0.48 -5.59 9.98 -11.50 -0.11 -5.71 16 11 C 0.07 0.72 6.96 -13.29 -0.09 0.63 16 12 C -0.10 -0.78 6.28 -91.77 -0.58 -1.36 16 13 C -0.15 -1.00 10.12 -26.69 -0.27 -1.27 16 14 C -0.15 -1.04 10.24 -26.69 -0.27 -1.31 16 15 S 0.22 2.49 23.17 -107.50 -2.49 0.00 16 16 C 0.09 1.21 5.59 -3.71 -0.02 1.19 16 17 C -0.15 -2.50 5.66 -26.61 -0.15 -2.65 16 18 C 0.18 3.40 2.19 -67.89 -0.15 3.25 16 19 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 20 N -0.72 -17.02 4.41 -53.39 -0.24 -17.26 16 21 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 22 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16 25 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H 0.07 1.41 7.36 -51.93 -0.38 1.03 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.33 7.02 -51.93 -0.36 0.97 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.19 1.81 6.91 -52.48 -0.36 1.45 16 35 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.11 0.89 7.84 -51.93 -0.41 0.48 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.01 4.25 -51.93 -0.22 0.79 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 44 H 0.38 9.84 7.51 -40.82 -0.31 9.53 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 377.62 15.07 5.69 5.69 Total: -1.00 -31.40 377.62 -10.71 -42.11 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -6.66 Total: 8.27 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -2.17 Total: -4.69 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: -0.14 Total: -58.62 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -2.49 Total: 0.00 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.40 -10.71 -42.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036260389.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.256 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds