Wall clock time and date at job start Tue Mar 31 2020 19:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.52078 * 2 1 4 4 C 1.53191 * 109.49811 * 239.92024 * 2 1 3 5 5 N 1.46928 * 108.77363 * 185.41105 * 4 2 1 6 6 C 1.34770 * 120.62974 * 233.62646 * 5 4 2 7 7 O 1.21626 * 120.00478 * 353.16405 * 6 5 4 8 8 C 1.47277 * 119.99847 * 173.15914 * 6 5 4 9 9 C 1.35203 * 123.13901 * 171.81032 * 8 6 5 10 10 S 1.70944 * 108.82352 * 179.97438 * 9 8 6 11 11 C 1.70769 * 91.13229 * 359.97438 * 10 9 8 12 12 C 1.50694 * 124.72365 * 180.02562 * 11 10 9 13 13 C 1.53001 * 117.49708 * 8.71896 * 12 11 10 14 14 C 1.53011 * 117.49675 * 300.05966 * 12 11 10 15 15 N 1.28657 * 110.55588 * 359.76659 * 11 10 9 16 16 C 1.46923 * 118.73748 * 53.61159 * 5 4 2 17 17 C 1.53192 * 108.77820 * 306.38847 * 16 5 4 18 18 C 1.53037 * 109.49690 * 120.07764 * 2 1 3 19 19 H 1.09001 * 109.45364 * 301.33209 * 18 2 1 20 20 N 1.46509 * 109.45677 * 61.30159 * 18 2 1 21 21 C 1.36936 * 119.99834 * 205.06926 * 20 18 2 22 22 H 1.07997 * 120.00120 * 359.97438 * 21 20 18 23 23 C 1.38805 * 120.00072 * 180.02562 * 21 20 18 24 24 N 1.31622 * 120.00104 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00203 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46994 * 269.99399 * 25 23 21 27 27 H 1.48495 * 109.47194 * 29.99264 * 25 23 21 28 28 H 1.48506 * 109.47087 * 149.99675 * 25 23 21 29 29 H 1.09004 * 109.47491 * 299.91940 * 1 2 3 30 30 H 1.09006 * 109.46948 * 59.91731 * 1 2 3 31 31 H 1.08997 * 109.47175 * 179.91468 * 1 2 3 32 32 H 1.09005 * 109.58575 * 65.62686 * 4 2 1 33 33 H 1.09000 * 109.58421 * 305.20157 * 4 2 1 34 34 H 1.07997 * 125.59191 * 359.97438 * 9 8 6 35 35 H 1.09000 * 115.55252 * 154.39239 * 12 11 10 36 36 H 1.08999 * 117.50181 * 359.97438 * 13 12 11 37 37 H 1.08997 * 117.49610 * 145.02363 * 13 12 11 38 38 H 1.09000 * 117.49954 * 214.97930 * 14 12 11 39 39 H 1.09007 * 117.49575 * 0.02562 * 14 12 11 40 40 H 1.09001 * 109.58707 * 186.59891 * 16 5 4 41 41 H 1.09006 * 109.70441 * 66.24449 * 16 5 4 42 42 H 1.08996 * 109.49326 * 294.68637 * 17 16 5 43 43 H 1.09000 * 109.50185 * 174.58926 * 17 16 5 44 44 H 0.97001 * 120.00013 * 25.06132 * 20 18 2 45 45 H 0.96996 * 120.00290 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5046 -0.8290 -1.1696 6 6 4.2811 -0.3855 -2.1779 7 8 3.7727 -0.0077 -3.2162 8 6 5.7454 -0.3583 -2.0225 9 6 6.5916 -0.0806 -3.0397 10 16 8.1968 -0.1478 -2.4559 11 6 7.6460 -0.5417 -0.8882 12 6 8.5404 -0.7822 0.3006 13 6 10.0289 -0.4668 0.1401 14 6 9.5567 -1.9217 0.2010 15 7 6.3610 -0.5993 -0.8620 16 6 4.1053 -1.4266 0.0308 17 6 3.5708 -0.6950 1.2660 18 6 2.0407 -0.7230 1.2484 19 1 1.6581 -0.2242 2.1388 20 7 1.5783 -2.1131 1.2308 21 6 1.4467 -2.8058 2.4046 22 1 1.6842 -2.3275 3.3434 23 6 1.0091 -4.1229 2.3880 24 7 0.7201 -4.7060 1.2439 25 14 0.8303 -5.0681 3.9893 26 1 2.1078 -5.7575 4.3024 27 1 0.4950 -4.1249 5.0861 28 1 -0.2540 -6.0735 3.8522 29 1 -0.3634 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3633 -1.0276 -0.0015 32 1 1.7637 -0.1578 -2.1389 33 1 1.6052 -1.7216 -1.2980 34 1 6.3011 0.1464 -4.0548 35 1 8.0883 -0.5947 1.2746 36 1 10.3614 -0.0858 -0.8255 37 1 10.5562 -0.0722 1.0086 38 1 9.7735 -2.4836 1.1096 39 1 9.5786 -2.4971 -0.7246 40 1 5.1896 -1.3245 -0.0138 41 1 3.8397 -2.4823 0.0879 42 1 3.9159 0.3388 1.2541 43 1 3.9334 -1.1897 2.1671 44 1 1.3652 -2.5427 0.3876 45 1 0.4147 -5.6265 1.2322 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036318835.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:48 Heat of formation + Delta-G solvation = 63.369055 kcal Electronic energy + Delta-G solvation = -27307.982360 eV Core-core repulsion = 23647.029385 eV Total energy + Delta-G solvation = -3660.952975 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.81293 -39.13260 -37.72799 -37.17158 -34.15683 -32.72266 -31.27475 -30.68967 -29.04673 -27.22997 -25.61306 -25.03439 -23.47896 -22.92091 -22.82411 -21.52334 -20.79543 -19.52260 -18.64331 -17.85084 -17.26689 -16.66074 -16.08898 -15.61239 -15.40040 -14.87041 -14.54090 -14.37075 -14.13137 -13.95847 -13.83032 -13.38628 -13.18324 -12.81520 -12.62626 -12.45066 -12.31995 -12.00591 -11.85292 -11.50455 -11.31718 -11.21156 -11.09962 -10.95428 -10.87082 -10.68304 -10.59461 -10.39708 -10.14546 -9.93675 -9.79404 -9.75643 -9.48366 -9.08409 -8.99471 -8.68801 -8.07462 -6.89364 -5.73057 -3.00627 0.34841 0.99169 1.40335 1.85377 3.24522 3.39416 3.44608 3.50229 3.51654 3.54812 3.68114 4.36453 4.51720 4.56474 4.62394 4.85460 4.97756 5.16200 5.20490 5.30933 5.41774 5.44573 5.50649 5.55147 5.63934 5.69726 5.73263 5.77791 5.95716 6.03653 6.10347 6.18445 6.25969 6.36104 6.53384 6.59662 6.67634 6.79544 6.88424 6.93109 7.05443 7.18443 7.32868 7.73876 7.83100 8.38709 8.45659 9.56946 10.15270 10.50532 11.49640 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012030 B = 0.003709 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.968927 B = 7546.383673 C = 9124.118782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 H 0.064 0.936 4 C 0.118 3.882 5 N -0.577 5.577 6 C 0.585 3.415 7 O -0.551 6.551 8 C 0.026 3.974 9 C -0.231 4.231 10 S 0.200 5.800 11 C 0.056 3.944 12 C -0.087 4.087 13 C -0.169 4.169 14 C -0.158 4.158 15 N -0.424 5.424 16 C 0.065 3.935 17 C -0.140 4.140 18 C 0.176 3.824 19 H 0.048 0.952 20 N -0.718 5.718 21 C -0.233 4.233 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.903 3.097 26 H -0.291 1.291 27 H -0.283 1.283 28 H -0.293 1.293 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.189 0.811 35 H 0.138 0.862 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.145 0.855 41 H 0.072 0.928 42 H 0.044 0.956 43 H 0.069 0.931 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.895 10.699 -5.762 22.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.127 4.127 3 H 0.082 0.918 4 C -0.004 4.004 5 N -0.306 5.306 6 C 0.370 3.630 7 O -0.431 6.431 8 C -0.108 4.108 9 C -0.373 4.373 10 S 0.458 5.542 11 C -0.222 4.222 12 C -0.108 4.108 13 C -0.207 4.207 14 C -0.197 4.197 15 N -0.139 5.139 16 C -0.057 4.057 17 C -0.181 4.181 18 C 0.066 3.934 19 H 0.066 0.934 20 N -0.360 5.360 21 C -0.365 4.365 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.582 5.582 25 Si 0.735 3.265 26 H -0.219 1.219 27 H -0.209 1.209 28 H -0.219 1.219 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.206 0.794 35 H 0.155 0.845 36 H 0.116 0.884 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.118 0.882 40 H 0.160 0.840 41 H 0.090 0.910 42 H 0.062 0.938 43 H 0.088 0.912 44 H 0.218 0.782 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 19.256 10.858 -6.084 22.928 hybrid contribution -1.373 -0.868 0.658 1.753 sum 17.882 9.990 -5.426 21.190 Atomic orbital electron populations 1.21665 0.94246 1.03174 1.00354 1.21693 0.96397 0.98767 0.95866 0.91766 1.21713 0.78537 1.01674 0.98524 1.47957 1.06767 1.57551 1.18292 1.17104 0.83888 0.78323 0.83687 1.90765 1.73920 1.50685 1.27701 1.20542 0.96371 1.05872 0.88009 1.26555 0.96853 1.07927 1.05959 1.82639 1.06038 1.61790 1.03690 1.26543 0.93501 1.03480 0.98663 1.20449 0.88871 1.06001 0.95527 1.23168 0.94376 0.99132 1.04064 1.23184 1.00636 0.91234 1.04636 1.66697 1.06264 1.16011 1.24924 1.23077 1.02849 0.97412 0.82380 1.22389 0.99436 0.98500 0.97761 1.20264 0.91400 0.87213 0.94520 0.93419 1.42461 1.78972 1.07769 1.06843 1.19225 1.36756 0.93886 0.86593 0.91322 1.24685 1.02519 0.97163 0.96520 1.69653 1.52018 1.12928 1.23615 0.86245 0.77223 0.79843 0.83201 1.21903 1.20890 1.21942 0.92820 0.93831 0.91025 0.89967 0.90510 0.79356 0.84472 0.88397 0.87128 0.87189 0.88155 0.83966 0.90995 0.93757 0.91212 0.78171 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.05 37.16 0.34 -1.99 16 2 C -0.11 -1.90 2.67 -90.50 -0.24 -2.15 16 3 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.12 2.18 5.40 -3.71 -0.02 2.16 16 5 N -0.58 -10.68 2.97 -174.09 -0.52 -11.19 16 6 C 0.59 10.68 7.65 -12.59 -0.10 10.59 16 7 O -0.55 -11.05 16.18 5.25 0.09 -10.97 16 8 C 0.03 0.40 6.51 -84.52 -0.55 -0.15 16 9 C -0.23 -2.81 10.62 29.65 0.31 -2.50 16 10 S 0.20 1.76 21.65 -107.50 -2.33 -0.56 16 11 C 0.06 0.61 6.99 -13.61 -0.10 0.52 16 12 C -0.09 -0.73 6.33 -91.77 -0.58 -1.31 16 13 C -0.17 -0.96 10.01 -26.69 -0.27 -1.23 16 14 C -0.16 -1.05 10.24 -26.68 -0.27 -1.32 16 15 N -0.42 -6.04 6.74 -8.51 -0.06 -6.10 16 16 C 0.07 1.21 6.01 -3.71 -0.02 1.19 16 17 C -0.14 -2.59 5.78 -26.61 -0.15 -2.74 16 18 C 0.18 3.53 2.53 -67.88 -0.17 3.36 16 19 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 20 N -0.72 -17.36 3.64 -53.38 -0.19 -17.55 16 21 C -0.23 -6.30 9.93 -15.06 -0.15 -6.45 16 22 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -27.84 13.06 55.49 0.72 -27.11 16 25 Si 0.90 22.25 29.55 -169.99 -5.02 17.23 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.40 7.54 -51.93 -0.39 1.01 16 32 H 0.08 1.49 7.05 -51.93 -0.37 1.13 16 33 H 0.08 1.56 6.64 -51.93 -0.34 1.22 16 34 H 0.19 2.07 8.04 -52.49 -0.42 1.65 16 35 H 0.14 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.10 0.49 7.21 -51.93 -0.37 0.12 16 37 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.14 2.47 3.57 -89.50 -0.32 2.15 16 41 H 0.07 1.57 7.74 -51.93 -0.40 1.16 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.38 9.94 5.93 -40.82 -0.24 9.70 16 45 H 0.25 7.40 8.31 -40.82 -0.34 7.07 16 LS Contribution 371.56 15.07 5.60 5.60 Total: -1.00 -31.84 371.56 -10.41 -42.25 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -6.63 Total: 10.89 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -2.07 Total: -2.48 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: -0.04 Total: -61.96 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.33 Total: -0.56 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.84 -10.41 -42.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036318835.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.623 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds