Wall clock time and date at job start Tue Mar 31 2020 19:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.52078 * 2 1 4 4 C 1.53191 * 109.49811 * 239.92024 * 2 1 3 5 5 N 1.46928 * 108.77363 * 185.41105 * 4 2 1 6 6 C 1.34770 * 120.62974 * 233.62646 * 5 4 2 7 7 O 1.21626 * 120.00478 * 353.16405 * 6 5 4 8 8 C 1.47277 * 119.99847 * 173.15914 * 6 5 4 9 9 C 1.35203 * 123.13901 * 171.81032 * 8 6 5 10 10 S 1.70944 * 108.82352 * 179.97438 * 9 8 6 11 11 C 1.70769 * 91.13229 * 359.97438 * 10 9 8 12 12 C 1.50694 * 124.72365 * 180.02562 * 11 10 9 13 13 C 1.53001 * 117.49708 * 8.71896 * 12 11 10 14 14 C 1.53011 * 117.49675 * 300.05966 * 12 11 10 15 15 N 1.28657 * 110.55588 * 359.76659 * 11 10 9 16 16 C 1.46923 * 118.73748 * 53.61159 * 5 4 2 17 17 C 1.53192 * 108.77820 * 306.38847 * 16 5 4 18 18 C 1.53037 * 109.49690 * 120.07764 * 2 1 3 19 19 H 1.09001 * 109.45364 * 301.33209 * 18 2 1 20 20 N 1.46509 * 109.45677 * 61.30159 * 18 2 1 21 21 C 1.36936 * 119.99834 * 205.06926 * 20 18 2 22 22 H 1.07997 * 120.00120 * 359.97438 * 21 20 18 23 23 C 1.38805 * 120.00072 * 180.02562 * 21 20 18 24 24 N 1.31622 * 120.00104 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00203 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46994 * 269.99399 * 25 23 21 27 27 H 1.48495 * 109.47194 * 29.99264 * 25 23 21 28 28 H 1.48506 * 109.47087 * 149.99675 * 25 23 21 29 29 H 1.09004 * 109.47491 * 299.91940 * 1 2 3 30 30 H 1.09006 * 109.46948 * 59.91731 * 1 2 3 31 31 H 1.08997 * 109.47175 * 179.91468 * 1 2 3 32 32 H 1.09005 * 109.58575 * 65.62686 * 4 2 1 33 33 H 1.09000 * 109.58421 * 305.20157 * 4 2 1 34 34 H 1.07997 * 125.59191 * 359.97438 * 9 8 6 35 35 H 1.09000 * 115.55252 * 154.39239 * 12 11 10 36 36 H 1.08999 * 117.50181 * 359.97438 * 13 12 11 37 37 H 1.08997 * 117.49610 * 145.02363 * 13 12 11 38 38 H 1.09000 * 117.49954 * 214.97930 * 14 12 11 39 39 H 1.09007 * 117.49575 * 0.02562 * 14 12 11 40 40 H 1.09001 * 109.58707 * 186.59891 * 16 5 4 41 41 H 1.09006 * 109.70441 * 66.24449 * 16 5 4 42 42 H 1.08996 * 109.49326 * 294.68637 * 17 16 5 43 43 H 1.09000 * 109.50185 * 174.58926 * 17 16 5 44 44 H 0.97001 * 120.00013 * 25.06132 * 20 18 2 45 45 H 0.96996 * 120.00290 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5046 -0.8290 -1.1696 6 6 4.2811 -0.3855 -2.1779 7 8 3.7727 -0.0077 -3.2162 8 6 5.7454 -0.3583 -2.0225 9 6 6.5916 -0.0806 -3.0397 10 16 8.1968 -0.1478 -2.4559 11 6 7.6460 -0.5417 -0.8882 12 6 8.5404 -0.7822 0.3006 13 6 10.0289 -0.4668 0.1401 14 6 9.5567 -1.9217 0.2010 15 7 6.3610 -0.5993 -0.8620 16 6 4.1053 -1.4266 0.0308 17 6 3.5708 -0.6950 1.2660 18 6 2.0407 -0.7230 1.2484 19 1 1.6581 -0.2242 2.1388 20 7 1.5783 -2.1131 1.2308 21 6 1.4467 -2.8058 2.4046 22 1 1.6842 -2.3275 3.3434 23 6 1.0091 -4.1229 2.3880 24 7 0.7201 -4.7060 1.2439 25 14 0.8303 -5.0681 3.9893 26 1 2.1078 -5.7575 4.3024 27 1 0.4950 -4.1249 5.0861 28 1 -0.2540 -6.0735 3.8522 29 1 -0.3634 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3633 -1.0276 -0.0015 32 1 1.7637 -0.1578 -2.1389 33 1 1.6052 -1.7216 -1.2980 34 1 6.3011 0.1464 -4.0548 35 1 8.0883 -0.5947 1.2746 36 1 10.3614 -0.0858 -0.8255 37 1 10.5562 -0.0722 1.0086 38 1 9.7735 -2.4836 1.1096 39 1 9.5786 -2.4971 -0.7246 40 1 5.1896 -1.3245 -0.0138 41 1 3.8397 -2.4823 0.0879 42 1 3.9159 0.3388 1.2541 43 1 3.9334 -1.1897 2.1671 44 1 1.3652 -2.5427 0.3876 45 1 0.4147 -5.6265 1.2322 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036318835.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:48 Heat of formation + Delta-G solvation = 44.734233 kcal Electronic energy + Delta-G solvation = -27308.790427 eV Core-core repulsion = 23647.029385 eV Total energy + Delta-G solvation = -3661.761041 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.99731 -40.36580 -39.08003 -37.94544 -35.88128 -34.44747 -32.99424 -31.65302 -30.90390 -28.48163 -26.88048 -26.44090 -25.37217 -24.02279 -23.29598 -23.06184 -21.64289 -20.74325 -19.94268 -19.27101 -19.17539 -17.61022 -17.25550 -16.81741 -16.79489 -16.35764 -15.96105 -15.68350 -15.42568 -15.34379 -15.03793 -14.85576 -14.59279 -14.32914 -14.12581 -13.68911 -13.33499 -13.16391 -13.00196 -12.87111 -12.80799 -12.67584 -12.43844 -12.38115 -12.11556 -12.07946 -11.95684 -11.86172 -11.60200 -11.48410 -11.28000 -11.18320 -10.94354 -10.63167 -10.04654 -9.90750 -9.53453 -8.92067 -7.88823 -5.15451 -0.56750 0.17605 0.50724 0.76605 1.48176 1.49028 1.57310 2.00578 2.16235 2.59319 2.70157 2.99190 3.44323 3.52024 3.77304 3.84006 3.86194 3.99776 4.05065 4.09686 4.10353 4.14237 4.39020 4.39937 4.44428 4.49140 4.62649 4.63945 4.76096 4.78150 4.87749 5.01688 5.03732 5.10091 5.11064 5.16919 5.22923 5.23605 5.29432 5.46128 5.48553 5.58714 5.73877 6.27910 6.32476 6.47585 6.99379 7.39409 8.15519 8.40127 9.34783 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012030 B = 0.003709 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.968927 B = 7546.383673 C = 9124.118782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.097 4.097 3 H 0.084 0.916 4 C 0.122 3.878 5 N -0.582 5.582 6 C 0.581 3.419 7 O -0.577 6.577 8 C -0.008 4.008 9 C -0.239 4.239 10 S 0.309 5.691 11 C 0.043 3.957 12 C -0.114 4.114 13 C -0.146 4.146 14 C -0.158 4.158 15 N -0.459 5.459 16 C 0.075 3.925 17 C -0.129 4.129 18 C 0.171 3.829 19 H 0.047 0.953 20 N -0.724 5.724 21 C -0.228 4.228 22 H 0.075 0.925 23 C -0.074 4.074 24 N -0.971 5.971 25 Si 0.967 3.033 26 H -0.290 1.290 27 H -0.270 1.270 28 H -0.300 1.300 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.039 0.961 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.197 0.803 35 H 0.131 0.869 36 H 0.109 0.891 37 H 0.129 0.871 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.164 0.836 41 H 0.030 0.970 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.372 0.628 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.895 12.395 -5.415 25.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.117 4.117 3 H 0.102 0.898 4 C -0.001 4.001 5 N -0.311 5.311 6 C 0.368 3.632 7 O -0.459 6.459 8 C -0.142 4.142 9 C -0.382 4.382 10 S 0.568 5.432 11 C -0.234 4.234 12 C -0.136 4.136 13 C -0.184 4.184 14 C -0.197 4.197 15 N -0.175 5.175 16 C -0.048 4.048 17 C -0.170 4.170 18 C 0.062 3.938 19 H 0.065 0.935 20 N -0.365 5.365 21 C -0.360 4.360 22 H 0.093 0.907 23 C -0.266 4.266 24 N -0.622 5.622 25 Si 0.797 3.203 26 H -0.217 1.217 27 H -0.195 1.195 28 H -0.228 1.228 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.214 0.786 35 H 0.149 0.851 36 H 0.127 0.873 37 H 0.147 0.853 38 H 0.136 0.864 39 H 0.119 0.881 40 H 0.180 0.820 41 H 0.049 0.951 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.205 0.795 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 22.297 12.603 -5.712 26.241 hybrid contribution -2.123 -1.307 0.470 2.537 sum 20.173 11.296 -5.242 23.707 Atomic orbital electron populations 1.21592 0.93608 1.01573 1.01953 1.21617 0.96857 0.99094 0.94127 0.89819 1.21592 0.79090 1.00285 0.99141 1.47988 1.06650 1.57937 1.18554 1.17572 0.85421 0.77298 0.82867 1.90726 1.74936 1.51814 1.28404 1.20160 0.94931 1.09419 0.89677 1.26880 0.99100 1.06240 1.05945 1.82226 1.01978 1.58812 1.00195 1.26964 0.93018 1.02372 1.01010 1.20572 0.89951 1.08585 0.94460 1.23319 0.91650 0.98004 1.05421 1.23300 0.99412 0.91771 1.05175 1.66379 1.08071 1.17950 1.25073 1.23025 1.04265 0.94910 0.82559 1.22244 0.97976 0.99501 0.97280 1.20474 0.92387 0.85259 0.95666 0.93476 1.42566 1.79052 1.09258 1.05585 1.19592 1.34748 0.94052 0.87605 0.90735 1.25422 1.03529 0.98324 0.99352 1.69824 1.53968 1.12787 1.25661 0.85230 0.76669 0.78391 0.80023 1.21747 1.19508 1.22751 0.91965 0.91463 0.94134 0.89576 0.93231 0.78592 0.85138 0.87294 0.85295 0.86353 0.88074 0.82048 0.95134 0.91726 0.92143 0.79495 0.94405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 9.05 71.98 0.65 -3.74 16 2 C -0.10 -3.45 2.67 -10.72 -0.03 -3.48 16 3 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 4 C 0.12 4.67 5.40 86.36 0.47 5.14 16 5 N -0.58 -22.25 2.97 -822.94 -2.45 -24.69 16 6 C 0.58 21.63 7.65 86.62 0.66 22.29 16 7 O -0.58 -23.57 16.18 -4.11 -0.07 -23.63 16 8 C -0.01 -0.24 6.51 40.56 0.26 0.02 16 9 C -0.24 -5.43 10.62 67.12 0.71 -4.72 16 10 S 0.31 4.43 21.65 -56.49 -1.22 3.21 16 11 C 0.04 0.87 6.99 88.57 0.62 1.49 16 12 C -0.11 -1.68 6.33 -11.54 -0.07 -1.75 16 13 C -0.15 -1.12 10.01 30.62 0.31 -0.81 16 14 C -0.16 -1.67 10.24 30.63 0.31 -1.35 16 15 N -0.46 -12.80 6.74 -180.83 -1.22 -14.02 16 16 C 0.07 2.88 6.01 86.36 0.52 3.40 16 17 C -0.13 -4.81 5.78 30.67 0.18 -4.64 16 18 C 0.17 6.91 2.53 45.02 0.11 7.03 16 19 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 20 N -0.72 -36.18 3.64 -322.80 -1.18 -37.35 16 21 C -0.23 -12.53 9.93 84.03 0.83 -11.70 16 22 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 23 C -0.07 -4.27 5.50 84.86 0.47 -3.81 16 24 N -0.97 -60.06 13.06 21.65 0.28 -59.78 16 25 Si 0.97 46.56 29.55 68.60 2.03 48.58 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 27 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 28 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 29 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.04 1.62 7.54 -2.39 -0.02 1.61 16 32 H 0.09 3.21 7.05 -2.38 -0.02 3.20 16 33 H 0.05 2.16 6.64 -2.39 -0.02 2.14 16 34 H 0.20 4.01 8.04 -2.91 -0.02 3.99 16 35 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.11 0.59 7.21 -2.39 -0.02 0.57 16 37 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.16 5.74 3.57 -76.56 -0.27 5.46 16 41 H 0.03 1.41 7.74 -2.38 -0.02 1.39 16 42 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.37 20.34 5.93 -92.71 -0.55 19.79 16 45 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -71.50 371.56 2.39 -69.11 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: 0.20 Total: 35.21 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 6.01 Total: 3.37 kcal Atomic # 7 Polarization: -131.28 SS G_CDS: -4.56 Total: -135.84 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.07 Total: -23.63 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Atomic # 16 Polarization: 4.43 SS G_CDS: -1.22 Total: 3.21 kcal Total: -71.50 2.39 -69.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036318835.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.845 kcal (2) G-P(sol) polarization free energy of solvation -71.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds