Wall clock time and date at job start Tue Mar 31 2020 19:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.70308 * 2 1 4 4 C 1.53188 * 109.58615 * 239.64125 * 2 1 3 5 5 C 1.53045 * 109.31458 * 185.58070 * 4 2 1 6 6 H 1.09004 * 109.45128 * 301.35784 * 5 4 2 7 7 N 1.46499 * 109.46048 * 181.38798 * 5 4 2 8 8 C 1.36937 * 119.99924 * 154.97141 * 7 5 4 9 9 H 1.08001 * 119.99812 * 359.97438 * 8 7 5 10 10 C 1.38807 * 119.99803 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99995 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 120.00421 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47106 * 89.99351 * 12 10 8 14 14 H 1.48503 * 109.46864 * 330.00053 * 12 10 8 15 15 H 1.48494 * 109.47555 * 209.99898 * 12 10 8 16 16 C 1.53039 * 109.52542 * 61.36907 * 5 4 2 17 17 C 1.53194 * 109.31341 * 298.61525 * 16 5 4 18 18 N 1.46927 * 108.76484 * 54.66025 * 17 16 5 19 19 C 1.34771 * 120.63084 * 126.35616 * 18 17 16 20 20 O 1.21624 * 120.00043 * 186.52222 * 19 18 17 21 21 C 1.47253 * 120.00319 * 6.52603 * 19 18 17 22 22 N 1.29761 * 125.52214 * 7.58527 * 21 19 18 23 23 C 1.32596 * 116.75574 * 179.83064 * 22 21 19 24 24 C 1.34628 * 114.30671 * 0.42792 * 23 22 21 25 25 S 1.71630 * 109.59950 * 359.80130 * 24 23 22 26 26 C 1.51947 * 110.68766 * 179.81567 * 24 23 22 27 27 C 1.54231 * 104.84467 * 17.40627 * 26 24 23 28 28 C 1.52795 * 136.15905 * 180.02562 * 23 22 21 29 29 H 1.09002 * 109.47641 * 183.10799 * 1 2 3 30 30 H 1.08997 * 109.47341 * 303.10760 * 1 2 3 31 31 H 1.09003 * 109.47554 * 63.10861 * 1 2 3 32 32 H 1.09000 * 109.49734 * 65.62628 * 4 2 1 33 33 H 1.09006 * 109.50032 * 305.52987 * 4 2 1 34 34 H 0.97003 * 119.99813 * 334.96731 * 7 5 4 35 35 H 0.97003 * 119.99913 * 180.02562 * 11 10 8 36 36 H 1.09000 * 109.49560 * 58.58344 * 16 5 4 37 37 H 1.09002 * 109.49397 * 178.67942 * 16 5 4 38 38 H 1.08994 * 109.59911 * 294.87218 * 17 16 5 39 39 H 1.09006 * 109.69789 * 174.50767 * 17 16 5 40 40 H 1.09000 * 110.36069 * 136.24905 * 26 24 23 41 41 H 1.09003 * 110.36224 * 258.56460 * 26 24 23 42 42 H 1.08993 * 110.95144 * 91.61198 * 27 26 24 43 43 H 1.09001 * 110.95221 * 215.33717 * 27 26 24 44 44 H 1.09000 * 110.31778 * 43.87376 * 28 23 22 45 45 H 1.08997 * 110.39844 * 281.73047 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7294 -1.2453 5 6 3.5675 -0.8481 -1.1701 6 1 4.0060 0.1473 -1.0991 7 7 4.0651 -1.5159 -2.3753 8 6 5.3495 -1.2985 -2.7977 9 1 5.9954 -0.6344 -2.2425 10 6 5.8211 -1.9316 -3.9393 11 7 7.0555 -1.7223 -4.3456 12 14 4.7038 -3.0797 -4.9000 13 1 3.9696 -2.3060 -5.9332 14 1 3.7321 -3.7145 -3.9736 15 1 5.5211 -4.1312 -5.5567 16 6 3.9565 -1.6659 0.0636 17 6 3.4650 -0.9469 1.3238 18 7 2.0225 -0.6995 1.1946 19 6 1.1673 -1.1069 2.1533 20 8 -0.0323 -1.0035 1.9820 21 6 1.6854 -1.6771 3.4082 22 7 2.9332 -1.7104 3.7626 23 6 3.2058 -2.2643 4.9361 24 6 2.1266 -2.7270 5.5946 25 16 0.7143 -2.4299 4.6658 26 6 2.5322 -3.3464 6.9215 27 6 3.9520 -2.8079 7.1914 28 6 4.4624 -2.5317 5.7632 29 1 -0.3634 -1.0261 0.0557 30 1 -0.3634 0.5613 0.8608 31 1 -0.3634 0.4648 -0.9165 32 1 1.7660 -0.1669 -2.1368 33 1 1.6029 -1.7254 -1.2912 34 1 3.4849 -2.1121 -2.8741 35 1 7.3849 -2.1645 -5.1437 36 1 3.4977 -2.6529 0.0052 37 1 5.0408 -1.7700 0.1039 38 1 3.9902 0.0021 1.4317 39 1 3.6520 -1.5696 2.1987 40 1 1.8504 -3.0312 7.7113 41 1 2.5473 -4.4336 6.8437 42 1 3.9156 -1.8895 7.7773 43 1 4.5667 -3.5600 7.6859 44 1 5.1132 -1.6573 5.7564 45 1 4.9939 -3.4012 5.3764 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044682902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:27 Heat of formation + Delta-G solvation = 55.229715 kcal Electronic energy + Delta-G solvation = -26939.934573 eV Core-core repulsion = 23278.628650 eV Total energy + Delta-G solvation = -3661.305923 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.99612 -40.06831 -37.49580 -36.38328 -34.63302 -32.65415 -31.94332 -29.88393 -29.05004 -28.66441 -27.18196 -25.38284 -24.16364 -22.74216 -22.45110 -21.43876 -20.44536 -19.86400 -18.81476 -18.27627 -17.53646 -16.52792 -16.25153 -15.90602 -15.45819 -14.92596 -14.54110 -14.28306 -14.16908 -13.97198 -13.74599 -13.48203 -13.29839 -13.19934 -12.91863 -12.53141 -12.45314 -12.33134 -12.15166 -11.85052 -11.66784 -11.62194 -11.42848 -11.35507 -10.99094 -10.95213 -10.79242 -10.61446 -10.27536 -9.95324 -9.75554 -9.60477 -9.58285 -9.18056 -8.87469 -8.85020 -8.45574 -7.25860 -5.76726 -3.12070 0.05365 0.77953 1.48246 2.03774 2.93590 3.03850 3.38242 3.41725 3.45848 3.49963 4.04542 4.26439 4.52384 4.58372 4.59707 4.96616 4.99239 5.06797 5.10612 5.21427 5.28135 5.30743 5.35620 5.43214 5.51102 5.53598 5.59575 5.63988 5.69572 5.73642 5.83173 5.93957 6.03040 6.06695 6.29567 6.34515 6.37408 6.41248 6.51630 6.70551 6.87256 7.00815 7.20422 7.41790 7.99547 8.03731 8.42536 9.20980 9.93857 10.14028 11.41637 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014718 B = 0.003147 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.963695 B = 8893.990714 C =10150.700946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.146 3.854 3 H 0.078 0.922 4 C -0.138 4.138 5 C 0.182 3.818 6 H 0.057 0.943 7 N -0.748 5.748 8 C -0.242 4.242 9 H 0.091 0.909 10 C 0.004 3.996 11 N -0.935 5.935 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.278 1.278 15 H -0.292 1.292 16 C -0.148 4.148 17 C 0.075 3.925 18 N -0.572 5.572 19 C 0.594 3.406 20 O -0.529 6.529 21 C 0.001 3.999 22 N -0.410 5.410 23 C 0.034 3.966 24 C -0.273 4.273 25 S 0.251 5.749 26 C -0.037 4.037 27 C -0.116 4.116 28 C -0.042 4.042 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.360 0.640 35 H 0.259 0.741 36 H 0.054 0.946 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.133 0.867 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.617 -1.294 25.071 27.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.043 3.957 3 H 0.096 0.904 4 C -0.177 4.177 5 C 0.072 3.928 6 H 0.075 0.925 7 N -0.390 5.390 8 C -0.372 4.372 9 H 0.108 0.892 10 C -0.191 4.191 11 N -0.582 5.582 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.204 1.204 15 H -0.218 1.218 16 C -0.189 4.189 17 C -0.047 4.047 18 N -0.304 5.304 19 C 0.378 3.622 20 O -0.407 6.407 21 C -0.275 4.275 22 N -0.128 5.128 23 C -0.101 4.101 24 C -0.395 4.395 25 S 0.509 5.491 26 C -0.077 4.077 27 C -0.155 4.155 28 C -0.082 4.082 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.193 0.807 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.149 0.851 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.749 -1.099 24.624 27.751 hybrid contribution 0.436 -0.965 -0.648 1.242 sum -12.313 -2.064 23.976 27.032 Atomic orbital electron populations 1.22236 0.92677 1.03775 1.00782 1.21423 0.95562 0.95275 0.83396 0.90418 1.22343 0.97682 1.00969 0.96733 1.20189 0.90658 0.95474 0.86477 0.92525 1.42798 1.13166 1.54853 1.28208 1.19075 0.87705 1.23143 1.07228 0.89167 1.24663 0.96106 1.00130 0.98250 1.69702 1.15115 1.47266 1.26155 0.86560 0.80355 0.81297 0.80377 1.21086 1.20387 1.21799 1.22614 1.02067 0.99534 0.94707 1.22859 0.77695 1.02206 1.01972 1.48026 1.08527 1.54987 1.18856 1.16818 0.85754 0.78458 0.81177 1.90902 1.14403 1.56564 1.78871 1.27633 0.91011 1.07346 1.01533 1.66000 1.16919 1.15897 1.13951 1.21895 0.97718 1.00030 0.90496 1.26943 0.98335 1.08562 1.05688 1.83801 1.06115 1.49976 1.09248 1.20717 0.96877 0.99954 0.90131 1.22344 0.94988 1.02067 0.96139 1.20927 0.92409 1.03061 0.91809 0.90985 0.91255 0.93482 0.90340 0.91818 0.80698 0.93091 0.92688 0.90212 0.91574 0.85058 0.90147 0.89387 0.90293 0.89355 0.89662 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 7.59 37.16 0.28 -1.60 16 2 C 0.15 2.11 3.49 -67.60 -0.24 1.88 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.14 -2.23 4.84 -26.61 -0.13 -2.36 16 5 C 0.18 3.47 2.73 -67.89 -0.19 3.28 16 6 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 7 N -0.75 -17.66 4.92 -53.38 -0.26 -17.93 16 8 C -0.24 -6.76 10.41 -15.06 -0.16 -6.92 16 9 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 10 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 11 N -0.93 -29.34 13.97 55.49 0.78 -28.57 16 12 Si 0.88 22.29 27.74 -169.99 -4.71 17.57 16 13 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 15 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 16 C -0.15 -2.62 5.66 -26.61 -0.15 -2.77 16 17 C 0.08 1.13 6.09 -3.71 -0.02 1.11 16 18 N -0.57 -8.54 2.97 -166.54 -0.49 -9.04 16 19 C 0.59 8.93 7.59 -12.60 -0.10 8.84 16 20 O -0.53 -8.49 12.35 5.26 0.06 -8.42 16 21 C 0.00 0.01 7.17 -14.76 -0.11 -0.09 16 22 N -0.41 -5.41 6.98 -6.78 -0.05 -5.46 16 23 C 0.03 0.37 7.62 -82.49 -0.63 -0.26 16 24 C -0.27 -2.59 7.17 -34.97 -0.25 -2.84 16 25 S 0.25 2.65 23.04 -107.50 -2.48 0.18 16 26 C -0.04 -0.22 6.80 -26.62 -0.18 -0.40 16 27 C -0.12 -0.58 7.11 -25.48 -0.18 -0.76 16 28 C -0.04 -0.32 6.81 -26.23 -0.18 -0.50 16 29 H 0.07 1.09 6.75 -51.93 -0.35 0.74 16 30 H 0.07 0.98 6.75 -51.93 -0.35 0.63 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.36 8.47 5.66 -40.82 -0.23 8.24 16 35 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.13 1.95 4.14 -63.88 -0.26 1.68 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 362.88 15.07 5.47 5.47 Total: -1.00 -32.64 362.88 -10.71 -43.35 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.70 Total: 6.22 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -2.32 Total: -3.38 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: -0.03 Total: -60.99 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.06 Total: -8.42 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.57 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.48 Total: 0.18 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.64 -10.71 -43.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044682902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.577 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds