Wall clock time and date at job start Tue Mar 31 2020 19:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.70469 * 2 1 4 4 C 1.52763 * 109.51155 * 239.87963 * 2 1 3 5 5 C 1.53044 * 109.38308 * 185.70951 * 4 2 1 6 6 H 1.08997 * 109.45937 * 181.26364 * 5 4 2 7 7 N 1.46498 * 109.45716 * 301.21878 * 5 4 2 8 8 C 1.36941 * 120.00032 * 205.06639 * 7 5 4 9 9 H 1.08005 * 119.99565 * 0.02562 * 8 7 5 10 10 C 1.38814 * 120.00236 * 180.02562 * 8 7 5 11 11 N 1.31614 * 119.99679 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99814 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47276 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46828 * 120.00414 * 12 10 8 15 15 H 1.48498 * 109.46892 * 240.00139 * 12 10 8 16 16 C 1.53035 * 109.53965 * 61.23910 * 5 4 2 17 17 C 1.53192 * 109.31389 * 298.63698 * 16 5 4 18 18 N 1.46923 * 108.77439 * 54.63437 * 17 16 5 19 19 C 1.34783 * 120.62810 * 126.37478 * 18 17 16 20 20 O 1.21621 * 119.99721 * 173.96426 * 19 18 17 21 21 C 1.47249 * 120.00087 * 354.22835 * 19 18 17 22 22 N 1.29766 * 125.52806 * 5.55939 * 21 19 18 23 23 C 1.32590 * 116.75561 * 179.76850 * 22 21 19 24 24 C 1.34626 * 114.31114 * 0.54101 * 23 22 21 25 25 S 1.71620 * 109.59842 * 359.68962 * 24 23 22 26 26 C 1.51938 * 110.68747 * 179.64393 * 24 23 22 27 27 C 1.54224 * 104.85172 * 342.61761 * 26 24 23 28 28 C 1.52801 * 136.15598 * 180.19349 * 23 22 21 29 29 H 1.09000 * 109.46962 * 305.93820 * 1 2 3 30 30 H 1.09000 * 109.46911 * 65.93535 * 1 2 3 31 31 H 1.08999 * 109.47216 * 185.93203 * 1 2 3 32 32 H 1.08999 * 109.56288 * 65.67362 * 4 2 1 33 33 H 1.08999 * 109.38652 * 305.63529 * 4 2 1 34 34 H 0.97002 * 120.00721 * 25.07240 * 7 5 4 35 35 H 0.97002 * 120.00019 * 180.02562 * 11 10 8 36 36 H 1.08994 * 109.49667 * 178.68085 * 16 5 4 37 37 H 1.09000 * 109.49549 * 58.58929 * 16 5 4 38 38 H 1.08997 * 109.58588 * 294.84186 * 17 16 5 39 39 H 1.09008 * 109.58667 * 174.42390 * 17 16 5 40 40 H 1.09001 * 110.36766 * 101.44653 * 26 24 23 41 41 H 1.09003 * 110.36683 * 223.76099 * 26 24 23 42 42 H 1.09006 * 110.94549 * 268.37185 * 27 26 24 43 43 H 1.09007 * 110.98993 * 144.67227 * 27 26 24 44 44 H 1.09001 * 110.31667 * 316.81931 * 28 23 22 45 45 H 1.08998 * 110.31082 * 78.90320 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0402 -0.7226 -1.2455 5 6 3.5639 -0.8463 -1.1725 6 1 3.9314 -1.3417 -2.0711 7 7 4.1578 0.4893 -1.0743 8 6 5.4418 0.7007 -1.5007 9 1 6.0165 -0.1172 -1.9097 10 6 6.0048 1.9661 -1.4072 11 7 5.3046 2.9626 -0.9083 12 14 7.7561 2.2545 -1.9895 13 1 8.3222 0.9822 -2.5052 14 1 7.7567 3.2709 -3.0722 15 1 8.5815 2.7400 -0.8545 16 6 3.9523 -1.6687 0.0583 17 6 3.4644 -0.9519 1.3212 18 7 2.0225 -0.6996 1.1945 19 6 1.1673 -1.1069 2.1533 20 8 -0.0073 -0.7973 2.0919 21 6 1.6561 -1.9219 3.2780 22 7 2.8972 -2.2231 3.5076 23 6 3.1429 -2.9667 4.5775 24 6 2.0450 -3.3149 5.2745 25 16 0.6519 -2.6507 4.5239 26 6 2.4192 -4.1696 6.4737 27 6 3.8476 -4.6679 6.1737 28 6 4.3824 -3.5576 5.2479 29 1 -0.3633 0.6032 0.8321 30 1 -0.3633 0.4191 -0.9384 31 1 -0.3633 -1.0221 0.1062 32 1 1.7633 -0.1566 -2.1349 33 1 1.5964 -1.7169 -1.2942 34 1 3.6416 1.2240 -0.7073 35 1 5.6978 3.8470 -0.8433 36 1 5.0362 -1.7762 0.0967 37 1 3.4905 -2.6542 -0.0022 38 1 3.9928 -0.0050 1.4312 39 1 3.6503 -1.5798 2.1926 40 1 2.4102 -3.5705 7.3842 41 1 1.7349 -5.0129 6.5668 42 1 3.8251 -5.6281 5.6583 43 1 4.4387 -4.7319 7.0873 44 1 5.0527 -3.9796 4.4991 45 1 4.8985 -2.7938 5.8294 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044682903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:30 Heat of formation + Delta-G solvation = 55.377027 kcal Electronic energy + Delta-G solvation = -27411.180739 eV Core-core repulsion = 23749.881204 eV Total energy + Delta-G solvation = -3661.299535 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.86173 -39.90369 -37.41923 -36.28102 -34.13469 -32.43854 -31.85931 -29.16311 -28.94358 -28.51426 -27.00212 -25.26837 -23.89499 -23.32243 -22.49991 -21.42996 -20.43748 -19.30283 -18.34001 -18.02701 -17.17256 -16.41963 -16.03489 -15.79253 -15.22975 -14.70556 -14.50209 -14.13318 -13.85539 -13.78916 -13.69408 -13.44653 -13.21996 -13.11880 -12.89337 -12.54983 -12.32277 -11.99918 -11.94329 -11.58459 -11.52843 -11.36513 -11.28228 -11.12722 -10.91546 -10.76589 -10.65963 -10.49799 -10.20091 -9.92203 -9.60697 -9.59743 -9.40048 -8.99980 -8.74623 -8.67381 -8.10846 -6.92962 -5.74882 -3.03172 0.18310 0.89861 1.59692 2.18076 3.15300 3.24337 3.43936 3.49799 3.51879 3.66966 4.13677 4.40131 4.59967 4.60993 4.72438 5.05941 5.17463 5.28493 5.30969 5.35768 5.38882 5.48358 5.50324 5.59515 5.67595 5.68331 5.76198 5.78831 5.89284 5.91439 6.04940 6.09431 6.23122 6.34075 6.48887 6.55666 6.63410 6.74182 6.79838 6.86894 6.99215 7.17042 7.36603 7.72106 7.72810 8.27349 8.43688 9.54994 10.12562 10.47527 11.47840 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003599 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.051496 B = 7777.121949 C = 9256.445010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.143 3.857 3 H 0.085 0.915 4 C -0.132 4.132 5 C 0.171 3.829 6 H 0.049 0.951 7 N -0.722 5.722 8 C -0.236 4.236 9 H 0.070 0.930 10 C -0.013 4.013 11 N -0.932 5.932 12 Si 0.904 3.096 13 H -0.281 1.281 14 H -0.293 1.293 15 H -0.293 1.293 16 C -0.143 4.143 17 C 0.062 3.938 18 N -0.563 5.563 19 C 0.589 3.411 20 O -0.535 6.535 21 C 0.010 3.990 22 N -0.409 5.409 23 C 0.034 3.966 24 C -0.276 4.276 25 S 0.248 5.752 26 C -0.036 4.036 27 C -0.116 4.116 28 C -0.043 4.043 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.071 0.929 37 H 0.043 0.957 38 H 0.078 0.922 39 H 0.145 0.855 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.903 -16.121 14.540 23.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.041 3.959 3 H 0.103 0.897 4 C -0.171 4.171 5 C 0.061 3.939 6 H 0.067 0.933 7 N -0.364 5.364 8 C -0.367 4.367 9 H 0.088 0.912 10 C -0.209 4.209 11 N -0.581 5.581 12 Si 0.736 3.264 13 H -0.206 1.206 14 H -0.220 1.220 15 H -0.220 1.220 16 C -0.184 4.184 17 C -0.060 4.060 18 N -0.294 5.294 19 C 0.372 3.628 20 O -0.414 6.414 21 C -0.267 4.267 22 N -0.125 5.125 23 C -0.101 4.101 24 C -0.399 4.399 25 S 0.506 5.494 26 C -0.076 4.076 27 C -0.155 4.155 28 C -0.082 4.082 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.096 0.904 39 H 0.161 0.839 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.091 -15.733 14.208 23.065 hybrid contribution 1.961 0.364 -0.129 1.999 sum -7.129 -15.369 14.078 22.028 Atomic orbital electron populations 1.22222 0.93193 1.03081 1.01057 1.21289 0.94899 0.96313 0.83424 0.89743 1.22166 0.97640 1.00200 0.97096 1.20239 0.90247 0.88200 0.95239 0.93288 1.42500 1.13833 1.04859 1.75209 1.19284 0.89846 0.94221 1.33339 0.91186 1.24712 0.98227 0.95939 1.02040 1.69664 1.36433 1.00637 1.51380 0.86155 0.84810 0.77587 0.77870 1.20625 1.21993 1.21982 1.22434 1.01206 0.97648 0.97106 1.23130 0.77284 1.03532 1.02081 1.48033 1.08661 1.53933 1.18735 1.16822 0.85489 0.79620 0.80821 1.90873 1.16456 1.57739 1.76323 1.27779 0.90855 1.05815 1.02208 1.65840 1.17696 1.12618 1.16369 1.21940 0.97510 0.98873 0.91753 1.26889 0.98312 1.08763 1.05920 1.83760 1.06268 1.41811 1.17573 1.20692 0.96974 0.97033 0.92854 1.22337 0.94839 0.98399 0.99955 1.20922 0.92755 0.97156 0.97407 0.90544 0.93550 0.92128 0.90549 0.92152 0.78199 0.93624 0.91040 0.93801 0.90352 0.83944 0.89501 0.90218 0.90315 0.89438 0.89651 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 7.60 37.16 0.28 -1.95 16 2 C 0.14 2.54 3.18 -67.82 -0.22 2.33 16 3 H 0.08 1.68 6.64 -51.93 -0.34 1.34 16 4 C -0.13 -2.28 5.05 -26.83 -0.14 -2.42 16 5 C 0.17 3.40 3.10 -67.89 -0.21 3.19 16 6 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 7 N -0.72 -17.62 4.31 -53.38 -0.23 -17.85 16 8 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 9 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 10 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 11 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 12 Si 0.90 22.30 29.55 -169.99 -5.02 17.28 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 15 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 16 C -0.14 -2.62 5.78 -26.61 -0.15 -2.77 16 17 C 0.06 1.13 6.07 -3.71 -0.02 1.11 16 18 N -0.56 -10.02 2.98 -166.80 -0.50 -10.51 16 19 C 0.59 10.15 7.48 -12.60 -0.09 10.05 16 20 O -0.54 -9.66 12.52 5.26 0.07 -9.59 16 21 C 0.01 0.15 7.25 -14.76 -0.11 0.04 16 22 N -0.41 -6.10 6.84 -6.78 -0.05 -6.15 16 23 C 0.03 0.42 7.62 -82.49 -0.63 -0.21 16 24 C -0.28 -2.92 7.17 -34.97 -0.25 -3.17 16 25 S 0.25 2.91 23.04 -107.50 -2.48 0.44 16 26 C -0.04 -0.24 6.80 -26.63 -0.18 -0.43 16 27 C -0.12 -0.68 7.11 -25.50 -0.18 -0.86 16 28 C -0.04 -0.37 6.81 -26.24 -0.18 -0.55 16 29 H 0.08 1.31 6.56 -51.93 -0.34 0.97 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.99 6.94 -51.93 -0.36 0.63 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.38 9.98 6.07 -40.82 -0.25 9.74 16 35 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.69 7.74 -51.93 -0.40 1.29 16 39 H 0.14 2.49 3.66 -83.32 -0.30 2.18 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.34 8.14 -51.92 -0.42 -0.08 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 361.43 15.07 5.45 5.45 Total: -1.00 -31.17 361.43 -10.97 -42.15 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -6.62 Total: 8.66 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -2.32 Total: -2.66 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -0.05 Total: -61.72 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.07 Total: -9.59 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -2.48 Total: 0.44 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.17 -10.97 -42.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044682903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.524 kcal (2) G-P(sol) polarization free energy of solvation -31.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds