Wall clock time and date at job start Tue Mar 31 2020 19:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.70469 * 2 1 4 4 C 1.52763 * 109.51155 * 239.87963 * 2 1 3 5 5 C 1.53044 * 109.38308 * 185.70951 * 4 2 1 6 6 H 1.08997 * 109.45937 * 181.26364 * 5 4 2 7 7 N 1.46498 * 109.45716 * 301.21878 * 5 4 2 8 8 C 1.36941 * 120.00032 * 205.06639 * 7 5 4 9 9 H 1.08005 * 119.99565 * 0.02562 * 8 7 5 10 10 C 1.38814 * 120.00236 * 180.02562 * 8 7 5 11 11 N 1.31614 * 119.99679 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99814 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47276 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46828 * 120.00414 * 12 10 8 15 15 H 1.48498 * 109.46892 * 240.00139 * 12 10 8 16 16 C 1.53035 * 109.53965 * 61.23910 * 5 4 2 17 17 C 1.53192 * 109.31389 * 298.63698 * 16 5 4 18 18 N 1.46923 * 108.77439 * 54.63437 * 17 16 5 19 19 C 1.34783 * 120.62810 * 126.37478 * 18 17 16 20 20 O 1.21621 * 119.99721 * 173.96426 * 19 18 17 21 21 C 1.47249 * 120.00087 * 354.22835 * 19 18 17 22 22 N 1.29766 * 125.52806 * 5.55939 * 21 19 18 23 23 C 1.32590 * 116.75561 * 179.76850 * 22 21 19 24 24 C 1.34626 * 114.31114 * 0.54101 * 23 22 21 25 25 S 1.71620 * 109.59842 * 359.68962 * 24 23 22 26 26 C 1.51938 * 110.68747 * 179.64393 * 24 23 22 27 27 C 1.54224 * 104.85172 * 342.61761 * 26 24 23 28 28 C 1.52801 * 136.15598 * 180.19349 * 23 22 21 29 29 H 1.09000 * 109.46962 * 305.93820 * 1 2 3 30 30 H 1.09000 * 109.46911 * 65.93535 * 1 2 3 31 31 H 1.08999 * 109.47216 * 185.93203 * 1 2 3 32 32 H 1.08999 * 109.56288 * 65.67362 * 4 2 1 33 33 H 1.08999 * 109.38652 * 305.63529 * 4 2 1 34 34 H 0.97002 * 120.00721 * 25.07240 * 7 5 4 35 35 H 0.97002 * 120.00019 * 180.02562 * 11 10 8 36 36 H 1.08994 * 109.49667 * 178.68085 * 16 5 4 37 37 H 1.09000 * 109.49549 * 58.58929 * 16 5 4 38 38 H 1.08997 * 109.58588 * 294.84186 * 17 16 5 39 39 H 1.09008 * 109.58667 * 174.42390 * 17 16 5 40 40 H 1.09001 * 110.36766 * 101.44653 * 26 24 23 41 41 H 1.09003 * 110.36683 * 223.76099 * 26 24 23 42 42 H 1.09006 * 110.94549 * 268.37185 * 27 26 24 43 43 H 1.09007 * 110.98993 * 144.67227 * 27 26 24 44 44 H 1.09001 * 110.31667 * 316.81931 * 28 23 22 45 45 H 1.08998 * 110.31082 * 78.90320 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0402 -0.7226 -1.2455 5 6 3.5639 -0.8463 -1.1725 6 1 3.9314 -1.3417 -2.0711 7 7 4.1578 0.4893 -1.0743 8 6 5.4418 0.7007 -1.5007 9 1 6.0165 -0.1172 -1.9097 10 6 6.0048 1.9661 -1.4072 11 7 5.3046 2.9626 -0.9083 12 14 7.7561 2.2545 -1.9895 13 1 8.3222 0.9822 -2.5052 14 1 7.7567 3.2709 -3.0722 15 1 8.5815 2.7400 -0.8545 16 6 3.9523 -1.6687 0.0583 17 6 3.4644 -0.9519 1.3212 18 7 2.0225 -0.6996 1.1945 19 6 1.1673 -1.1069 2.1533 20 8 -0.0073 -0.7973 2.0919 21 6 1.6561 -1.9219 3.2780 22 7 2.8972 -2.2231 3.5076 23 6 3.1429 -2.9667 4.5775 24 6 2.0450 -3.3149 5.2745 25 16 0.6519 -2.6507 4.5239 26 6 2.4192 -4.1696 6.4737 27 6 3.8476 -4.6679 6.1737 28 6 4.3824 -3.5576 5.2479 29 1 -0.3633 0.6032 0.8321 30 1 -0.3633 0.4191 -0.9384 31 1 -0.3633 -1.0221 0.1062 32 1 1.7633 -0.1566 -2.1349 33 1 1.5964 -1.7169 -1.2942 34 1 3.6416 1.2240 -0.7073 35 1 5.6978 3.8470 -0.8433 36 1 5.0362 -1.7762 0.0967 37 1 3.4905 -2.6542 -0.0022 38 1 3.9928 -0.0050 1.4312 39 1 3.6503 -1.5798 2.1926 40 1 2.4102 -3.5705 7.3842 41 1 1.7349 -5.0129 6.5668 42 1 3.8251 -5.6281 5.6583 43 1 4.4387 -4.7319 7.0873 44 1 5.0527 -3.9796 4.4991 45 1 4.8985 -2.7938 5.8294 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044682903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:29 Heat of formation + Delta-G solvation = 37.264408 kcal Electronic energy + Delta-G solvation = -27411.966161 eV Core-core repulsion = 23749.881204 eV Total energy + Delta-G solvation = -3662.084957 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.00421 -41.02732 -38.91909 -37.09240 -35.89092 -33.88841 -33.64075 -30.93273 -29.73076 -29.45883 -28.37529 -26.36203 -25.72298 -24.96199 -23.62585 -22.43968 -21.50715 -20.58056 -19.56764 -19.22228 -19.07019 -17.50335 -17.27093 -16.91895 -16.68538 -16.18454 -15.81823 -15.62476 -15.45253 -15.09419 -14.83462 -14.71660 -14.35470 -14.26974 -14.13805 -13.73758 -13.51100 -13.35985 -13.01322 -12.94932 -12.88864 -12.71178 -12.53359 -12.27678 -12.15007 -12.09162 -12.07381 -11.99199 -11.86718 -11.68023 -11.43963 -11.02797 -10.65780 -10.49780 -10.01412 -9.74023 -9.48808 -8.96295 -7.91343 -5.18934 -0.82991 -0.06624 0.65992 1.14415 1.47660 1.47772 1.57767 1.92928 2.02634 2.57746 2.64218 3.41526 3.44271 3.48990 3.81610 3.86798 3.97898 4.03468 4.10873 4.16380 4.34344 4.39291 4.43818 4.47826 4.53645 4.62051 4.72003 4.78189 4.81772 4.88672 4.89677 5.02327 5.07731 5.08463 5.14332 5.18792 5.21184 5.31900 5.32096 5.37325 5.48480 5.56143 5.75734 6.28523 6.30464 6.41450 6.94529 7.36936 8.12559 8.36539 9.32424 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003599 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.051496 B = 7777.121949 C = 9256.445010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.143 3.857 3 H 0.053 0.947 4 C -0.121 4.121 5 C 0.164 3.836 6 H 0.050 0.950 7 N -0.730 5.730 8 C -0.231 4.231 9 H 0.076 0.924 10 C -0.076 4.076 11 N -0.971 5.971 12 Si 0.969 3.031 13 H -0.265 1.265 14 H -0.296 1.296 15 H -0.297 1.297 16 C -0.132 4.132 17 C 0.073 3.927 18 N -0.571 5.571 19 C 0.589 3.411 20 O -0.549 6.549 21 C -0.040 4.040 22 N -0.427 5.427 23 C 0.003 3.997 24 C -0.257 4.257 25 S 0.288 5.712 26 C -0.038 4.038 27 C -0.105 4.105 28 C -0.046 4.046 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.372 0.628 35 H 0.248 0.752 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.036 0.964 39 H 0.159 0.841 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.115 0.885 44 H 0.083 0.917 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.988 -19.074 16.170 26.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.040 3.960 3 H 0.071 0.929 4 C -0.159 4.159 5 C 0.056 3.944 6 H 0.068 0.932 7 N -0.371 5.371 8 C -0.363 4.363 9 H 0.094 0.906 10 C -0.268 4.268 11 N -0.622 5.622 12 Si 0.799 3.201 13 H -0.190 1.190 14 H -0.224 1.224 15 H -0.225 1.225 16 C -0.173 4.173 17 C -0.049 4.049 18 N -0.301 5.301 19 C 0.374 3.626 20 O -0.429 6.429 21 C -0.314 4.314 22 N -0.145 5.145 23 C -0.132 4.132 24 C -0.380 4.380 25 S 0.545 5.455 26 C -0.077 4.077 27 C -0.144 4.144 28 C -0.085 4.085 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.205 0.795 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.054 0.946 39 H 0.174 0.826 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.104 0.896 43 H 0.133 0.867 44 H 0.101 0.899 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.191 -18.735 15.820 26.187 hybrid contribution 1.919 1.161 -0.482 2.295 sum -7.272 -17.573 15.338 24.433 Atomic orbital electron populations 1.22066 0.91668 1.02948 1.01396 1.21215 0.95944 0.94875 0.83998 0.92888 1.22054 0.95622 1.01396 0.96867 1.20468 0.91875 0.86246 0.95823 0.93219 1.42655 1.13163 1.06368 1.74951 1.19654 0.90843 0.94185 1.31614 0.90603 1.25477 1.02026 0.95979 1.03299 1.69829 1.38065 1.00775 1.53526 0.85133 0.80427 0.77698 0.76888 1.18968 1.22390 1.22451 1.22288 1.00574 0.98325 0.96134 1.22980 0.77529 1.01527 1.02906 1.48003 1.08379 1.54551 1.19203 1.17059 0.85227 0.79321 0.80973 1.90848 1.16878 1.58328 1.76855 1.27299 0.92079 1.08424 1.03611 1.65568 1.18024 1.13043 1.17874 1.22526 0.99740 0.99333 0.91609 1.27569 0.97194 1.07026 1.06201 1.83561 1.05757 1.40398 1.15748 1.20985 0.97895 0.97282 0.91545 1.22382 0.94195 0.97396 1.00419 1.21127 0.91592 0.98094 0.97711 0.91879 0.91873 0.91978 0.90373 0.89845 0.79496 0.94308 0.92210 0.91524 0.94568 0.82562 0.87617 0.88085 0.89588 0.86709 0.89876 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.00 7.60 71.98 0.55 -3.45 16 2 C 0.14 5.21 3.18 44.83 0.14 5.35 16 3 H 0.05 2.26 6.64 -2.39 -0.02 2.24 16 4 C -0.12 -4.15 5.05 30.53 0.15 -4.00 16 5 C 0.16 6.59 3.10 45.02 0.14 6.73 16 6 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 7 N -0.73 -36.78 4.31 -322.81 -1.39 -38.17 16 8 C -0.23 -12.78 9.93 84.03 0.83 -11.94 16 9 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 10 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 11 N -0.97 -60.20 13.06 21.65 0.28 -59.92 16 12 Si 0.97 46.67 29.55 68.60 2.03 48.70 16 13 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 14 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 15 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 16 C -0.13 -4.88 5.78 30.67 0.18 -4.70 16 17 C 0.07 2.78 6.07 86.36 0.52 3.31 16 18 N -0.57 -20.93 2.98 -799.86 -2.38 -23.31 16 19 C 0.59 20.66 7.48 86.61 0.65 21.31 16 20 O -0.55 -20.05 12.52 -4.10 -0.05 -20.10 16 21 C -0.04 -1.23 7.25 87.37 0.63 -0.59 16 22 N -0.43 -12.71 6.84 -175.37 -1.20 -13.91 16 23 C 0.00 0.06 7.62 42.30 0.32 0.38 16 24 C -0.26 -4.76 7.17 25.25 0.18 -4.58 16 25 S 0.29 6.31 23.04 -56.49 -1.30 5.01 16 26 C -0.04 -0.35 6.80 30.66 0.21 -0.14 16 27 C -0.10 -0.80 7.11 31.39 0.22 -0.58 16 28 C -0.05 -0.68 6.81 30.91 0.21 -0.47 16 29 H 0.06 2.21 6.56 -2.39 -0.02 2.19 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 31 H 0.06 1.99 6.94 -2.39 -0.02 1.97 16 32 H 0.08 2.65 8.14 -2.39 -0.02 2.64 16 33 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.37 20.37 6.07 -92.71 -0.56 19.81 16 35 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 36 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.04 1.66 7.74 -2.39 -0.02 1.65 16 39 H 0.16 5.62 3.66 -64.38 -0.24 5.39 16 40 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.09 0.57 8.14 -2.38 -0.02 0.56 16 43 H 0.11 0.32 8.14 -2.38 -0.02 0.30 16 44 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -69.76 361.43 1.63 -68.13 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: 0.23 Total: 30.86 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 5.41 Total: 2.71 kcal Atomic # 7 Polarization: -130.62 SS G_CDS: -4.69 Total: -135.31 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.05 Total: -20.10 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Atomic # 16 Polarization: 6.31 SS G_CDS: -1.30 Total: 5.01 kcal Total: -69.76 1.63 -68.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044682903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.397 kcal (2) G-P(sol) polarization free energy of solvation -69.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds