Wall clock time and date at job start Tue Mar 31 2020 19:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.70069 * 2 1 4 4 C 1.53634 * 109.66107 * 120.58969 * 2 1 3 5 5 C 1.53044 * 109.24027 * 174.54964 * 4 2 1 6 6 H 1.09005 * 109.44793 * 58.52391 * 5 4 2 7 7 N 1.46496 * 109.45844 * 178.49028 * 5 4 2 8 8 C 1.36936 * 119.99766 * 205.06991 * 7 5 4 9 9 H 1.07999 * 120.00201 * 0.02562 * 8 7 5 10 10 C 1.38819 * 119.99753 * 180.02562 * 8 7 5 11 11 N 1.31608 * 119.99944 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99728 * 179.97438 * 10 8 7 13 13 H 1.48492 * 109.46918 * 59.99947 * 12 10 8 14 14 H 1.48495 * 109.46976 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47076 * 299.99927 * 12 10 8 16 16 C 1.53042 * 109.53645 * 298.51120 * 5 4 2 17 17 C 1.53192 * 109.31158 * 61.36718 * 16 5 4 18 18 N 1.46926 * 109.58746 * 239.63976 * 2 1 3 19 19 C 1.34765 * 120.63134 * 6.62992 * 18 2 1 20 20 O 1.21625 * 120.00224 * 353.41010 * 19 18 2 21 21 C 1.47251 * 120.00362 * 173.68187 * 19 18 2 22 22 N 1.29770 * 125.52546 * 351.24771 * 21 19 18 23 23 C 1.32596 * 116.75921 * 179.82427 * 22 21 19 24 24 C 1.34634 * 114.30457 * 0.43723 * 23 22 21 25 25 S 1.71620 * 109.59910 * 359.79197 * 24 23 22 26 26 C 1.51941 * 110.67896 * 179.81250 * 24 23 22 27 27 C 1.54230 * 104.85128 * 17.40307 * 26 24 23 28 28 C 1.52795 * 136.15746 * 180.02562 * 23 22 21 29 29 H 1.08999 * 109.47186 * 174.61631 * 1 2 3 30 30 H 1.08994 * 109.47186 * 294.61599 * 1 2 3 31 31 H 1.08996 * 109.46684 * 54.61902 * 1 2 3 32 32 H 1.09000 * 109.63334 * 54.55806 * 4 2 1 33 33 H 1.08997 * 109.43234 * 294.41530 * 4 2 1 34 34 H 0.96998 * 120.00162 * 25.07249 * 7 5 4 35 35 H 0.97008 * 120.00232 * 180.02562 * 11 10 8 36 36 H 1.08999 * 109.49871 * 301.41291 * 16 5 4 37 37 H 1.09005 * 109.52130 * 181.32909 * 16 5 4 38 38 H 1.09002 * 109.58365 * 185.57606 * 17 16 5 39 39 H 1.08999 * 109.58741 * 65.15223 * 17 16 5 40 40 H 1.09005 * 110.36289 * 136.24464 * 26 24 23 41 41 H 1.09000 * 110.36258 * 258.55792 * 26 24 23 42 42 H 1.09002 * 110.95699 * 91.61271 * 27 26 24 43 43 H 1.09002 * 110.95123 * 215.29830 * 27 26 24 44 44 H 1.09000 * 110.31191 * 43.88300 * 28 23 22 45 45 H 1.08998 * 110.40063 * 281.74173 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0469 -0.7362 1.2454 5 6 3.5712 -0.8498 1.1678 6 1 4.0063 0.1473 1.0991 7 7 4.0725 -1.5193 2.3705 8 6 5.3564 -1.2983 2.7923 9 1 5.9993 -0.6301 2.2385 10 6 5.8317 -1.9331 3.9316 11 7 5.0482 -2.7470 4.6067 12 14 7.5834 -1.6321 4.5066 13 1 7.7675 -0.1877 4.7974 14 1 7.8429 -2.4214 5.7373 15 1 8.5320 -2.0476 3.4422 16 6 3.9615 -1.6628 -0.0686 17 6 3.4657 -0.9421 -1.3262 18 7 2.0226 -0.6996 -1.1944 19 6 1.1676 -1.1063 -2.1535 20 8 -0.0321 -1.0036 -1.9820 21 6 1.6856 -1.6804 -3.4066 22 7 2.9315 -1.6990 -3.7690 23 6 3.2054 -2.2658 -4.9360 24 6 2.1272 -2.7392 -5.5887 25 16 0.7157 -2.4452 -4.6578 26 6 2.5332 -3.3648 -6.9125 27 6 4.0509 -3.6083 -6.7856 28 6 4.4609 -2.5263 -5.7671 29 1 -0.3633 -1.0231 -0.0964 30 1 -0.3633 0.4280 0.9342 31 1 -0.3632 0.5950 -0.8379 32 1 1.6095 -1.7337 1.2891 33 1 1.7688 -0.1771 2.1387 34 1 3.4951 -2.1192 2.8680 35 1 5.3801 -3.1904 5.4031 36 1 3.5061 -2.6516 -0.0126 37 1 5.0461 -1.7636 -0.1108 38 1 3.6533 -1.5638 -2.2016 39 1 3.9878 0.0088 -1.4322 40 1 2.0089 -4.3086 -7.0627 41 1 2.3264 -2.6800 -7.7349 42 1 4.2545 -4.6065 -6.3979 43 1 4.5517 -3.4539 -7.7414 44 1 5.2668 -2.8917 -5.1307 45 1 4.7698 -1.6176 -6.2837 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044682904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:33 Heat of formation + Delta-G solvation = 51.376288 kcal Electronic energy + Delta-G solvation = -26889.800318 eV Core-core repulsion = 23228.327298 eV Total energy + Delta-G solvation = -3661.473020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.94830 -40.00842 -37.37159 -36.35019 -34.47332 -32.56043 -31.90670 -29.43307 -29.01013 -28.53580 -27.03723 -25.33067 -24.14033 -22.79392 -22.53411 -21.43605 -20.43255 -19.73347 -18.72386 -18.23354 -17.09318 -16.50263 -16.21651 -15.81371 -15.38219 -14.85840 -14.58620 -14.24804 -14.02248 -13.79325 -13.63544 -13.47089 -13.26976 -13.19770 -13.01560 -12.59313 -12.34756 -12.17730 -12.00668 -11.64427 -11.56543 -11.46732 -11.43187 -11.30206 -10.87496 -10.82349 -10.71611 -10.51064 -10.24014 -9.87682 -9.74225 -9.69428 -9.53842 -9.11386 -8.83846 -8.80853 -8.38414 -6.94030 -5.74954 -3.03767 0.09065 0.81500 1.51798 2.07255 2.99237 3.08889 3.44534 3.48922 3.49982 3.53682 4.06869 4.29945 4.54674 4.59308 4.61997 4.99003 5.10747 5.15680 5.19850 5.22859 5.32552 5.37893 5.43910 5.48845 5.54378 5.59868 5.66506 5.71137 5.72671 5.81479 5.93937 6.04876 6.14196 6.24350 6.39031 6.43237 6.51138 6.56781 6.59403 6.79472 6.97391 7.11793 7.24230 7.48065 7.70612 8.09566 8.43431 9.54441 10.12548 10.47538 11.47669 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013765 B = 0.003112 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.623465 B = 8994.901355 C =10602.735789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.146 3.854 3 H 0.076 0.924 4 C -0.133 4.133 5 C 0.177 3.823 6 H 0.047 0.953 7 N -0.724 5.724 8 C -0.238 4.238 9 H 0.070 0.930 10 C -0.014 4.014 11 N -0.933 5.933 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.148 4.148 17 C 0.076 3.924 18 N -0.571 5.571 19 C 0.594 3.406 20 O -0.530 6.530 21 C 0.002 3.998 22 N -0.411 5.411 23 C 0.033 3.967 24 C -0.273 4.273 25 S 0.251 5.749 26 C -0.037 4.037 27 C -0.117 4.117 28 C -0.042 4.042 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.383 0.617 35 H 0.255 0.745 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.130 0.870 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.074 0.639 -25.219 26.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.043 3.957 3 H 0.094 0.906 4 C -0.172 4.172 5 C 0.067 3.933 6 H 0.065 0.935 7 N -0.364 5.364 8 C -0.370 4.370 9 H 0.088 0.912 10 C -0.210 4.210 11 N -0.582 5.582 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.189 4.189 17 C -0.046 4.046 18 N -0.303 5.303 19 C 0.377 3.623 20 O -0.408 6.408 21 C -0.274 4.274 22 N -0.128 5.128 23 C -0.102 4.102 24 C -0.396 4.396 25 S 0.509 5.491 26 C -0.076 4.076 27 C -0.156 4.156 28 C -0.082 4.082 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.147 0.853 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.279 0.811 -24.762 26.122 hybrid contribution 1.905 -0.124 0.354 1.942 sum -6.373 0.687 -24.408 25.236 Atomic orbital electron populations 1.22232 0.92737 1.04031 1.00490 1.21548 0.95529 0.95144 0.83520 0.90647 1.22369 0.97681 1.00911 0.96280 1.20211 0.90782 0.95067 0.87256 0.93476 1.42418 1.12991 1.54002 1.27016 1.19199 0.89220 1.21921 1.06629 0.91236 1.24740 0.98129 0.99849 0.98237 1.69651 1.35516 1.33320 1.19681 0.86283 0.84665 0.77450 0.77886 1.21286 1.21741 1.21294 1.22651 1.01600 0.99796 0.94861 1.22835 0.77768 1.01990 1.02057 1.48019 1.08457 1.55014 1.18776 1.16822 0.85780 0.78509 0.81173 1.90902 1.14391 1.56746 1.78712 1.27658 0.91016 1.07128 1.01597 1.66020 1.16911 1.16185 1.13729 1.21889 0.97818 0.99886 0.90607 1.26936 0.98378 1.09051 1.05248 1.83800 1.06200 1.49869 1.09241 1.20709 0.96217 1.00170 0.90544 1.22347 0.94266 0.99382 0.99598 1.20915 0.92840 0.99545 0.94857 0.90639 0.93458 0.91652 0.91683 0.90478 0.78302 0.93486 0.92575 0.90718 0.85274 0.91800 0.90121 0.89482 0.90190 0.89414 0.89598 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 7.60 37.16 0.28 -1.71 16 2 C 0.15 2.21 3.51 -67.37 -0.24 1.97 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.13 -2.31 4.86 -26.38 -0.13 -2.43 16 5 C 0.18 3.54 2.73 -67.89 -0.19 3.35 16 6 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 7 N -0.72 -18.22 5.12 -53.38 -0.27 -18.50 16 8 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 9 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 10 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 11 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 12 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 C -0.15 -2.71 5.66 -26.61 -0.15 -2.86 16 17 C 0.08 1.18 6.09 -3.71 -0.02 1.16 16 18 N -0.57 -8.87 2.97 -166.28 -0.49 -9.36 16 19 C 0.59 9.24 7.59 -12.60 -0.10 9.15 16 20 O -0.53 -8.78 12.35 5.26 0.06 -8.72 16 21 C 0.00 0.03 7.16 -14.76 -0.11 -0.07 16 22 N -0.41 -5.56 7.00 -6.78 -0.05 -5.60 16 23 C 0.03 0.37 7.62 -82.49 -0.63 -0.26 16 24 C -0.27 -2.67 7.17 -34.97 -0.25 -2.92 16 25 S 0.25 2.74 23.04 -107.50 -2.48 0.27 16 26 C -0.04 -0.23 6.80 -26.63 -0.18 -0.41 16 27 C -0.12 -0.62 7.11 -25.48 -0.18 -0.80 16 28 C -0.04 -0.32 6.81 -26.23 -0.18 -0.50 16 29 H 0.07 1.20 6.57 -51.93 -0.34 0.86 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.96 6.91 -51.93 -0.36 0.60 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.38 10.34 7.80 -40.82 -0.32 10.03 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.13 1.97 4.16 -62.95 -0.26 1.71 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 366.06 15.07 5.52 5.52 Total: -1.00 -31.80 366.06 -11.06 -42.86 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -6.74 Total: 7.35 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -2.31 Total: -3.58 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: -0.09 Total: -61.09 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.06 Total: -8.72 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -2.48 Total: 0.27 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.80 -11.06 -42.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044682904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.237 kcal (2) G-P(sol) polarization free energy of solvation -31.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds