Wall clock time and date at job start Tue Mar 31 2020 19:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.70069 * 2 1 4 4 C 1.53634 * 109.66107 * 120.58969 * 2 1 3 5 5 C 1.53044 * 109.24027 * 174.54964 * 4 2 1 6 6 H 1.09005 * 109.44793 * 58.52391 * 5 4 2 7 7 N 1.46496 * 109.45844 * 178.49028 * 5 4 2 8 8 C 1.36936 * 119.99766 * 205.06991 * 7 5 4 9 9 H 1.07999 * 120.00201 * 0.02562 * 8 7 5 10 10 C 1.38819 * 119.99753 * 180.02562 * 8 7 5 11 11 N 1.31608 * 119.99944 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99728 * 179.97438 * 10 8 7 13 13 H 1.48492 * 109.46918 * 59.99947 * 12 10 8 14 14 H 1.48495 * 109.46976 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47076 * 299.99927 * 12 10 8 16 16 C 1.53042 * 109.53645 * 298.51120 * 5 4 2 17 17 C 1.53192 * 109.31158 * 61.36718 * 16 5 4 18 18 N 1.46926 * 109.58746 * 239.63976 * 2 1 3 19 19 C 1.34765 * 120.63134 * 6.62992 * 18 2 1 20 20 O 1.21625 * 120.00224 * 353.41010 * 19 18 2 21 21 C 1.47251 * 120.00362 * 173.68187 * 19 18 2 22 22 N 1.29770 * 125.52546 * 351.24771 * 21 19 18 23 23 C 1.32596 * 116.75921 * 179.82427 * 22 21 19 24 24 C 1.34634 * 114.30457 * 0.43723 * 23 22 21 25 25 S 1.71620 * 109.59910 * 359.79197 * 24 23 22 26 26 C 1.51941 * 110.67896 * 179.81250 * 24 23 22 27 27 C 1.54230 * 104.85128 * 17.40307 * 26 24 23 28 28 C 1.52795 * 136.15746 * 180.02562 * 23 22 21 29 29 H 1.08999 * 109.47186 * 174.61631 * 1 2 3 30 30 H 1.08994 * 109.47186 * 294.61599 * 1 2 3 31 31 H 1.08996 * 109.46684 * 54.61902 * 1 2 3 32 32 H 1.09000 * 109.63334 * 54.55806 * 4 2 1 33 33 H 1.08997 * 109.43234 * 294.41530 * 4 2 1 34 34 H 0.96998 * 120.00162 * 25.07249 * 7 5 4 35 35 H 0.97008 * 120.00232 * 180.02562 * 11 10 8 36 36 H 1.08999 * 109.49871 * 301.41291 * 16 5 4 37 37 H 1.09005 * 109.52130 * 181.32909 * 16 5 4 38 38 H 1.09002 * 109.58365 * 185.57606 * 17 16 5 39 39 H 1.08999 * 109.58741 * 65.15223 * 17 16 5 40 40 H 1.09005 * 110.36289 * 136.24464 * 26 24 23 41 41 H 1.09000 * 110.36258 * 258.55792 * 26 24 23 42 42 H 1.09002 * 110.95699 * 91.61271 * 27 26 24 43 43 H 1.09002 * 110.95123 * 215.29830 * 27 26 24 44 44 H 1.09000 * 110.31191 * 43.88300 * 28 23 22 45 45 H 1.08998 * 110.40063 * 281.74173 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0469 -0.7362 1.2454 5 6 3.5712 -0.8498 1.1678 6 1 4.0063 0.1473 1.0991 7 7 4.0725 -1.5193 2.3705 8 6 5.3564 -1.2983 2.7923 9 1 5.9993 -0.6301 2.2385 10 6 5.8317 -1.9331 3.9316 11 7 5.0482 -2.7470 4.6067 12 14 7.5834 -1.6321 4.5066 13 1 7.7675 -0.1877 4.7974 14 1 7.8429 -2.4214 5.7373 15 1 8.5320 -2.0476 3.4422 16 6 3.9615 -1.6628 -0.0686 17 6 3.4657 -0.9421 -1.3262 18 7 2.0226 -0.6996 -1.1944 19 6 1.1676 -1.1063 -2.1535 20 8 -0.0321 -1.0036 -1.9820 21 6 1.6856 -1.6804 -3.4066 22 7 2.9315 -1.6990 -3.7690 23 6 3.2054 -2.2658 -4.9360 24 6 2.1272 -2.7392 -5.5887 25 16 0.7157 -2.4452 -4.6578 26 6 2.5332 -3.3648 -6.9125 27 6 4.0509 -3.6083 -6.7856 28 6 4.4609 -2.5263 -5.7671 29 1 -0.3633 -1.0231 -0.0964 30 1 -0.3633 0.4280 0.9342 31 1 -0.3632 0.5950 -0.8379 32 1 1.6095 -1.7337 1.2891 33 1 1.7688 -0.1771 2.1387 34 1 3.4951 -2.1192 2.8680 35 1 5.3801 -3.1904 5.4031 36 1 3.5061 -2.6516 -0.0126 37 1 5.0461 -1.7636 -0.1108 38 1 3.6533 -1.5638 -2.2016 39 1 3.9878 0.0088 -1.4322 40 1 2.0089 -4.3086 -7.0627 41 1 2.3264 -2.6800 -7.7349 42 1 4.2545 -4.6065 -6.3979 43 1 4.5517 -3.4539 -7.7414 44 1 5.2668 -2.8917 -5.1307 45 1 4.7698 -1.6176 -6.2837 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044682904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:32 Heat of formation + Delta-G solvation = 32.661091 kcal Electronic energy + Delta-G solvation = -26890.611870 eV Core-core repulsion = 23228.327298 eV Total energy + Delta-G solvation = -3662.284572 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.97821 -41.01044 -38.79828 -37.07798 -36.20083 -33.90128 -33.67448 -31.12868 -29.71009 -29.42901 -28.36908 -26.34870 -25.89158 -24.35095 -23.56760 -22.33512 -21.65836 -20.95733 -19.83328 -19.12809 -19.06342 -17.52320 -17.13699 -17.00340 -16.71560 -16.43192 -15.70584 -15.55490 -15.43773 -15.10552 -14.81175 -14.65485 -14.63812 -14.20795 -13.95168 -13.73657 -13.52911 -13.36926 -13.10177 -13.00343 -12.83695 -12.70441 -12.63837 -12.23050 -12.22647 -12.10980 -12.07157 -12.03402 -11.87734 -11.74851 -11.40981 -11.02812 -10.70777 -10.48162 -10.17840 -9.78945 -9.53693 -9.00750 -7.93439 -5.22571 -0.82733 -0.06115 0.66765 1.13860 1.47285 1.50381 1.56335 1.87481 2.00964 2.56049 2.62780 3.39073 3.42306 3.48678 3.69994 3.80262 3.96276 4.05806 4.12098 4.15820 4.26722 4.30382 4.40841 4.52679 4.54615 4.60688 4.69263 4.72757 4.78757 4.84124 4.88582 4.98841 4.99525 5.06853 5.10806 5.13487 5.19429 5.31461 5.32366 5.40457 5.46177 5.52002 5.69077 6.21458 6.27906 6.37768 6.91629 7.33747 8.08627 8.32934 9.30018 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013765 B = 0.003112 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.623465 B = 8994.901355 C =10602.735789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.149 3.851 3 H 0.091 0.909 4 C -0.122 4.122 5 C 0.173 3.827 6 H 0.049 0.951 7 N -0.737 5.737 8 C -0.238 4.238 9 H 0.077 0.923 10 C -0.077 4.077 11 N -0.972 5.972 12 Si 0.973 3.027 13 H -0.277 1.277 14 H -0.297 1.297 15 H -0.277 1.277 16 C -0.135 4.135 17 C 0.090 3.910 18 N -0.578 5.578 19 C 0.592 3.408 20 O -0.546 6.546 21 C -0.042 4.042 22 N -0.424 5.424 23 C 0.004 3.996 24 C -0.258 4.258 25 S 0.275 5.725 26 C -0.038 4.038 27 C -0.108 4.108 28 C -0.043 4.043 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.370 0.630 35 H 0.250 0.750 36 H 0.038 0.962 37 H 0.062 0.938 38 H 0.137 0.863 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.081 0.919 43 H 0.116 0.884 44 H 0.081 0.919 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.426 1.024 -28.161 28.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.046 3.954 3 H 0.109 0.891 4 C -0.161 4.161 5 C 0.065 3.935 6 H 0.067 0.933 7 N -0.376 5.376 8 C -0.370 4.370 9 H 0.095 0.905 10 C -0.269 4.269 11 N -0.623 5.623 12 Si 0.801 3.199 13 H -0.203 1.203 14 H -0.224 1.224 15 H -0.203 1.203 16 C -0.176 4.176 17 C -0.033 4.033 18 N -0.309 5.309 19 C 0.377 3.623 20 O -0.425 6.425 21 C -0.316 4.316 22 N -0.143 5.143 23 C -0.131 4.131 24 C -0.381 4.381 25 S 0.532 5.468 26 C -0.078 4.078 27 C -0.147 4.147 28 C -0.083 4.083 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.202 0.798 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.154 0.846 39 H 0.093 0.907 40 H 0.115 0.885 41 H 0.126 0.874 42 H 0.099 0.901 43 H 0.134 0.866 44 H 0.100 0.900 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.639 1.232 -27.746 28.804 hybrid contribution 1.647 -0.277 1.102 2.001 sum -5.992 0.955 -26.644 27.326 Atomic orbital electron populations 1.22089 0.91959 1.03020 1.01250 1.21544 0.96035 0.95427 0.82417 0.89088 1.22220 0.95590 1.00553 0.97708 1.20421 0.92445 0.94659 0.85983 0.93325 1.42627 1.12292 1.54187 1.28481 1.19597 0.90187 1.20970 1.06256 0.90485 1.25564 1.02154 1.00333 0.98846 1.69820 1.37353 1.34910 1.20176 0.85223 0.80073 0.77473 0.77085 1.20304 1.22383 1.20343 1.22433 1.00644 0.98934 0.95613 1.22709 0.77941 1.02223 1.00439 1.48031 1.08370 1.55419 1.19097 1.17033 0.85569 0.77971 0.81690 1.90881 1.14931 1.57360 1.79353 1.27297 0.92052 1.10007 1.02218 1.65873 1.16990 1.16382 1.15019 1.22504 0.99887 1.00335 0.90377 1.27561 0.97296 1.07043 1.06198 1.83664 1.06207 1.48726 1.08169 1.20980 0.96871 1.01068 0.88856 1.22394 0.93601 0.98526 1.00148 1.21104 0.91328 1.00944 0.94908 0.92387 0.91932 0.91681 0.93058 0.90422 0.79812 0.94115 0.94357 0.91957 0.84609 0.90748 0.88531 0.87386 0.90067 0.86586 0.90017 0.88304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.59 7.60 71.98 0.55 -3.05 16 2 C 0.15 4.46 3.51 45.12 0.16 4.61 16 3 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 4 C -0.12 -4.26 4.86 30.82 0.15 -4.11 16 5 C 0.17 7.01 2.73 45.02 0.12 7.14 16 6 H 0.05 1.96 8.08 -2.38 -0.02 1.95 16 7 N -0.74 -37.93 5.12 -322.80 -1.65 -39.58 16 8 C -0.24 -13.32 9.93 84.04 0.83 -12.48 16 9 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 10 C -0.08 -4.46 5.50 84.87 0.47 -4.00 16 11 N -0.97 -60.41 13.06 21.65 0.28 -60.13 16 12 Si 0.97 46.43 29.55 68.60 2.03 48.46 16 13 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 14 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 15 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 16 C -0.14 -5.05 5.66 30.67 0.17 -4.87 16 17 C 0.09 2.76 6.09 86.36 0.53 3.29 16 18 N -0.58 -17.91 2.97 -798.25 -2.37 -20.28 16 19 C 0.59 18.52 7.59 86.61 0.66 19.18 16 20 O -0.55 -18.24 12.35 -4.11 -0.05 -18.29 16 21 C -0.04 -1.15 7.16 87.37 0.63 -0.53 16 22 N -0.42 -11.23 7.00 -175.37 -1.23 -12.46 16 23 C 0.00 0.08 7.62 42.30 0.32 0.40 16 24 C -0.26 -4.46 7.17 25.26 0.18 -4.28 16 25 S 0.27 5.70 23.04 -56.49 -1.30 4.40 16 26 C -0.04 -0.33 6.80 30.66 0.21 -0.12 16 27 C -0.11 -0.75 7.11 31.40 0.22 -0.52 16 28 C -0.04 -0.56 6.81 30.92 0.21 -0.35 16 29 H 0.06 1.86 6.57 -2.39 -0.02 1.85 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.87 6.91 -2.39 -0.02 1.85 16 32 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 33 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.37 20.71 7.80 -92.71 -0.72 19.99 16 35 H 0.25 15.12 8.31 -92.70 -0.77 14.35 16 36 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 38 H 0.14 4.14 4.16 -24.16 -0.10 4.04 16 39 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 41 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 44 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -69.77 366.06 1.32 -68.45 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.20 Total: 29.11 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 5.41 Total: 0.32 kcal Atomic # 7 Polarization: -127.49 SS G_CDS: -4.96 Total: -132.45 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.05 Total: -18.29 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Atomic # 16 Polarization: 5.70 SS G_CDS: -1.30 Total: 4.40 kcal Total: -69.77 1.32 -68.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044682904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.112 kcal (2) G-P(sol) polarization free energy of solvation -69.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds