Wall clock time and date at job start Tue Mar 31 2020 19:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.70016 * 2 1 4 4 C 1.52758 * 109.43182 * 120.16590 * 2 1 3 5 5 C 1.53035 * 109.38587 * 65.42008 * 4 2 1 6 6 H 1.08998 * 109.46357 * 301.21697 * 5 4 2 7 7 N 1.46504 * 109.45150 * 181.25180 * 5 4 2 8 8 C 1.36940 * 120.00150 * 154.93841 * 7 5 4 9 9 H 1.07995 * 119.99820 * 0.02562 * 8 7 5 10 10 C 1.38803 * 120.00005 * 180.02562 * 8 7 5 11 11 N 1.31625 * 120.00458 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00126 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46940 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47222 * 119.99779 * 12 10 8 15 15 H 1.48496 * 109.47357 * 240.00132 * 12 10 8 16 16 C 1.53038 * 109.53838 * 61.24104 * 5 4 2 17 17 C 1.53184 * 109.31221 * 298.63666 * 16 5 4 18 18 N 1.46926 * 109.58311 * 239.64398 * 2 1 3 19 19 C 1.34773 * 120.63115 * 113.84951 * 18 2 1 20 20 O 1.21690 * 120.00142 * 5.32983 * 19 18 2 21 21 C 1.46678 * 120.00185 * 185.33700 * 19 18 2 22 22 S 1.76218 * 126.13010 * 41.70241 * 21 19 18 23 23 C 1.70956 * 90.31513 * 179.97438 * 22 21 19 24 24 N 1.29425 * 110.39040 * 0.02562 * 23 22 21 25 25 C 1.30943 * 117.36487 * 359.97438 * 24 23 22 26 26 C 1.50703 * 122.90600 * 180.02562 * 25 24 23 27 27 C 1.53000 * 117.49761 * 8.59902 * 26 25 24 28 28 C 1.52998 * 60.00107 * 252.51065 * 27 26 25 29 29 H 1.08996 * 109.46887 * 180.35942 * 1 2 3 30 30 H 1.09000 * 109.46784 * 300.35399 * 1 2 3 31 31 H 1.08992 * 109.46949 * 60.35740 * 1 2 3 32 32 H 1.09011 * 109.56388 * 305.38681 * 4 2 1 33 33 H 1.09006 * 109.38672 * 185.35077 * 4 2 1 34 34 H 0.97000 * 119.99828 * 334.94499 * 7 5 4 35 35 H 0.96997 * 120.00287 * 179.97438 * 11 10 8 36 36 H 1.08997 * 109.49953 * 178.68239 * 16 5 4 37 37 H 1.09006 * 109.50087 * 58.58400 * 16 5 4 38 38 H 1.09005 * 109.59021 * 294.84142 * 17 16 5 39 39 H 1.09005 * 109.70489 * 174.49166 * 17 16 5 40 40 H 1.07998 * 124.80113 * 179.97438 * 23 22 21 41 41 H 1.08996 * 115.55166 * 154.30594 * 26 25 24 42 42 H 1.09001 * 117.49702 * 359.97438 * 27 26 25 43 43 H 1.08996 * 117.50008 * 145.02100 * 27 26 25 44 44 H 1.08996 * 117.49914 * 252.51226 * 28 27 26 45 45 H 1.09001 * 117.49992 * 107.48624 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0383 -0.7239 1.2455 5 6 1.6410 -2.2000 1.1727 6 1 0.5565 -2.2810 1.0997 7 7 2.1017 -2.8893 2.3805 8 6 1.4664 -4.0259 2.8047 9 1 0.6260 -4.4142 2.2486 10 6 1.9026 -4.6787 3.9494 11 7 2.9265 -4.2051 4.6274 12 14 1.0364 -6.2294 4.5276 13 1 -0.0763 -6.5507 3.5983 14 1 2.0029 -7.3566 4.5517 15 1 0.4937 -6.0135 5.8929 16 6 2.2843 -2.8430 -0.0580 17 6 1.7740 -2.1421 -1.3209 18 7 2.0225 -0.6996 -1.1945 19 6 2.6945 -0.0319 -2.1532 20 8 2.9832 1.1391 -1.9907 21 6 3.0776 -0.7164 -3.3925 22 16 2.0768 -1.8382 -4.3119 23 6 3.3328 -2.0371 -5.4545 24 7 4.3582 -1.3184 -5.1271 25 6 4.2658 -0.5995 -4.0366 26 6 5.3828 0.2820 -3.5400 27 6 6.5886 0.4803 -4.4606 28 6 6.7173 -0.3885 -3.2078 29 1 -0.3633 -1.0276 0.0064 30 1 -0.3633 0.5193 0.8868 31 1 -0.3633 0.5082 -0.8931 32 1 1.5988 -0.2723 2.1350 33 1 3.1241 -0.6413 1.2942 34 1 2.8567 -2.5407 2.8798 35 1 3.2311 -4.6611 5.4275 36 1 2.0200 -3.8998 -0.0964 37 1 3.3678 -2.7405 0.0023 38 1 0.7043 -2.3204 -1.4310 39 1 2.3004 -2.5285 -2.1938 40 1 3.2786 -2.6730 -6.3257 41 1 5.0763 1.1263 -2.9226 42 1 6.5743 -0.0271 -5.4252 43 1 7.0756 1.4554 -4.4490 44 1 7.2890 0.0150 -2.3721 45 1 6.7874 -1.4671 -3.3484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044774314.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:51 Heat of formation + Delta-G solvation = 52.505404 kcal Electronic energy + Delta-G solvation = -27170.711242 eV Core-core repulsion = 23509.287184 eV Total energy + Delta-G solvation = -3661.424058 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.79335 -39.80550 -37.57535 -36.62078 -34.60113 -32.83353 -31.87505 -30.61289 -29.35455 -27.34953 -26.37656 -24.28487 -23.38591 -23.05224 -22.45215 -22.33315 -21.06456 -19.46916 -18.40368 -18.19480 -17.12056 -16.85467 -16.55103 -15.60585 -15.36144 -14.94177 -14.71813 -14.58408 -14.30331 -14.05515 -13.83489 -13.53103 -13.44788 -13.01432 -12.84518 -12.59143 -12.54809 -11.96261 -11.76934 -11.63571 -11.62548 -11.33324 -10.98449 -10.94705 -10.91668 -10.80786 -10.52121 -10.51524 -10.22905 -10.19566 -9.83537 -9.80026 -9.66372 -9.50746 -8.97488 -8.86810 -8.58091 -7.01441 -5.81120 -3.10573 0.10162 0.91918 1.32685 2.25945 2.78195 3.05354 3.39498 3.44924 3.47489 3.75989 3.93598 4.38993 4.53908 4.57903 4.71366 4.89092 4.96365 5.01714 5.11164 5.19173 5.26633 5.31393 5.40943 5.51869 5.54971 5.57098 5.66701 5.69682 5.76216 5.85323 5.86898 6.00045 6.03152 6.09974 6.13095 6.24261 6.33833 6.41320 6.48637 6.57272 6.84203 6.99577 7.31410 7.42783 7.65081 8.05522 8.36911 9.48336 10.05596 10.40204 11.41394 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014633 B = 0.003122 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.984991 B = 8966.855535 C = 9061.141236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.098 0.902 4 C -0.134 4.134 5 C 0.179 3.821 6 H 0.052 0.948 7 N -0.724 5.724 8 C -0.240 4.240 9 H 0.071 0.929 10 C -0.012 4.012 11 N -0.931 5.931 12 Si 0.905 3.095 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.148 4.148 17 C 0.098 3.902 18 N -0.591 5.591 19 C 0.599 3.401 20 O -0.530 6.530 21 C -0.279 4.279 22 S 0.181 5.819 23 C 0.020 3.980 24 N -0.470 5.470 25 C 0.164 3.836 26 C -0.102 4.102 27 C -0.158 4.158 28 C -0.160 4.160 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.205 0.795 41 H 0.136 0.864 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.366 7.192 -20.424 21.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 H 0.116 0.884 4 C -0.173 4.173 5 C 0.069 3.931 6 H 0.070 0.930 7 N -0.364 5.364 8 C -0.371 4.371 9 H 0.089 0.911 10 C -0.208 4.208 11 N -0.579 5.579 12 Si 0.736 3.264 13 H -0.205 1.205 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.189 4.189 17 C -0.026 4.026 18 N -0.324 5.324 19 C 0.385 3.615 20 O -0.409 6.409 21 C -0.403 4.403 22 S 0.437 5.563 23 C -0.275 4.275 24 N -0.183 5.183 25 C 0.027 3.973 26 C -0.122 4.122 27 C -0.195 4.195 28 C -0.197 4.197 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.221 0.779 41 H 0.154 0.846 42 H 0.123 0.877 43 H 0.116 0.884 44 H 0.120 0.880 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.935 7.164 -20.575 21.807 hybrid contribution 0.450 -0.616 0.674 1.017 sum -0.486 6.549 -19.901 20.957 Atomic orbital electron populations 1.22164 0.94794 1.02930 1.02051 1.21163 0.94076 0.97157 0.83546 0.88396 1.22147 1.01558 0.97270 0.96322 1.20192 0.96782 0.89138 0.86978 0.93010 1.42441 1.38205 1.29362 1.26360 1.19261 1.10401 1.01096 1.06349 0.91124 1.24746 0.98490 0.99452 0.98162 1.69672 1.27723 1.41260 1.19273 0.86150 0.78647 0.83165 0.78409 1.20547 1.21886 1.21870 1.22665 1.01332 1.00532 0.94420 1.22116 1.01174 0.79260 1.00081 1.48108 1.54568 1.09525 1.20154 1.16699 0.77753 0.85660 0.81404 1.90782 1.54881 1.15662 1.79546 1.25371 1.00312 1.09682 1.04888 1.84138 1.19407 1.36818 1.15915 1.28705 0.92502 1.01973 1.04320 1.65946 1.28373 1.08345 1.15653 1.19598 0.93312 0.95283 0.89069 1.20789 0.86120 1.00576 1.04764 1.22949 0.99499 1.01455 0.95618 1.22978 0.97516 0.99573 0.99658 0.91533 0.91044 0.92876 0.90301 0.91739 0.78251 0.93524 0.90480 0.92134 0.91038 0.90651 0.77877 0.84586 0.87745 0.88420 0.88024 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.02 37.16 0.34 -1.64 16 2 C 0.14 2.03 3.20 -67.82 -0.22 1.81 16 3 H 0.10 1.44 6.99 -51.93 -0.36 1.08 16 4 C -0.13 -2.18 4.99 -26.84 -0.13 -2.31 16 5 C 0.18 3.32 2.53 -67.89 -0.17 3.15 16 6 H 0.05 0.96 6.43 -51.93 -0.33 0.63 16 7 N -0.72 -17.37 5.12 -53.39 -0.27 -17.65 16 8 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 9 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 10 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 11 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 12 Si 0.91 21.83 29.55 -169.99 -5.02 16.80 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 16 C -0.15 -2.47 5.66 -26.62 -0.15 -2.62 16 17 C 0.10 1.30 5.28 -3.71 -0.02 1.28 16 18 N -0.59 -8.38 2.68 -167.00 -0.45 -8.82 16 19 C 0.60 9.04 7.31 -12.85 -0.09 8.95 16 20 O -0.53 -9.22 14.82 5.20 0.08 -9.14 16 21 C -0.28 -3.68 5.37 -37.10 -0.20 -3.88 16 22 S 0.18 1.71 20.34 -107.50 -2.19 -0.47 16 23 C 0.02 0.18 12.22 51.75 0.63 0.81 16 24 N -0.47 -5.56 9.80 -11.53 -0.11 -5.67 16 25 C 0.16 2.16 6.42 -83.89 -0.54 1.63 16 26 C -0.10 -1.29 5.76 -91.77 -0.53 -1.82 16 27 C -0.16 -1.64 10.08 -26.73 -0.27 -1.91 16 28 C -0.16 -1.76 10.23 -26.73 -0.27 -2.04 16 29 H 0.07 0.83 5.74 -51.93 -0.30 0.53 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.38 9.98 7.80 -40.82 -0.32 9.66 16 35 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 0.85 7.52 -51.93 -0.39 0.46 16 39 H 0.08 0.92 4.58 -39.77 -0.18 0.74 16 40 H 0.20 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.14 1.91 6.55 -51.93 -0.34 1.57 16 42 H 0.10 1.10 7.74 -51.93 -0.40 0.70 16 43 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -31.65 371.00 -9.93 -41.58 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -6.40 Total: 10.23 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -1.87 Total: -5.56 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: -0.11 Total: -59.03 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.08 Total: -9.14 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.19 Total: -0.47 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.65 -9.93 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044774314.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.083 kcal (2) G-P(sol) polarization free energy of solvation -31.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds