Wall clock time and date at job start Tue Mar 31 2020 19:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.70016 * 2 1 4 4 C 1.52758 * 109.43182 * 120.16590 * 2 1 3 5 5 C 1.53035 * 109.38587 * 65.42008 * 4 2 1 6 6 H 1.08998 * 109.46357 * 301.21697 * 5 4 2 7 7 N 1.46504 * 109.45150 * 181.25180 * 5 4 2 8 8 C 1.36940 * 120.00150 * 154.93841 * 7 5 4 9 9 H 1.07995 * 119.99820 * 0.02562 * 8 7 5 10 10 C 1.38803 * 120.00005 * 180.02562 * 8 7 5 11 11 N 1.31625 * 120.00458 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00126 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46940 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47222 * 119.99779 * 12 10 8 15 15 H 1.48496 * 109.47357 * 240.00132 * 12 10 8 16 16 C 1.53038 * 109.53838 * 61.24104 * 5 4 2 17 17 C 1.53184 * 109.31221 * 298.63666 * 16 5 4 18 18 N 1.46926 * 109.58311 * 239.64398 * 2 1 3 19 19 C 1.34773 * 120.63115 * 113.84951 * 18 2 1 20 20 O 1.21690 * 120.00142 * 5.32983 * 19 18 2 21 21 C 1.46678 * 120.00185 * 185.33700 * 19 18 2 22 22 S 1.76218 * 126.13010 * 41.70241 * 21 19 18 23 23 C 1.70956 * 90.31513 * 179.97438 * 22 21 19 24 24 N 1.29425 * 110.39040 * 0.02562 * 23 22 21 25 25 C 1.30943 * 117.36487 * 359.97438 * 24 23 22 26 26 C 1.50703 * 122.90600 * 180.02562 * 25 24 23 27 27 C 1.53000 * 117.49761 * 8.59902 * 26 25 24 28 28 C 1.52998 * 60.00107 * 252.51065 * 27 26 25 29 29 H 1.08996 * 109.46887 * 180.35942 * 1 2 3 30 30 H 1.09000 * 109.46784 * 300.35399 * 1 2 3 31 31 H 1.08992 * 109.46949 * 60.35740 * 1 2 3 32 32 H 1.09011 * 109.56388 * 305.38681 * 4 2 1 33 33 H 1.09006 * 109.38672 * 185.35077 * 4 2 1 34 34 H 0.97000 * 119.99828 * 334.94499 * 7 5 4 35 35 H 0.96997 * 120.00287 * 179.97438 * 11 10 8 36 36 H 1.08997 * 109.49953 * 178.68239 * 16 5 4 37 37 H 1.09006 * 109.50087 * 58.58400 * 16 5 4 38 38 H 1.09005 * 109.59021 * 294.84142 * 17 16 5 39 39 H 1.09005 * 109.70489 * 174.49166 * 17 16 5 40 40 H 1.07998 * 124.80113 * 179.97438 * 23 22 21 41 41 H 1.08996 * 115.55166 * 154.30594 * 26 25 24 42 42 H 1.09001 * 117.49702 * 359.97438 * 27 26 25 43 43 H 1.08996 * 117.50008 * 145.02100 * 27 26 25 44 44 H 1.08996 * 117.49914 * 252.51226 * 28 27 26 45 45 H 1.09001 * 117.49992 * 107.48624 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0383 -0.7239 1.2455 5 6 1.6410 -2.2000 1.1727 6 1 0.5565 -2.2810 1.0997 7 7 2.1017 -2.8893 2.3805 8 6 1.4664 -4.0259 2.8047 9 1 0.6260 -4.4142 2.2486 10 6 1.9026 -4.6787 3.9494 11 7 2.9265 -4.2051 4.6274 12 14 1.0364 -6.2294 4.5276 13 1 -0.0763 -6.5507 3.5983 14 1 2.0029 -7.3566 4.5517 15 1 0.4937 -6.0135 5.8929 16 6 2.2843 -2.8430 -0.0580 17 6 1.7740 -2.1421 -1.3209 18 7 2.0225 -0.6996 -1.1945 19 6 2.6945 -0.0319 -2.1532 20 8 2.9832 1.1391 -1.9907 21 6 3.0776 -0.7164 -3.3925 22 16 2.0768 -1.8382 -4.3119 23 6 3.3328 -2.0371 -5.4545 24 7 4.3582 -1.3184 -5.1271 25 6 4.2658 -0.5995 -4.0366 26 6 5.3828 0.2820 -3.5400 27 6 6.5886 0.4803 -4.4606 28 6 6.7173 -0.3885 -3.2078 29 1 -0.3633 -1.0276 0.0064 30 1 -0.3633 0.5193 0.8868 31 1 -0.3633 0.5082 -0.8931 32 1 1.5988 -0.2723 2.1350 33 1 3.1241 -0.6413 1.2942 34 1 2.8567 -2.5407 2.8798 35 1 3.2311 -4.6611 5.4275 36 1 2.0200 -3.8998 -0.0964 37 1 3.3678 -2.7405 0.0023 38 1 0.7043 -2.3204 -1.4310 39 1 2.3004 -2.5285 -2.1938 40 1 3.2786 -2.6730 -6.3257 41 1 5.0763 1.1263 -2.9226 42 1 6.5743 -0.0271 -5.4252 43 1 7.0756 1.4554 -4.4490 44 1 7.2890 0.0150 -2.3721 45 1 6.7874 -1.4671 -3.3484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044774314.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:50 Heat of formation + Delta-G solvation = 33.226554 kcal Electronic energy + Delta-G solvation = -27171.547236 eV Core-core repulsion = 23509.287184 eV Total energy + Delta-G solvation = -3662.260052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.81942 -40.84673 -38.87763 -37.49283 -36.26809 -34.13784 -33.51893 -31.62749 -30.95009 -28.65209 -27.25640 -25.96805 -24.54309 -24.29963 -23.46100 -23.28229 -22.40646 -20.58350 -19.58126 -19.26289 -18.87217 -17.91344 -17.61223 -16.73960 -16.67339 -16.31476 -15.73257 -15.54923 -15.50291 -15.31061 -15.21646 -14.99320 -14.79525 -14.37697 -14.05882 -13.89945 -13.42645 -13.26418 -13.02055 -12.90553 -12.81324 -12.59429 -12.45253 -12.44261 -12.13669 -12.10453 -11.98938 -11.81098 -11.70764 -11.40395 -11.28163 -11.12455 -10.92567 -10.73303 -10.39408 -9.83426 -9.66187 -8.99968 -7.91936 -5.20899 -0.74131 0.09708 0.53269 1.35868 1.49496 1.49730 1.59548 1.68744 1.97624 2.57794 2.91299 3.12319 3.35711 3.41721 3.66600 3.76057 3.83110 3.88761 3.95167 4.04458 4.05913 4.19844 4.21977 4.30856 4.43908 4.50930 4.52953 4.59895 4.70446 4.70730 4.79804 4.82182 4.99229 4.99739 5.01601 5.03882 5.14056 5.23447 5.24235 5.29993 5.49112 5.54711 5.57992 6.21646 6.29561 6.55975 6.91985 7.35603 8.10718 8.33835 9.31971 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014633 B = 0.003122 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.984991 B = 8966.855535 C = 9061.141236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.148 3.852 3 H 0.091 0.909 4 C -0.124 4.124 5 C 0.176 3.824 6 H 0.060 0.940 7 N -0.738 5.738 8 C -0.232 4.232 9 H 0.082 0.918 10 C -0.078 4.078 11 N -0.972 5.972 12 Si 0.969 3.031 13 H -0.261 1.261 14 H -0.298 1.298 15 H -0.297 1.297 16 C -0.139 4.139 17 C 0.106 3.894 18 N -0.592 5.592 19 C 0.598 3.402 20 O -0.563 6.563 21 C -0.321 4.321 22 S 0.230 5.770 23 C 0.037 3.963 24 N -0.494 5.494 25 C 0.160 3.840 26 C -0.126 4.126 27 C -0.139 4.139 28 C -0.158 4.158 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.369 0.631 35 H 0.249 0.751 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.247 0.753 41 H 0.115 0.885 42 H 0.106 0.894 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.961 6.182 -23.067 23.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.044 3.956 3 H 0.109 0.891 4 C -0.163 4.163 5 C 0.068 3.932 6 H 0.078 0.922 7 N -0.377 5.377 8 C -0.364 4.364 9 H 0.100 0.900 10 C -0.270 4.270 11 N -0.624 5.624 12 Si 0.799 3.201 13 H -0.185 1.185 14 H -0.225 1.225 15 H -0.225 1.225 16 C -0.180 4.180 17 C -0.017 4.017 18 N -0.324 5.324 19 C 0.386 3.614 20 O -0.444 6.444 21 C -0.445 4.445 22 S 0.487 5.513 23 C -0.257 4.257 24 N -0.208 5.208 25 C 0.023 3.977 26 C -0.147 4.147 27 C -0.176 4.176 28 C -0.196 4.196 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.201 0.799 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.114 0.886 39 H 0.108 0.892 40 H 0.263 0.737 41 H 0.133 0.867 42 H 0.124 0.876 43 H 0.132 0.868 44 H 0.126 0.874 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.579 6.152 -23.274 24.211 hybrid contribution 0.951 -0.271 1.382 1.700 sum -1.628 5.881 -21.892 22.726 Atomic orbital electron populations 1.22110 0.92693 1.03278 1.03117 1.21089 0.95582 0.96348 0.82533 0.89125 1.22012 1.00414 0.96187 0.97676 1.20415 0.97149 0.89927 0.85693 0.92172 1.42679 1.37725 1.29253 1.27995 1.19675 1.09853 1.01150 1.05690 0.90023 1.25538 0.99687 1.02780 0.98974 1.69836 1.29791 1.42886 1.19852 0.85126 0.77855 0.79394 0.77733 1.18521 1.22509 1.22491 1.22448 0.99893 1.00384 0.95239 1.22105 1.02634 0.78338 0.98630 1.48142 1.54474 1.09787 1.19955 1.16976 0.76992 0.85403 0.82070 1.90753 1.55994 1.17200 1.80407 1.25285 1.01852 1.12182 1.05151 1.83870 1.18004 1.34737 1.14734 1.29494 0.91239 1.00389 1.04606 1.66001 1.29687 1.09529 1.15547 1.19718 0.93352 0.95248 0.89430 1.20761 0.87079 1.00723 1.06106 1.22996 0.97570 1.01957 0.95101 1.22999 0.96597 0.99463 1.00504 0.91403 0.90155 0.91723 0.90465 0.93585 0.79948 0.94254 0.91055 0.94220 0.88583 0.89158 0.73668 0.86683 0.87582 0.86844 0.87396 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.02 71.98 0.65 -2.82 16 2 C 0.15 4.10 3.20 44.83 0.14 4.24 16 3 H 0.09 2.70 6.99 -2.39 -0.02 2.68 16 4 C -0.12 -4.07 4.99 30.53 0.15 -3.92 16 5 C 0.18 6.47 2.53 45.01 0.11 6.58 16 6 H 0.06 2.13 6.43 -2.39 -0.02 2.12 16 7 N -0.74 -35.84 5.12 -322.83 -1.65 -37.49 16 8 C -0.23 -12.28 9.93 84.03 0.83 -11.44 16 9 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 10 C -0.08 -4.36 5.50 84.86 0.47 -3.90 16 11 N -0.97 -59.06 13.06 21.65 0.28 -58.78 16 12 Si 0.97 44.97 29.55 68.60 2.03 47.00 16 13 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 14 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 15 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 16 C -0.14 -4.53 5.66 30.67 0.17 -4.35 16 17 C 0.11 2.62 5.28 86.36 0.46 3.08 16 18 N -0.59 -16.29 2.68 -800.50 -2.15 -18.44 16 19 C 0.60 17.97 7.31 86.45 0.63 18.60 16 20 O -0.56 -20.09 14.82 -4.32 -0.06 -20.15 16 21 C -0.32 -8.15 5.37 23.88 0.13 -8.03 16 22 S 0.23 3.65 20.34 -56.49 -1.15 2.50 16 23 C 0.04 0.53 12.22 130.60 1.60 2.13 16 24 N -0.49 -10.68 9.80 -190.40 -1.87 -12.55 16 25 C 0.16 4.11 6.42 42.09 0.27 4.38 16 26 C -0.13 -3.24 5.76 -11.54 -0.07 -3.30 16 27 C -0.14 -2.78 10.08 30.59 0.31 -2.47 16 28 C -0.16 -3.48 10.23 30.59 0.31 -3.16 16 29 H 0.07 1.51 5.74 -2.39 -0.01 1.50 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 33 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.37 19.85 7.80 -92.71 -0.72 19.13 16 35 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 36 H 0.07 2.41 8.14 -2.39 -0.02 2.40 16 37 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.10 1.96 7.52 -2.38 -0.02 1.94 16 39 H 0.09 2.00 4.58 -10.11 -0.05 1.95 16 40 H 0.25 1.15 8.06 -2.91 -0.02 1.13 16 41 H 0.12 3.41 6.55 -2.39 -0.02 3.40 16 42 H 0.11 2.10 7.74 -2.39 -0.02 2.08 16 43 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -70.19 371.00 1.86 -68.32 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: 0.26 Total: 33.97 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 6.17 Total: -4.38 kcal Atomic # 7 Polarization: -121.87 SS G_CDS: -5.39 Total: -127.26 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.06 Total: -20.15 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -1.15 Total: 2.50 kcal Total: -70.19 1.86 -68.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044774314.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.551 kcal (2) G-P(sol) polarization free energy of solvation -70.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds