Wall clock time and date at job start Tue Mar 31 2020 19:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.70829 * 2 1 4 4 C 1.53626 * 109.66269 * 120.60046 * 2 1 3 5 5 C 1.53035 * 109.24258 * 174.54754 * 4 2 1 6 6 H 1.08997 * 109.45090 * 58.52191 * 5 4 2 7 7 N 1.46499 * 109.46215 * 178.48734 * 5 4 2 8 8 C 1.36941 * 120.00379 * 205.06994 * 7 5 4 9 9 H 1.07997 * 119.99752 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99818 * 180.02562 * 8 7 5 11 11 N 1.31615 * 120.00141 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99670 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47289 * 89.99444 * 12 10 8 14 14 H 1.48502 * 109.47098 * 209.99720 * 12 10 8 15 15 H 1.48505 * 109.47180 * 329.99867 * 12 10 8 16 16 C 1.53039 * 109.54008 * 298.50535 * 5 4 2 17 17 C 1.53194 * 109.31027 * 61.36763 * 16 5 4 18 18 N 1.46927 * 108.77444 * 305.36530 * 17 16 5 19 19 C 1.34776 * 120.63287 * 233.58802 * 18 17 16 20 20 O 1.21682 * 120.00416 * 183.75373 * 19 18 17 21 21 C 1.46684 * 119.99624 * 3.74678 * 19 18 17 22 22 S 1.76210 * 126.13465 * 309.12941 * 21 19 18 23 23 C 1.70949 * 90.31750 * 180.02562 * 22 21 19 24 24 N 1.29437 * 110.38828 * 0.02562 * 23 22 21 25 25 C 1.30942 * 117.36244 * 0.02562 * 24 23 22 26 26 C 1.50694 * 122.89798 * 179.97438 * 25 24 23 27 27 C 1.53004 * 117.50613 * 8.74718 * 26 25 24 28 28 C 1.52997 * 117.50336 * 300.08369 * 26 25 24 29 29 H 1.08997 * 109.47792 * 167.32503 * 1 2 3 30 30 H 1.09000 * 109.47366 * 287.33720 * 1 2 3 31 31 H 1.09000 * 109.46985 * 47.33049 * 1 2 3 32 32 H 1.08997 * 109.63331 * 54.55171 * 4 2 1 33 33 H 1.08998 * 109.45576 * 294.43154 * 4 2 1 34 34 H 0.97000 * 119.99830 * 25.06928 * 7 5 4 35 35 H 0.97001 * 119.99606 * 180.02562 * 11 10 8 36 36 H 1.08994 * 109.49890 * 301.41954 * 16 5 4 37 37 H 1.08995 * 109.52800 * 181.32959 * 16 5 4 38 38 H 1.08998 * 109.58545 * 185.57853 * 17 16 5 39 39 H 1.08999 * 109.70539 * 65.22241 * 17 16 5 40 40 H 1.08000 * 124.80886 * 179.73328 * 23 22 21 41 41 H 1.09010 * 115.54890 * 154.41222 * 26 25 24 42 42 H 1.09000 * 117.49024 * 359.97438 * 27 26 25 43 43 H 1.08991 * 117.50128 * 145.01726 * 27 26 25 44 44 H 1.08997 * 117.50343 * 214.98433 * 28 26 25 45 45 H 1.09006 * 117.49608 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0469 -0.7364 1.2452 5 6 3.5710 -0.8500 1.1676 6 1 4.0063 0.1469 1.0989 7 7 4.0725 -1.5197 2.3702 8 6 5.3565 -1.2988 2.7920 9 1 5.9995 -0.6312 2.2378 10 6 5.8317 -1.9338 3.9312 11 7 5.0481 -2.7478 4.6062 12 14 7.5833 -1.6330 4.5062 13 1 7.6063 -0.4795 5.4410 14 1 8.0911 -2.8434 5.2008 15 1 8.4453 -1.3370 3.3336 16 6 3.9614 -1.6630 -0.0689 17 6 3.4657 -0.9421 -1.3264 18 7 2.0225 -0.6995 -1.1945 19 6 1.1674 -1.1061 -2.1537 20 8 -0.0166 -0.8395 -2.0660 21 6 1.6641 -1.8698 -3.3033 22 16 3.0204 -1.4268 -4.3373 23 6 2.7832 -2.8398 -5.2698 24 7 1.7855 -3.5228 -4.8078 25 6 1.1602 -3.0427 -3.7623 26 6 -0.0165 -3.7341 -3.1235 27 6 -0.3547 -5.1457 -3.6073 28 6 -1.2547 -3.9684 -3.9911 29 1 -0.3634 -1.0025 -0.2255 30 1 -0.3634 0.3062 0.9810 31 1 -0.3633 0.6965 -0.7556 32 1 1.6094 -1.7338 1.2888 33 1 1.7688 -0.1779 2.1389 34 1 3.4950 -2.1196 2.8677 35 1 5.3801 -3.1913 5.4025 36 1 3.5060 -2.6516 -0.0130 37 1 5.0459 -1.7638 -0.1112 38 1 3.6532 -1.5637 -2.2019 39 1 3.9875 0.0087 -1.4348 40 1 3.3784 -3.1204 -6.1263 41 1 -0.1760 -3.5122 -2.0682 42 1 0.2738 -5.5740 -4.3882 43 1 -0.7370 -5.8522 -2.8707 44 1 -2.2288 -3.9010 -3.5067 45 1 -1.2183 -3.6220 -5.0240 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044774315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:53 Heat of formation + Delta-G solvation = 48.976413 kcal Electronic energy + Delta-G solvation = -27236.155411 eV Core-core repulsion = 23574.578324 eV Total energy + Delta-G solvation = -3661.577086 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.89667 -40.84344 -38.70405 -37.47776 -36.20180 -34.27097 -33.71798 -31.61647 -30.88067 -28.45709 -27.14051 -26.02605 -24.55697 -24.28006 -23.44317 -23.24893 -21.98218 -21.17999 -19.58514 -19.16429 -19.00311 -17.90126 -17.31880 -16.73264 -16.71578 -16.52334 -15.80728 -15.61896 -15.49379 -15.37131 -15.14548 -14.92776 -14.72726 -14.37338 -14.07882 -13.55305 -13.43052 -13.36448 -13.09732 -12.88499 -12.77347 -12.65220 -12.51579 -12.43236 -12.17482 -12.05983 -12.01665 -11.80420 -11.71455 -11.41686 -11.37298 -10.93952 -10.87770 -10.50136 -10.18347 -9.75484 -9.63114 -9.00952 -7.92627 -5.21672 -0.68447 0.09068 0.53570 1.40815 1.49035 1.50178 1.58346 1.66690 1.99602 2.57237 2.93325 3.13390 3.38080 3.41098 3.67516 3.70045 3.82560 3.88452 3.98534 4.04516 4.08090 4.19862 4.20213 4.28703 4.44501 4.52073 4.57210 4.66688 4.69917 4.72229 4.80372 4.82085 4.96076 4.99607 5.02671 5.11050 5.11911 5.23192 5.23988 5.38587 5.46522 5.53836 5.63861 6.24889 6.28865 6.57288 6.98675 7.34926 8.09852 8.33141 9.31009 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014532 B = 0.003178 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.373850 B = 8807.979037 C = 9176.680243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.153 3.847 3 H 0.092 0.908 4 C -0.123 4.123 5 C 0.174 3.826 6 H 0.054 0.946 7 N -0.737 5.737 8 C -0.235 4.235 9 H 0.081 0.919 10 C -0.077 4.077 11 N -0.972 5.972 12 Si 0.970 3.030 13 H -0.289 1.289 14 H -0.300 1.300 15 H -0.266 1.266 16 C -0.137 4.137 17 C 0.106 3.894 18 N -0.595 5.595 19 C 0.595 3.405 20 O -0.540 6.540 21 C -0.316 4.316 22 S 0.222 5.778 23 C 0.035 3.965 24 N -0.493 5.493 25 C 0.154 3.846 26 C -0.117 4.117 27 C -0.148 4.148 28 C -0.145 4.145 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.370 0.630 35 H 0.249 0.751 36 H 0.040 0.960 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.246 0.754 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.779 2.690 -22.770 23.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.050 3.950 3 H 0.110 0.890 4 C -0.162 4.162 5 C 0.066 3.934 6 H 0.072 0.928 7 N -0.376 5.376 8 C -0.367 4.367 9 H 0.099 0.901 10 C -0.269 4.269 11 N -0.623 5.623 12 Si 0.799 3.201 13 H -0.216 1.216 14 H -0.227 1.227 15 H -0.191 1.191 16 C -0.178 4.178 17 C -0.017 4.017 18 N -0.328 5.328 19 C 0.381 3.619 20 O -0.419 6.419 21 C -0.440 4.440 22 S 0.478 5.522 23 C -0.259 4.259 24 N -0.207 5.207 25 C 0.017 3.983 26 C -0.138 4.138 27 C -0.186 4.186 28 C -0.182 4.182 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.201 0.799 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.262 0.738 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.563 3.277 -23.082 24.219 hybrid contribution 0.143 -0.878 1.435 1.689 sum -6.420 2.398 -21.646 22.705 Atomic orbital electron populations 1.22070 0.92436 1.03064 1.00821 1.21429 0.95664 0.95523 0.82335 0.88987 1.22230 0.95799 1.00471 0.97693 1.20400 0.92262 0.94835 0.85913 0.92827 1.42651 1.12322 1.54151 1.28495 1.19641 0.90123 1.20787 1.06156 0.90143 1.25542 1.01991 1.00384 0.98967 1.69826 1.37297 1.34968 1.20186 0.85186 0.80291 0.76355 0.78222 1.21595 1.22691 1.19063 1.22427 1.01134 0.99033 0.95214 1.22120 0.78994 1.01905 0.98687 1.48159 1.07898 1.56870 1.19832 1.16978 0.85369 0.78311 0.81235 1.90860 1.16747 1.56879 1.77463 1.25446 1.07139 1.04080 1.07344 1.83866 1.24462 1.24458 1.19440 1.29437 0.97558 0.94480 1.04465 1.65970 1.09087 1.33588 1.12006 1.19667 0.96269 0.91018 0.91369 1.20510 0.93955 1.00923 0.98386 1.23035 1.02310 0.89683 1.03527 1.22957 0.93843 1.01674 0.99746 0.92562 0.92311 0.91826 0.93234 0.90620 0.79865 0.94207 0.94129 0.91232 0.89143 0.88636 0.73815 0.87936 0.87742 0.87198 0.87163 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 7.67 71.98 0.55 -2.92 16 2 C 0.15 4.19 3.51 45.12 0.16 4.35 16 3 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 4 C -0.12 -4.00 4.84 30.82 0.15 -3.85 16 5 C 0.17 6.46 2.73 45.02 0.12 6.58 16 6 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 7 N -0.74 -36.05 5.12 -322.83 -1.65 -37.70 16 8 C -0.24 -12.57 9.93 84.03 0.83 -11.73 16 9 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 10 C -0.08 -4.32 5.50 84.86 0.47 -3.86 16 11 N -0.97 -59.09 13.06 21.65 0.28 -58.81 16 12 Si 0.97 45.14 29.55 68.60 2.03 47.16 16 13 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 14 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 15 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 16 C -0.14 -4.49 5.66 30.67 0.17 -4.32 16 17 C 0.11 2.64 5.98 86.36 0.52 3.15 16 18 N -0.60 -16.17 2.97 -798.88 -2.37 -18.54 16 19 C 0.59 17.14 6.80 86.45 0.59 17.73 16 20 O -0.54 -17.75 12.16 -4.29 -0.05 -17.80 16 21 C -0.32 -7.94 5.29 23.88 0.13 -7.82 16 22 S 0.22 3.60 20.54 -56.49 -1.16 2.44 16 23 C 0.04 0.52 12.22 130.60 1.60 2.12 16 24 N -0.49 -10.82 9.81 -190.41 -1.87 -12.69 16 25 C 0.15 3.92 6.41 42.09 0.27 4.19 16 26 C -0.12 -2.95 5.53 -11.54 -0.06 -3.01 16 27 C -0.15 -3.01 10.09 30.62 0.31 -2.70 16 28 C -0.14 -2.98 10.24 30.62 0.31 -2.67 16 29 H 0.06 1.76 6.32 -2.39 -0.02 1.75 16 30 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 31 H 0.06 1.77 7.11 -2.39 -0.02 1.76 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.37 19.91 7.80 -92.71 -0.72 19.19 16 35 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.09 2.01 4.37 -10.54 -0.05 1.96 16 39 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.25 1.32 8.06 -2.91 -0.02 1.29 16 41 H 0.10 2.92 7.74 -2.38 -0.02 2.90 16 42 H 0.10 2.14 7.74 -2.39 -0.02 2.12 16 43 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -68.80 371.64 1.57 -67.23 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: 0.25 Total: 33.45 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: 6.11 Total: -4.75 kcal Atomic # 7 Polarization: -122.12 SS G_CDS: -5.61 Total: -127.73 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.05 Total: -17.80 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -1.16 Total: 2.44 kcal Total: -68.80 1.57 -67.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044774315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.201 kcal (2) G-P(sol) polarization free energy of solvation -68.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds