Wall clock time and date at job start Tue Mar 31 2020 19:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08997 * 109.58529 * 2 1 4 4 C 1.53192 * 109.58597 * 239.72024 * 2 1 3 5 5 C 1.53039 * 109.31054 * 294.70529 * 4 2 1 6 6 H 1.09006 * 109.45326 * 58.64830 * 5 4 2 7 7 N 1.46503 * 109.46254 * 178.61410 * 5 4 2 8 8 C 1.36934 * 120.00174 * 205.06468 * 7 5 4 9 9 H 1.08002 * 120.00128 * 0.02562 * 8 7 5 10 10 C 1.38808 * 119.99800 * 179.97438 * 8 7 5 11 11 N 1.31625 * 120.00346 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 120.00103 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47013 * 60.00177 * 12 10 8 14 14 H 1.48497 * 109.47461 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47089 * 300.00162 * 12 10 8 16 16 C 1.53041 * 109.54075 * 298.63710 * 5 4 2 17 17 C 1.53193 * 109.31490 * 61.36254 * 16 5 4 18 18 N 1.46935 * 108.89101 * 305.30042 * 17 16 5 19 19 C 1.34771 * 120.62746 * 233.67032 * 18 17 16 20 20 O 1.21691 * 120.00290 * 355.62233 * 19 18 17 21 21 C 1.46681 * 120.00187 * 175.62196 * 19 18 17 22 22 S 1.76209 * 126.13120 * 48.30355 * 21 19 18 23 23 C 1.70952 * 90.31583 * 179.97438 * 22 21 19 24 24 N 1.29426 * 110.39064 * 0.35225 * 23 22 21 25 25 C 1.30940 * 117.36352 * 359.72156 * 24 23 22 26 26 C 1.50700 * 122.90456 * 180.02562 * 25 24 23 27 27 C 1.52995 * 117.50088 * 8.74640 * 26 25 24 28 28 C 1.53002 * 117.49665 * 300.08253 * 26 25 24 29 29 H 1.08997 * 109.47108 * 180.28164 * 1 2 3 30 30 H 1.09000 * 109.47060 * 300.28255 * 1 2 3 31 31 H 1.09001 * 109.47006 * 60.27786 * 1 2 3 32 32 H 1.09001 * 109.49694 * 174.75612 * 4 2 1 33 33 H 1.08999 * 109.52580 * 54.66566 * 4 2 1 34 34 H 0.96999 * 119.99226 * 25.06970 * 7 5 4 35 35 H 0.96997 * 120.00156 * 179.97438 * 11 10 8 36 36 H 1.09001 * 109.49331 * 301.41647 * 16 5 4 37 37 H 1.09000 * 109.50215 * 181.31832 * 16 5 4 38 38 H 1.09001 * 109.58188 * 65.15273 * 17 16 5 39 39 H 1.08991 * 109.58845 * 185.43994 * 17 16 5 40 40 H 1.08001 * 124.80422 * 180.02562 * 23 22 21 41 41 H 1.09004 * 115.54660 * 154.41829 * 26 25 24 42 42 H 1.09002 * 117.49637 * 359.97438 * 27 26 25 43 43 H 1.09000 * 117.50462 * 145.02379 * 27 26 25 44 44 H 1.09004 * 117.49624 * 214.97763 * 28 26 25 45 45 H 1.08999 * 117.49903 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7277 -1.2464 5 6 1.6446 -2.2033 -1.1713 6 1 0.5598 -2.2827 -1.0991 7 7 2.1054 -2.8956 -2.3774 8 6 1.4690 -4.0320 -2.7999 9 1 0.6270 -4.4178 -2.2443 10 6 1.9053 -4.6876 -3.9430 11 7 2.9311 -4.2172 -4.6205 12 14 1.0367 -6.2375 -4.5199 13 1 -0.3879 -5.9298 -4.8045 14 1 1.6909 -6.7415 -5.7541 15 1 1.1169 -7.2738 -3.4593 16 6 2.2858 -2.8449 0.0613 17 6 1.7751 -2.1411 1.3225 18 7 2.0258 -0.6988 1.1970 19 6 2.6975 -0.0325 2.1568 20 8 3.0332 -0.6075 3.1754 21 6 3.0239 1.3857 1.9737 22 16 1.9113 2.6493 1.4537 23 6 3.1642 3.8078 1.5558 24 7 4.2675 3.2467 1.9341 25 6 4.2383 1.9586 2.1676 26 6 5.4489 1.1799 2.6138 27 6 6.7003 1.9748 2.9920 28 6 6.6665 1.1749 1.6872 29 1 -0.3633 -1.0276 0.0051 30 1 -0.3633 0.5182 0.8874 31 1 -0.3633 0.5095 -0.8925 32 1 3.1296 -0.6465 -1.2935 33 1 1.6060 -0.2775 -2.1374 34 1 2.8613 -2.5488 -2.8766 35 1 3.2362 -4.6755 -5.4191 36 1 3.3695 -2.7437 0.0018 37 1 2.0203 -3.9013 0.1013 38 1 0.7051 -2.3179 1.4316 39 1 2.3004 -2.5287 2.1953 40 1 3.0524 4.8582 1.3310 41 1 5.2413 0.2700 3.1770 42 1 6.6480 3.0610 2.9177 43 1 7.3162 1.5877 3.8037 44 1 7.2602 0.2618 1.6413 45 1 6.5917 1.7344 0.7548 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044774316.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:57 Heat of formation + Delta-G solvation = 53.125078 kcal Electronic energy + Delta-G solvation = -27271.349425 eV Core-core repulsion = 23609.952238 eV Total energy + Delta-G solvation = -3661.397187 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.79052 -39.78459 -37.63931 -36.62095 -34.67889 -32.26377 -32.07400 -30.90228 -29.32817 -27.49050 -26.29504 -24.31031 -23.46168 -22.81356 -22.44231 -22.23511 -21.23184 -19.65431 -18.38231 -18.17952 -17.24092 -16.81577 -16.44125 -15.52860 -15.28231 -15.03038 -14.78436 -14.64727 -14.38331 -14.05373 -13.77591 -13.62424 -13.34827 -12.99271 -12.91599 -12.64561 -12.55162 -11.90479 -11.73143 -11.62503 -11.53702 -11.48847 -10.95861 -10.94843 -10.91349 -10.80545 -10.51383 -10.46973 -10.30603 -10.24750 -9.92012 -9.85609 -9.73418 -9.38549 -8.92659 -8.89489 -8.58445 -7.01057 -5.80373 -3.09797 0.11908 0.89261 1.30496 2.27336 2.73928 3.05019 3.41166 3.46006 3.46802 3.75346 3.93171 4.34698 4.54461 4.57193 4.70814 4.77094 4.88364 5.00911 5.05600 5.14968 5.29686 5.34343 5.47070 5.54695 5.55409 5.63783 5.66704 5.69295 5.73709 5.81411 5.86031 5.91789 6.02380 6.08485 6.14058 6.17136 6.28130 6.41055 6.51302 6.52825 6.86260 7.01153 7.31151 7.41961 7.65173 8.05073 8.37710 9.49017 10.05828 10.40498 11.42032 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016514 B = 0.003145 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.129837 B = 8900.931237 C = 9380.528672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.127 3.873 3 H 0.086 0.914 4 C -0.132 4.132 5 C 0.180 3.820 6 H 0.052 0.948 7 N -0.723 5.723 8 C -0.241 4.241 9 H 0.070 0.930 10 C -0.011 4.011 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.150 4.150 17 C 0.114 3.886 18 N -0.590 5.590 19 C 0.598 3.402 20 O -0.530 6.530 21 C -0.276 4.276 22 S 0.180 5.820 23 C 0.019 3.981 24 N -0.468 5.468 25 C 0.162 3.838 26 C -0.102 4.102 27 C -0.157 4.157 28 C -0.159 4.159 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.383 0.617 35 H 0.256 0.744 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.205 0.795 41 H 0.133 0.867 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.102 0.898 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.640 17.219 13.395 21.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.022 3.978 3 H 0.103 0.897 4 C -0.171 4.171 5 C 0.069 3.931 6 H 0.070 0.930 7 N -0.364 5.364 8 C -0.372 4.372 9 H 0.088 0.912 10 C -0.208 4.208 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.192 4.192 17 C -0.008 4.008 18 N -0.322 5.322 19 C 0.384 3.616 20 O -0.408 6.408 21 C -0.400 4.400 22 S 0.435 5.565 23 C -0.277 4.277 24 N -0.181 5.181 25 C 0.025 3.975 26 C -0.123 4.123 27 C -0.195 4.195 28 C -0.197 4.197 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.217 0.783 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.221 0.779 41 H 0.151 0.849 42 H 0.123 0.877 43 H 0.116 0.884 44 H 0.120 0.880 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.213 17.199 13.619 21.971 hybrid contribution 0.464 -1.072 -0.413 1.239 sum -0.749 16.127 13.205 20.857 Atomic orbital electron populations 1.22196 0.94264 1.03574 1.02123 1.21685 0.94871 0.96219 0.85015 0.89681 1.22201 1.01420 0.97589 0.95912 1.20194 0.96834 0.88846 0.87194 0.93019 1.42410 1.38073 1.29322 1.26557 1.19175 1.10371 1.01196 1.06469 0.91220 1.24738 0.98456 0.99422 0.98151 1.69650 1.27583 1.41368 1.19433 0.86291 0.78808 0.83274 0.77938 1.21261 1.21710 1.21252 1.22688 1.01304 1.00593 0.94568 1.21759 1.00832 0.78022 1.00226 1.48192 1.54181 1.09897 1.19917 1.16700 0.77957 0.83727 0.83250 1.90802 1.54093 1.68338 1.27549 1.25379 0.98397 0.99633 1.16620 1.84121 1.15203 0.98073 1.59066 1.28713 0.91565 1.05364 1.02024 1.65937 1.27575 1.09633 1.14966 1.19561 0.93368 0.87934 0.96607 1.20736 0.85339 1.00790 1.05398 1.22961 0.98402 0.99557 0.98534 1.22999 0.98997 1.02720 0.94945 0.91016 0.92770 0.90770 0.91746 0.90294 0.78295 0.93434 0.92175 0.90460 0.91443 0.89478 0.77867 0.84913 0.87709 0.88404 0.87990 0.88559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.03 37.16 0.34 -1.47 16 2 C 0.13 1.62 2.74 -67.45 -0.19 1.43 16 3 H 0.09 1.00 4.20 -34.77 -0.15 0.85 16 4 C -0.13 -2.05 5.02 -26.61 -0.13 -2.18 16 5 C 0.18 3.32 2.53 -67.89 -0.17 3.15 16 6 H 0.05 0.96 6.45 -51.93 -0.33 0.62 16 7 N -0.72 -17.35 5.12 -53.38 -0.27 -17.62 16 8 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 9 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 10 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 11 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 12 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 C -0.15 -2.61 5.66 -26.61 -0.15 -2.76 16 17 C 0.11 1.68 6.00 -3.71 -0.02 1.66 16 18 N -0.59 -8.41 2.70 -166.54 -0.45 -8.86 16 19 C 0.60 9.11 7.21 -12.85 -0.09 9.02 16 20 O -0.53 -9.39 15.20 5.20 0.08 -9.32 16 21 C -0.28 -3.65 5.40 -37.09 -0.20 -3.85 16 22 S 0.18 1.67 20.32 -107.50 -2.18 -0.52 16 23 C 0.02 0.16 12.22 51.75 0.63 0.80 16 24 N -0.47 -5.50 9.81 -11.53 -0.11 -5.61 16 25 C 0.16 2.13 6.41 -83.89 -0.54 1.59 16 26 C -0.10 -1.30 5.77 -91.77 -0.53 -1.83 16 27 C -0.16 -1.64 10.09 -26.69 -0.27 -1.91 16 28 C -0.16 -1.76 10.24 -26.69 -0.27 -2.04 16 29 H 0.07 0.86 5.74 -51.93 -0.30 0.57 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.38 9.91 7.80 -40.82 -0.32 9.59 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 38 H 0.07 0.91 7.49 -51.93 -0.39 0.52 16 39 H 0.09 1.33 7.03 -51.93 -0.36 0.97 16 40 H 0.20 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.13 1.87 6.81 -51.93 -0.35 1.51 16 42 H 0.10 1.10 7.74 -51.93 -0.40 0.70 16 43 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 371.56 15.07 5.60 5.60 Total: -1.00 -31.83 371.56 -9.86 -41.70 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -6.38 Total: 10.01 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -1.84 Total: -5.40 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.11 Total: -58.98 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.32 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.18 Total: -0.52 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.83 -9.86 -41.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044774316.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.824 kcal (2) G-P(sol) polarization free energy of solvation -31.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds