Wall clock time and date at job start Tue Mar 31 2020 19:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.70009 * 2 1 4 4 C 1.53197 * 109.58220 * 239.63637 * 2 1 3 5 5 C 1.53043 * 109.30946 * 185.56398 * 4 2 1 6 6 H 1.08997 * 109.45973 * 301.37503 * 5 4 2 7 7 N 1.46494 * 109.46061 * 181.39997 * 5 4 2 8 8 C 1.36935 * 120.00415 * 154.97571 * 7 5 4 9 9 H 1.08006 * 119.99590 * 359.97438 * 8 7 5 10 10 C 1.38814 * 120.00513 * 179.97438 * 8 7 5 11 11 N 1.31619 * 119.99489 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00188 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46799 * 60.00088 * 12 10 8 14 14 H 1.48499 * 109.47091 * 300.00254 * 12 10 8 15 15 H 1.48493 * 109.47234 * 179.97438 * 12 10 8 16 16 C 1.53046 * 109.52555 * 61.38434 * 5 4 2 17 17 C 1.53192 * 109.31057 * 298.62792 * 16 5 4 18 18 N 1.46920 * 109.58471 * 120.36217 * 2 1 3 19 19 C 1.34781 * 120.63444 * 353.36950 * 18 2 1 20 20 O 1.21686 * 119.99361 * 355.32862 * 19 18 2 21 21 C 1.46674 * 119.99932 * 175.32168 * 19 18 2 22 22 S 1.76212 * 126.13166 * 50.06062 * 21 19 18 23 23 C 1.70957 * 90.31443 * 179.91751 * 22 21 19 24 24 N 1.29430 * 110.39064 * 0.34553 * 23 22 21 25 25 C 1.30938 * 117.36220 * 359.72890 * 24 23 22 26 26 C 1.50698 * 122.90586 * 180.02562 * 25 24 23 27 27 C 1.53008 * 117.49837 * 8.74038 * 26 25 24 28 28 C 1.53001 * 117.49443 * 300.08437 * 26 25 24 29 29 H 1.08997 * 109.47024 * 307.22306 * 1 2 3 30 30 H 1.09001 * 109.47355 * 67.22199 * 1 2 3 31 31 H 1.09005 * 109.47475 * 187.22255 * 1 2 3 32 32 H 1.08992 * 109.48898 * 65.62162 * 4 2 1 33 33 H 1.08998 * 109.50578 * 305.52133 * 4 2 1 34 34 H 0.97007 * 119.99674 * 334.97379 * 7 5 4 35 35 H 0.96995 * 120.00320 * 359.97438 * 11 10 8 36 36 H 1.09000 * 109.49551 * 58.58236 * 16 5 4 37 37 H 1.08998 * 109.49394 * 178.67492 * 16 5 4 38 38 H 1.09007 * 109.58131 * 174.42579 * 17 16 5 39 39 H 1.08994 * 109.58773 * 294.70350 * 17 16 5 40 40 H 1.08004 * 124.80234 * 180.02562 * 23 22 21 41 41 H 1.09000 * 115.55510 * 154.41246 * 26 25 24 42 42 H 1.09001 * 117.49212 * 0.02562 * 27 26 25 43 43 H 1.08989 * 117.50316 * 145.02083 * 27 26 25 44 44 H 1.09005 * 117.49876 * 214.97569 * 28 26 25 45 45 H 1.08995 * 117.50340 * 359.97167 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0434 -0.7296 -1.2454 5 6 3.5674 -0.8479 -1.1703 6 1 4.0059 0.1475 -1.0992 7 7 4.0651 -1.5155 -2.3755 8 6 5.3494 -1.2979 -2.7981 9 1 5.9952 -0.6337 -2.2429 10 6 5.8211 -1.9309 -3.9398 11 7 5.0342 -2.7407 -4.6160 12 14 7.5728 -1.6335 -4.5166 13 1 8.5217 -2.0547 -3.4547 14 1 7.7608 -0.1887 -4.8037 15 1 7.8286 -2.4210 -5.7492 16 6 3.9568 -1.6658 0.0633 17 6 3.4650 -0.9470 1.3236 18 7 2.0225 -0.6997 1.1944 19 6 1.1674 -1.1064 2.1535 20 8 -0.0131 -0.8210 2.0769 21 6 1.6597 -1.8929 3.2894 22 16 3.0413 -1.4946 4.3081 23 6 2.7791 -2.9085 5.2327 24 7 1.7621 -3.5649 4.7744 25 6 1.1366 -3.0605 3.7406 26 6 -0.0614 -3.7196 3.1071 27 6 -0.6744 -4.9189 3.8332 28 6 0.1238 -5.1303 2.5442 29 1 -0.3633 0.6216 0.8183 30 1 -0.3634 0.3979 -0.9475 31 1 -0.3634 -1.0195 0.1292 32 1 1.7657 -0.1671 -2.1367 33 1 1.6030 -1.7256 -1.2912 34 1 3.4849 -2.1118 -2.8743 35 1 4.1247 -2.8955 -4.3164 36 1 3.4983 -2.6529 0.0050 37 1 5.0411 -1.7696 0.1035 38 1 3.6518 -1.5719 2.1970 39 1 3.9920 0.0007 1.4330 40 1 3.3804 -3.2136 6.0764 41 1 -0.7403 -3.0515 2.5772 42 1 -0.2112 -5.2307 4.7694 43 1 -1.7562 -5.0398 3.7808 44 1 -0.4336 -5.3902 1.6442 45 1 1.1121 -5.5814 2.6317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044774317.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:00 Heat of formation + Delta-G solvation = 66.638800 kcal Electronic energy + Delta-G solvation = -27352.212873 eV Core-core repulsion = 23691.401685 eV Total energy + Delta-G solvation = -3660.811188 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.91055 -39.89587 -37.47510 -36.64703 -34.79700 -33.16130 -32.12981 -30.60781 -29.08834 -27.10980 -26.28344 -24.18864 -23.40799 -23.09572 -22.47864 -22.36117 -20.84339 -19.95907 -18.58441 -18.22119 -17.33428 -16.88146 -16.39323 -15.72466 -15.54142 -15.01365 -14.89394 -14.63901 -14.40916 -14.07131 -13.84656 -13.59574 -13.48184 -13.22384 -12.91409 -12.58684 -12.25704 -12.18102 -11.82752 -11.65318 -11.61668 -11.51988 -10.99529 -10.89917 -10.88243 -10.62836 -10.54598 -10.52579 -10.17833 -10.07333 -10.00576 -9.62571 -9.29331 -9.13887 -8.98196 -8.87456 -8.56051 -7.09619 -6.14171 -3.14907 0.11540 0.88327 1.29635 2.26265 2.67916 3.01758 3.48357 3.51572 3.69343 3.73281 3.91174 4.35147 4.54888 4.61638 4.68992 4.85325 4.90813 4.98245 5.02458 5.14866 5.22217 5.29831 5.36355 5.45537 5.52533 5.58261 5.63607 5.69014 5.77416 5.83437 5.89341 5.98967 6.00555 6.05170 6.08827 6.22951 6.29245 6.33894 6.39539 6.61348 6.76109 6.90673 7.28339 7.39927 7.75421 8.03875 8.71216 9.17509 10.04053 10.19062 11.33960 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013920 B = 0.003262 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.975969 B = 8581.667105 C = 8837.349302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.149 3.851 3 H 0.075 0.925 4 C -0.136 4.136 5 C 0.185 3.815 6 H 0.050 0.950 7 N -0.734 5.734 8 C -0.333 4.333 9 H 0.064 0.936 10 C -0.043 4.043 11 N -0.942 5.942 12 Si 1.079 2.921 13 H -0.295 1.295 14 H -0.295 1.295 15 H -0.285 1.285 16 C -0.147 4.147 17 C 0.098 3.902 18 N -0.592 5.592 19 C 0.598 3.402 20 O -0.521 6.521 21 C -0.278 4.278 22 S 0.177 5.823 23 C 0.020 3.980 24 N -0.468 5.468 25 C 0.160 3.840 26 C -0.101 4.101 27 C -0.157 4.157 28 C -0.159 4.159 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.367 0.633 35 H 0.255 0.745 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.205 0.795 41 H 0.132 0.868 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.332 1.668 20.218 21.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.047 3.953 3 H 0.093 0.907 4 C -0.175 4.175 5 C 0.074 3.926 6 H 0.068 0.932 7 N -0.376 5.376 8 C -0.464 4.464 9 H 0.082 0.918 10 C -0.241 4.241 11 N -0.588 5.588 12 Si 0.910 3.090 13 H -0.223 1.223 14 H -0.222 1.222 15 H -0.210 1.210 16 C -0.189 4.189 17 C -0.026 4.026 18 N -0.324 5.324 19 C 0.383 3.617 20 O -0.399 6.399 21 C -0.401 4.401 22 S 0.433 5.567 23 C -0.275 4.275 24 N -0.181 5.181 25 C 0.024 3.976 26 C -0.122 4.122 27 C -0.194 4.194 28 C -0.197 4.197 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.200 0.800 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.221 0.779 41 H 0.150 0.850 42 H 0.123 0.877 43 H 0.116 0.884 44 H 0.120 0.880 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.001 1.918 19.435 20.430 hybrid contribution -1.595 -0.256 0.888 1.843 sum -7.596 1.662 20.323 21.759 Atomic orbital electron populations 1.22199 0.92637 1.03736 1.00828 1.21351 0.95588 0.95115 0.83256 0.90723 1.22324 0.97623 1.00975 0.96594 1.20098 0.90735 0.95007 0.86737 0.93237 1.42427 1.13085 1.54773 1.27311 1.20022 0.89611 1.26413 1.10348 0.91753 1.25762 1.06234 0.97516 0.94615 1.70879 1.08191 1.38267 1.41414 0.83260 0.74138 0.75500 0.76151 1.22278 1.22241 1.21031 1.22639 1.01851 0.99909 0.94461 1.22146 0.79415 1.00974 1.00104 1.48116 1.07647 1.56690 1.19988 1.16759 0.85605 0.78594 0.80698 1.90865 1.16145 1.56135 1.76755 1.25490 1.04006 1.03909 1.06736 1.84121 1.25142 1.25673 1.21779 1.28690 0.98453 0.95963 1.04418 1.65926 1.07707 1.32817 1.11685 1.19541 0.96199 0.90773 0.91101 1.20713 0.95943 0.91171 1.04332 1.22958 0.99452 1.00006 0.97007 1.22996 1.02335 0.96498 0.97889 0.90845 0.93427 0.91503 0.90452 0.91801 0.79996 0.93358 0.92295 0.90431 0.90508 0.90883 0.77860 0.85012 0.87700 0.88406 0.88040 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 7.61 37.16 0.28 -1.61 16 2 C 0.15 2.13 3.49 -67.60 -0.24 1.89 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 4 C -0.14 -2.22 4.84 -26.61 -0.13 -2.35 16 5 C 0.18 3.50 2.73 -67.89 -0.19 3.31 16 6 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 7 N -0.73 -17.78 5.12 -53.38 -0.27 -18.05 16 8 C -0.33 -9.06 9.93 -15.06 -0.15 -9.21 16 9 H 0.06 1.71 7.83 -52.48 -0.41 1.30 16 10 C -0.04 -1.24 5.50 -17.43 -0.10 -1.33 16 11 N -0.94 -28.75 13.70 55.49 0.76 -27.99 16 12 Si 1.08 25.40 29.92 -169.99 -5.09 20.31 16 13 H -0.30 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 C -0.15 -2.49 5.66 -26.61 -0.15 -2.64 16 17 C 0.10 1.31 5.99 -3.71 -0.02 1.29 16 18 N -0.59 -8.37 2.97 -166.76 -0.50 -8.87 16 19 C 0.60 8.77 6.99 -12.85 -0.09 8.68 16 20 O -0.52 -8.45 11.40 5.20 0.06 -8.39 16 21 C -0.28 -3.64 5.35 -37.10 -0.20 -3.84 16 22 S 0.18 1.70 20.43 -107.50 -2.20 -0.50 16 23 C 0.02 0.18 12.22 51.75 0.63 0.82 16 24 N -0.47 -5.58 9.81 -11.53 -0.11 -5.70 16 25 C 0.16 2.10 6.41 -83.89 -0.54 1.56 16 26 C -0.10 -1.26 5.77 -91.77 -0.53 -1.79 16 27 C -0.16 -1.62 10.09 -26.69 -0.27 -1.89 16 28 C -0.16 -1.77 10.24 -26.69 -0.27 -2.04 16 29 H 0.07 1.05 6.70 -51.93 -0.35 0.71 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.01 6.79 -51.93 -0.35 0.66 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.37 9.30 6.63 -40.82 -0.27 9.03 16 35 H 0.26 7.68 6.77 -40.82 -0.28 7.41 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.08 0.94 4.25 -36.36 -0.15 0.79 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.20 1.03 8.06 -52.48 -0.42 0.61 16 41 H 0.13 1.78 6.88 -51.93 -0.36 1.42 16 42 H 0.10 1.11 7.74 -51.93 -0.40 0.71 16 43 H 0.10 0.85 8.14 -51.94 -0.42 0.43 16 44 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 368.62 15.07 5.56 5.56 Total: -1.00 -32.28 368.62 -10.18 -42.46 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -6.44 Total: 10.33 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -1.95 Total: -9.15 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -0.12 Total: -60.62 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.06 Total: -8.39 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.09 Total: 20.31 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.20 Total: -0.50 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.28 -10.18 -42.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044774317.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.094 kcal (2) G-P(sol) polarization free energy of solvation -32.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds