Wall clock time and date at job start Tue Mar 31 2020 19:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.70009 * 2 1 4 4 C 1.53197 * 109.58220 * 239.63637 * 2 1 3 5 5 C 1.53043 * 109.30946 * 185.56398 * 4 2 1 6 6 H 1.08997 * 109.45973 * 301.37503 * 5 4 2 7 7 N 1.46494 * 109.46061 * 181.39997 * 5 4 2 8 8 C 1.36935 * 120.00415 * 154.97571 * 7 5 4 9 9 H 1.08006 * 119.99590 * 359.97438 * 8 7 5 10 10 C 1.38814 * 120.00513 * 179.97438 * 8 7 5 11 11 N 1.31619 * 119.99489 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00188 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46799 * 60.00088 * 12 10 8 14 14 H 1.48499 * 109.47091 * 300.00254 * 12 10 8 15 15 H 1.48493 * 109.47234 * 179.97438 * 12 10 8 16 16 C 1.53046 * 109.52555 * 61.38434 * 5 4 2 17 17 C 1.53192 * 109.31057 * 298.62792 * 16 5 4 18 18 N 1.46920 * 109.58471 * 120.36217 * 2 1 3 19 19 C 1.34781 * 120.63444 * 353.36950 * 18 2 1 20 20 O 1.21686 * 119.99361 * 355.32862 * 19 18 2 21 21 C 1.46674 * 119.99932 * 175.32168 * 19 18 2 22 22 S 1.76212 * 126.13166 * 50.06062 * 21 19 18 23 23 C 1.70957 * 90.31443 * 179.91751 * 22 21 19 24 24 N 1.29430 * 110.39064 * 0.34553 * 23 22 21 25 25 C 1.30938 * 117.36220 * 359.72890 * 24 23 22 26 26 C 1.50698 * 122.90586 * 180.02562 * 25 24 23 27 27 C 1.53008 * 117.49837 * 8.74038 * 26 25 24 28 28 C 1.53001 * 117.49443 * 300.08437 * 26 25 24 29 29 H 1.08997 * 109.47024 * 307.22306 * 1 2 3 30 30 H 1.09001 * 109.47355 * 67.22199 * 1 2 3 31 31 H 1.09005 * 109.47475 * 187.22255 * 1 2 3 32 32 H 1.08992 * 109.48898 * 65.62162 * 4 2 1 33 33 H 1.08998 * 109.50578 * 305.52133 * 4 2 1 34 34 H 0.97007 * 119.99674 * 334.97379 * 7 5 4 35 35 H 0.96995 * 120.00320 * 359.97438 * 11 10 8 36 36 H 1.09000 * 109.49551 * 58.58236 * 16 5 4 37 37 H 1.08998 * 109.49394 * 178.67492 * 16 5 4 38 38 H 1.09007 * 109.58131 * 174.42579 * 17 16 5 39 39 H 1.08994 * 109.58773 * 294.70350 * 17 16 5 40 40 H 1.08004 * 124.80234 * 180.02562 * 23 22 21 41 41 H 1.09000 * 115.55510 * 154.41246 * 26 25 24 42 42 H 1.09001 * 117.49212 * 0.02562 * 27 26 25 43 43 H 1.08989 * 117.50316 * 145.02083 * 27 26 25 44 44 H 1.09005 * 117.49876 * 214.97569 * 28 26 25 45 45 H 1.08995 * 117.50340 * 359.97167 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0434 -0.7296 -1.2454 5 6 3.5674 -0.8479 -1.1703 6 1 4.0059 0.1475 -1.0992 7 7 4.0651 -1.5155 -2.3755 8 6 5.3494 -1.2979 -2.7981 9 1 5.9952 -0.6337 -2.2429 10 6 5.8211 -1.9309 -3.9398 11 7 5.0342 -2.7407 -4.6160 12 14 7.5728 -1.6335 -4.5166 13 1 8.5217 -2.0547 -3.4547 14 1 7.7608 -0.1887 -4.8037 15 1 7.8286 -2.4210 -5.7492 16 6 3.9568 -1.6658 0.0633 17 6 3.4650 -0.9470 1.3236 18 7 2.0225 -0.6997 1.1944 19 6 1.1674 -1.1064 2.1535 20 8 -0.0131 -0.8210 2.0769 21 6 1.6597 -1.8929 3.2894 22 16 3.0413 -1.4946 4.3081 23 6 2.7791 -2.9085 5.2327 24 7 1.7621 -3.5649 4.7744 25 6 1.1366 -3.0605 3.7406 26 6 -0.0614 -3.7196 3.1071 27 6 -0.6744 -4.9189 3.8332 28 6 0.1238 -5.1303 2.5442 29 1 -0.3633 0.6216 0.8183 30 1 -0.3634 0.3979 -0.9475 31 1 -0.3634 -1.0195 0.1292 32 1 1.7657 -0.1671 -2.1367 33 1 1.6030 -1.7256 -1.2912 34 1 3.4849 -2.1118 -2.8743 35 1 4.1247 -2.8955 -4.3164 36 1 3.4983 -2.6529 0.0050 37 1 5.0411 -1.7696 0.1035 38 1 3.6518 -1.5719 2.1970 39 1 3.9920 0.0007 1.4330 40 1 3.3804 -3.2136 6.0764 41 1 -0.7403 -3.0515 2.5772 42 1 -0.2112 -5.2307 4.7694 43 1 -1.7562 -5.0398 3.7808 44 1 -0.4336 -5.3902 1.6442 45 1 1.1121 -5.5814 2.6317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044774317.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:59 Heat of formation + Delta-G solvation = 47.072967 kcal Electronic energy + Delta-G solvation = -27353.061311 eV Core-core repulsion = 23691.401685 eV Total energy + Delta-G solvation = -3661.659626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.95514 -40.89639 -38.82335 -37.51880 -36.48784 -34.37522 -33.82988 -31.62805 -30.73168 -28.45154 -27.18469 -25.87138 -24.72836 -24.33281 -23.44963 -23.31628 -22.14349 -21.25499 -19.64900 -19.31131 -19.10092 -17.90931 -17.47735 -16.87987 -16.74160 -16.46215 -15.98430 -15.83774 -15.52015 -15.43270 -15.15301 -15.04318 -14.82633 -14.49864 -14.13539 -13.54192 -13.48163 -13.41043 -13.24788 -12.85298 -12.65613 -12.57779 -12.48375 -12.45235 -12.13489 -12.08516 -11.88822 -11.81878 -11.69369 -11.41357 -11.21857 -10.94102 -10.89706 -10.53855 -10.24987 -9.81927 -9.67866 -9.12445 -8.36856 -5.31669 -0.72686 0.05351 0.49606 1.36000 1.59667 1.60675 1.69386 1.85282 1.94579 2.72470 2.88292 3.09994 3.32556 3.41395 3.55866 3.63577 3.74785 3.84479 3.88944 3.96707 4.02241 4.10327 4.18584 4.19896 4.39163 4.45008 4.48592 4.55225 4.59465 4.67836 4.74332 4.79291 4.86121 4.91918 4.96299 5.05406 5.09613 5.15175 5.20411 5.29537 5.37172 5.55747 5.61854 6.18817 6.50341 6.53885 6.92584 7.09639 7.99479 8.12577 9.14742 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013920 B = 0.003262 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.975969 B = 8581.667105 C = 8837.349302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.153 3.847 3 H 0.092 0.908 4 C -0.124 4.124 5 C 0.179 3.821 6 H 0.051 0.949 7 N -0.749 5.749 8 C -0.326 4.326 9 H 0.071 0.929 10 C -0.105 4.105 11 N -0.978 5.978 12 Si 1.126 2.874 13 H -0.276 1.276 14 H -0.277 1.277 15 H -0.297 1.297 16 C -0.136 4.136 17 C 0.107 3.893 18 N -0.595 5.595 19 C 0.598 3.402 20 O -0.543 6.543 21 C -0.318 4.318 22 S 0.222 5.778 23 C 0.036 3.964 24 N -0.493 5.493 25 C 0.155 3.845 26 C -0.122 4.122 27 C -0.139 4.139 28 C -0.159 4.159 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.357 0.643 35 H 0.242 0.758 36 H 0.040 0.960 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.247 0.753 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.114 0.886 44 H 0.108 0.892 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.153 2.544 22.592 23.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.051 3.949 3 H 0.110 0.890 4 C -0.163 4.163 5 C 0.071 3.929 6 H 0.069 0.931 7 N -0.390 5.390 8 C -0.457 4.457 9 H 0.089 0.911 10 C -0.296 4.296 11 N -0.626 5.626 12 Si 0.951 3.049 13 H -0.202 1.202 14 H -0.203 1.203 15 H -0.223 1.223 16 C -0.177 4.177 17 C -0.017 4.017 18 N -0.327 5.327 19 C 0.385 3.615 20 O -0.423 6.423 21 C -0.442 4.442 22 S 0.478 5.522 23 C -0.259 4.259 24 N -0.206 5.206 25 C 0.018 3.982 26 C -0.143 4.143 27 C -0.176 4.176 28 C -0.197 4.197 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.188 0.812 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.262 0.738 41 H 0.133 0.867 42 H 0.123 0.877 43 H 0.133 0.867 44 H 0.126 0.874 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.829 2.832 21.873 22.578 hybrid contribution -1.988 -0.522 0.269 2.073 sum -6.816 2.309 22.142 23.282 Atomic orbital electron populations 1.22055 0.92258 1.02604 1.01350 1.21325 0.95792 0.95526 0.82284 0.88990 1.22170 0.95664 1.00560 0.97891 1.20335 0.92255 0.94678 0.85622 0.93101 1.42663 1.12294 1.55072 1.28957 1.20378 0.90661 1.25011 1.09687 0.91097 1.27149 1.09393 0.97621 0.95477 1.70992 1.08115 1.40720 1.42813 0.82652 0.70494 0.76149 0.75631 1.20247 1.20290 1.22343 1.22399 1.01037 0.98979 0.95250 1.22121 0.79097 1.01889 0.98597 1.48136 1.07875 1.56787 1.19896 1.16964 0.85289 0.78215 0.81059 1.90844 1.17051 1.56920 1.77456 1.25427 1.06631 1.04545 1.07612 1.83879 1.22755 1.25138 1.20429 1.29462 0.97222 0.94895 1.04296 1.65980 1.09047 1.33677 1.11945 1.19677 0.96250 0.90893 0.91361 1.20703 0.96449 0.91539 1.05594 1.23004 1.00279 0.97876 0.96425 1.23003 1.02342 0.95568 0.98794 0.91145 0.92146 0.93295 0.90658 0.93182 0.81181 0.94714 0.94151 0.91437 0.88983 0.88659 0.73757 0.86712 0.87671 0.86746 0.87390 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 7.61 71.98 0.55 -2.88 16 2 C 0.15 4.22 3.49 44.98 0.16 4.38 16 3 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 4 C -0.12 -4.04 4.84 30.67 0.15 -3.89 16 5 C 0.18 6.76 2.73 45.02 0.12 6.88 16 6 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 7 N -0.75 -36.78 5.12 -322.81 -1.65 -38.43 16 8 C -0.33 -17.72 9.93 84.03 0.83 -16.89 16 9 H 0.07 3.70 7.83 -2.91 -0.02 3.67 16 10 C -0.11 -6.02 5.50 84.86 0.47 -5.55 16 11 N -0.98 -61.03 13.70 21.65 0.30 -60.73 16 12 Si 1.13 50.91 29.92 68.60 2.05 52.96 16 13 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 14 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 15 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 16 C -0.14 -4.51 5.66 30.67 0.17 -4.34 16 17 C 0.11 2.68 5.99 86.36 0.52 3.19 16 18 N -0.59 -16.23 2.97 -799.71 -2.38 -18.61 16 19 C 0.60 17.25 6.99 86.45 0.60 17.86 16 20 O -0.54 -17.76 11.40 -4.30 -0.05 -17.81 16 21 C -0.32 -8.02 5.35 23.88 0.13 -7.89 16 22 S 0.22 3.63 20.43 -56.49 -1.15 2.47 16 23 C 0.04 0.53 12.22 130.60 1.60 2.13 16 24 N -0.49 -10.84 9.81 -190.39 -1.87 -12.71 16 25 C 0.16 3.96 6.41 42.10 0.27 4.23 16 26 C -0.12 -3.07 5.77 -11.54 -0.07 -3.14 16 27 C -0.14 -2.76 10.09 30.62 0.31 -2.45 16 28 C -0.16 -3.53 10.24 30.62 0.31 -3.21 16 29 H 0.07 1.99 6.70 -2.39 -0.02 1.97 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.51 6.79 -2.38 -0.02 1.49 16 32 H 0.07 2.47 8.14 -2.39 -0.02 2.46 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.36 18.74 6.63 -92.70 -0.61 18.12 16 35 H 0.24 15.16 6.77 -92.71 -0.63 14.53 16 36 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.09 2.06 4.25 -12.28 -0.05 2.01 16 39 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.25 1.33 8.06 -2.91 -0.02 1.30 16 41 H 0.11 3.23 6.88 -2.39 -0.02 3.22 16 42 H 0.10 2.10 7.74 -2.39 -0.02 2.08 16 43 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 45 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -71.14 368.62 1.87 -69.27 By element: Atomic # 1 Polarization: 34.65 SS G_CDS: 0.50 Total: 35.15 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 6.12 Total: -11.56 kcal Atomic # 7 Polarization: -124.88 SS G_CDS: -5.60 Total: -130.48 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.05 Total: -17.81 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.05 Total: 52.96 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -1.15 Total: 2.47 kcal Total: -71.14 1.87 -69.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044774317.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.340 kcal (2) G-P(sol) polarization free energy of solvation -71.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds