Wall clock time and date at job start Tue Mar 31 2020 19:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.58532 * 2 1 4 4 C 1.53196 * 109.71781 * 120.36264 * 2 1 3 5 5 C 1.53036 * 109.31083 * 65.19959 * 4 2 1 6 6 H 1.09003 * 109.46261 * 301.37619 * 5 4 2 7 7 N 1.46501 * 109.46201 * 181.40251 * 5 4 2 8 8 C 1.36933 * 120.00705 * 154.97125 * 7 5 4 9 9 H 1.08007 * 119.99351 * 0.02562 * 8 7 5 10 10 C 1.38812 * 120.00395 * 180.02562 * 8 7 5 11 11 N 1.31616 * 119.99891 * 180.02562 * 10 8 7 12 12 Si 1.86792 * 120.00036 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47123 * 90.00145 * 12 10 8 14 14 H 1.48507 * 109.47160 * 330.00176 * 12 10 8 15 15 H 1.48494 * 109.47501 * 210.00212 * 12 10 8 16 16 C 1.53040 * 109.52796 * 61.38747 * 5 4 2 17 17 C 1.53194 * 109.31390 * 298.62846 * 16 5 4 18 18 N 1.46920 * 108.77642 * 54.63158 * 17 16 5 19 19 C 1.34776 * 120.63256 * 126.41287 * 18 17 16 20 20 O 1.21684 * 120.00451 * 176.45840 * 19 18 17 21 21 C 1.46689 * 119.99808 * 356.46148 * 19 18 17 22 22 C 1.35659 * 126.12761 * 42.04133 * 21 19 18 23 23 N 1.30939 * 114.18965 * 180.02562 * 22 21 19 24 24 C 1.29433 * 117.36512 * 0.02562 * 23 22 21 25 25 C 1.50700 * 124.80663 * 180.02562 * 24 23 22 26 26 C 1.53004 * 117.49758 * 8.71710 * 25 24 23 27 27 C 1.53008 * 117.49474 * 300.06055 * 25 24 23 28 28 S 1.70952 * 110.38806 * 359.72551 * 24 23 22 29 29 H 1.09002 * 109.47265 * 180.28288 * 1 2 3 30 30 H 1.08999 * 109.47129 * 300.28485 * 1 2 3 31 31 H 1.08997 * 109.47053 * 60.28439 * 1 2 3 32 32 H 1.09003 * 109.48421 * 305.25769 * 4 2 1 33 33 H 1.08990 * 109.50900 * 185.15842 * 4 2 1 34 34 H 0.97007 * 119.99471 * 334.97586 * 7 5 4 35 35 H 0.97001 * 119.99871 * 180.02562 * 11 10 8 36 36 H 1.09002 * 109.49690 * 58.58118 * 16 5 4 37 37 H 1.09000 * 109.49471 * 178.67517 * 16 5 4 38 38 H 1.08995 * 109.58563 * 174.42219 * 17 16 5 39 39 H 1.09004 * 109.58400 * 294.70533 * 17 16 5 40 40 H 1.08005 * 122.90604 * 359.97438 * 22 21 19 41 41 H 1.08992 * 115.55475 * 154.39188 * 25 24 23 42 42 H 1.08994 * 117.49934 * 0.02562 * 26 25 24 43 43 H 1.09002 * 117.49450 * 145.02580 * 26 25 24 44 44 H 1.09000 * 117.49413 * 214.98143 * 27 25 24 45 45 H 1.08994 * 117.49928 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0469 -0.7290 1.2443 5 6 1.6473 -2.2043 1.1691 6 1 0.5624 -2.2837 1.0993 7 7 2.1110 -2.8977 2.3734 8 6 1.4760 -4.0347 2.7963 9 1 0.6334 -4.4207 2.2416 10 6 1.9150 -4.6913 3.9378 11 7 1.3049 -5.7845 4.3439 12 14 3.3726 -4.0242 4.8967 13 1 2.8915 -3.0725 5.9302 14 1 4.2960 -3.3225 3.9691 15 1 4.0892 -5.1470 5.5531 16 6 2.2857 -2.8448 -0.0656 17 6 1.7719 -2.1399 -1.3250 18 7 2.0225 -0.6981 -1.1954 19 6 2.6912 -0.0283 -2.1550 20 8 2.8364 1.1767 -2.0675 21 6 3.2438 -0.7520 -3.3051 22 6 2.6283 -1.7430 -3.9975 23 7 3.3378 -2.2279 -4.9854 24 6 4.5119 -1.7192 -5.1804 25 6 5.4660 -2.1485 -6.2650 26 6 4.9400 -3.1177 -7.3256 27 6 5.9274 -3.6074 -6.2633 28 16 4.8238 -0.4859 -4.0384 29 1 -0.3634 -1.0277 0.0051 30 1 -0.3633 0.5182 0.8874 31 1 -0.3633 0.5094 -0.8925 32 1 1.6111 -0.2791 2.1365 33 1 3.1329 -0.6480 1.2888 34 1 2.8679 -2.5511 2.8714 35 1 1.6115 -6.2432 5.1418 36 1 3.3695 -2.7437 -0.0086 37 1 2.0200 -3.9012 -0.1059 38 1 2.2969 -2.5250 -2.1991 39 1 0.7021 -2.3187 -1.4330 40 1 1.6389 -2.1016 -3.7543 41 1 6.1844 -1.3939 -6.5849 42 1 3.9038 -3.4445 -7.2391 43 1 5.3128 -3.0009 -8.3432 44 1 6.9493 -3.8123 -6.5824 45 1 5.5412 -4.2564 -5.4774 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044833000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:02 Heat of formation + Delta-G solvation = 38.750051 kcal Electronic energy + Delta-G solvation = -26671.158618 eV Core-core repulsion = 23009.138083 eV Total energy + Delta-G solvation = -3662.020535 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.85813 -40.70128 -39.02397 -37.82110 -36.40436 -34.21154 -33.63618 -31.73244 -31.05328 -28.80159 -27.62836 -25.91438 -24.66787 -23.88287 -23.33655 -23.24324 -22.37665 -20.74864 -20.13925 -19.34334 -19.00413 -18.03739 -17.23877 -16.90100 -16.82897 -16.20683 -15.89158 -15.62468 -15.57643 -15.33257 -15.21699 -14.94812 -14.70406 -14.48460 -14.19155 -13.99616 -13.47748 -13.22743 -13.04322 -12.98929 -12.85654 -12.59447 -12.45611 -12.36760 -12.22326 -12.08565 -11.97924 -11.82865 -11.78530 -11.66028 -11.28896 -11.16594 -10.92778 -10.69047 -10.54487 -9.88242 -9.75230 -9.30685 -8.01350 -5.34215 -0.80657 -0.03077 0.52716 1.32188 1.37842 1.39640 1.46799 1.79306 1.92304 2.48459 2.83045 3.01832 3.29517 3.35208 3.49820 3.70941 3.78428 3.88514 3.92022 4.01546 4.05014 4.09811 4.18673 4.24735 4.28526 4.48276 4.49140 4.56365 4.70611 4.73428 4.81481 4.86239 4.95860 4.97184 5.00149 5.01809 5.14961 5.19888 5.27679 5.30294 5.44927 5.54414 5.79000 6.18684 6.22855 6.49963 6.87874 7.08574 7.85132 8.03124 9.20036 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.003091 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.979752 B = 9056.644776 C =10185.655997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.147 3.853 3 H 0.095 0.905 4 C -0.128 4.128 5 C 0.178 3.822 6 H 0.059 0.941 7 N -0.752 5.752 8 C -0.222 4.222 9 H 0.063 0.937 10 C -0.063 4.063 11 N -0.983 5.983 12 Si 0.950 3.050 13 H -0.279 1.279 14 H -0.257 1.257 15 H -0.299 1.299 16 C -0.142 4.142 17 C 0.100 3.900 18 N -0.584 5.584 19 C 0.597 3.403 20 O -0.573 6.573 21 C -0.319 4.319 22 C 0.098 3.902 23 N -0.495 5.495 24 C 0.081 3.919 25 C -0.116 4.116 26 C -0.142 4.142 27 C -0.148 4.148 28 S 0.229 5.771 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.362 0.638 35 H 0.256 0.744 36 H 0.049 0.951 37 H 0.064 0.936 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.201 0.799 41 H 0.152 0.848 42 H 0.093 0.907 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.816 10.869 -23.879 27.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.044 3.956 3 H 0.113 0.887 4 C -0.167 4.167 5 C 0.070 3.930 6 H 0.077 0.923 7 N -0.394 5.394 8 C -0.353 4.353 9 H 0.081 0.919 10 C -0.255 4.255 11 N -0.634 5.634 12 Si 0.778 3.222 13 H -0.206 1.206 14 H -0.182 1.182 15 H -0.226 1.226 16 C -0.183 4.183 17 C -0.022 4.022 18 N -0.315 5.315 19 C 0.384 3.616 20 O -0.454 6.454 21 C -0.443 4.443 22 C -0.060 4.060 23 N -0.209 5.209 24 C -0.193 4.193 25 C -0.138 4.138 26 C -0.182 4.182 27 C -0.187 4.187 28 S 0.490 5.510 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.195 0.805 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.217 0.783 41 H 0.170 0.830 42 H 0.111 0.889 43 H 0.144 0.856 44 H 0.147 0.853 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.432 11.638 -23.948 27.930 hybrid contribution -0.270 -0.474 1.505 1.600 sum 8.162 11.164 -22.444 26.362 Atomic orbital electron populations 1.22111 0.93018 1.03114 1.03144 1.21208 0.95492 0.96492 0.82372 0.88730 1.22154 1.01060 0.95448 0.98021 1.20414 0.97430 0.90062 0.85120 0.92280 1.42847 1.37335 1.29469 1.29788 1.19021 1.09761 1.00313 1.06194 0.91930 1.25421 1.02264 0.97891 0.99885 1.69867 1.45107 1.21449 1.27007 0.85487 0.80327 0.77295 0.79094 1.20572 1.18155 1.22603 1.22441 1.00294 1.00188 0.95333 1.22246 1.02597 0.78224 0.99150 1.48084 1.54011 1.09875 1.19560 1.16947 0.77489 0.85783 0.81375 1.90796 1.61150 1.14809 1.78620 1.25558 1.02970 1.08623 1.07162 1.22491 1.01667 0.91750 0.90097 1.66122 1.05475 1.29571 1.19761 1.27015 0.95269 0.96545 1.00457 1.20870 1.00109 0.96052 0.96756 1.23098 1.00143 0.99666 0.95244 1.23155 1.01458 0.92259 1.01809 1.83904 1.11815 1.32970 1.22329 0.91716 0.90029 0.91893 0.89607 0.92384 0.80484 0.93476 0.93227 0.91691 0.88064 0.88827 0.78259 0.82998 0.88879 0.85590 0.85319 0.89660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 9.04 71.98 0.65 -2.76 16 2 C 0.15 3.77 3.19 44.98 0.14 3.92 16 3 H 0.09 2.56 7.02 -2.39 -0.02 2.54 16 4 C -0.13 -3.70 5.03 30.67 0.15 -3.55 16 5 C 0.18 6.14 2.53 45.02 0.11 6.26 16 6 H 0.06 2.10 6.44 -2.39 -0.02 2.08 16 7 N -0.75 -33.45 4.92 -322.81 -1.59 -35.04 16 8 C -0.22 -12.12 10.41 84.03 0.87 -11.24 16 9 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 10 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 11 N -0.98 -62.09 13.97 21.65 0.30 -61.79 16 12 Si 0.95 45.13 27.73 68.60 1.90 47.03 16 13 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 14 H -0.26 -11.14 6.52 99.48 0.65 -10.49 16 15 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 16 C -0.14 -4.43 5.66 30.67 0.17 -4.25 16 17 C 0.10 2.38 5.12 86.36 0.44 2.82 16 18 N -0.58 -15.03 2.68 -799.69 -2.14 -17.17 16 19 C 0.60 16.87 7.60 86.45 0.66 17.53 16 20 O -0.57 -19.57 16.53 -4.30 -0.07 -19.64 16 21 C -0.32 -7.73 5.78 23.88 0.14 -7.59 16 22 C 0.10 2.10 8.99 84.23 0.76 2.85 16 23 N -0.50 -10.70 9.98 -190.30 -1.90 -12.60 16 24 C 0.08 1.51 6.96 88.46 0.62 2.13 16 25 C -0.12 -1.44 6.28 -11.54 -0.07 -1.51 16 26 C -0.14 -1.54 10.12 30.62 0.31 -1.23 16 27 C -0.15 -1.59 10.24 30.62 0.31 -1.28 16 28 S 0.23 4.66 23.17 -56.49 -1.31 3.35 16 29 H 0.06 1.46 5.75 -2.39 -0.01 1.45 16 30 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.09 2.39 8.14 -2.39 -0.02 2.38 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.36 15.85 5.66 -92.70 -0.52 15.32 16 35 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 36 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.10 2.17 4.11 -2.39 -0.01 2.16 16 39 H 0.09 1.92 7.51 -2.39 -0.02 1.90 16 40 H 0.20 3.47 6.70 -2.91 -0.02 3.45 16 41 H 0.15 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.09 1.35 7.84 -2.39 -0.02 1.33 16 43 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -71.56 370.99 1.37 -70.19 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.44 Total: 26.76 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 5.74 Total: -1.10 kcal Atomic # 7 Polarization: -121.27 SS G_CDS: -5.33 Total: -126.60 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.07 Total: -19.64 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.90 Total: 47.03 kcal Atomic # 16 Polarization: 4.66 SS G_CDS: -1.31 Total: 3.35 kcal Total: -71.56 1.37 -70.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044833000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.942 kcal (2) G-P(sol) polarization free energy of solvation -71.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds