Wall clock time and date at job start Tue Mar 31 2020 19:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.58300 * 2 1 4 4 C 1.53193 * 109.58636 * 120.28525 * 2 1 3 5 5 C 1.53039 * 109.31053 * 174.42028 * 4 2 1 6 6 H 1.09005 * 109.44585 * 58.65126 * 5 4 2 7 7 N 1.46498 * 109.45815 * 178.61609 * 5 4 2 8 8 C 1.36943 * 119.99880 * 205.07197 * 7 5 4 9 9 H 1.08001 * 119.99987 * 359.97438 * 8 7 5 10 10 C 1.38807 * 119.99871 * 180.02562 * 8 7 5 11 11 N 1.31619 * 120.00221 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 120.00188 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.46994 * 59.99564 * 12 10 8 14 14 H 1.48490 * 109.47222 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46709 * 300.00084 * 12 10 8 16 16 C 1.53041 * 109.54083 * 298.63947 * 5 4 2 17 17 C 1.53182 * 109.31273 * 61.36470 * 16 5 4 18 18 N 1.46927 * 108.89415 * 305.29092 * 17 16 5 19 19 C 1.34774 * 120.63155 * 233.67453 * 18 17 16 20 20 O 1.21688 * 119.99805 * 186.41536 * 19 18 17 21 21 C 1.46674 * 120.00238 * 6.41462 * 19 18 17 22 22 C 1.35662 * 126.13099 * 29.09643 * 21 19 18 23 23 N 1.30939 * 114.19582 * 179.97438 * 22 21 19 24 24 C 1.29437 * 117.36315 * 0.02562 * 23 22 21 25 25 C 1.50698 * 124.80567 * 179.97438 * 24 23 22 26 26 C 1.52998 * 117.49743 * 8.72637 * 25 24 23 27 27 C 1.52996 * 117.50267 * 300.06747 * 25 24 23 28 28 S 1.70957 * 110.38626 * 359.71989 * 24 23 22 29 29 H 1.08995 * 109.46445 * 292.85125 * 1 2 3 30 30 H 1.08998 * 109.46927 * 52.85102 * 1 2 3 31 31 H 1.09003 * 109.46661 * 172.85368 * 1 2 3 32 32 H 1.08996 * 109.49350 * 54.47423 * 4 2 1 33 33 H 1.08999 * 109.52291 * 294.39274 * 4 2 1 34 34 H 0.96998 * 120.00294 * 25.07256 * 7 5 4 35 35 H 0.97000 * 120.00108 * 180.02562 * 11 10 8 36 36 H 1.08998 * 109.49332 * 301.40859 * 16 5 4 37 37 H 1.08997 * 109.49631 * 181.31958 * 16 5 4 38 38 H 1.08999 * 109.59324 * 65.15665 * 17 16 5 39 39 H 1.09010 * 109.58988 * 185.43788 * 17 16 5 40 40 H 1.07999 * 122.90538 * 0.04196 * 22 21 19 41 41 H 1.09003 * 115.54487 * 154.38925 * 25 24 23 42 42 H 1.09001 * 117.50326 * 359.97438 * 26 25 24 43 43 H 1.09003 * 117.49780 * 145.01434 * 26 25 24 44 44 H 1.09003 * 117.49805 * 214.97914 * 27 25 24 45 45 H 1.09000 * 117.49775 * 359.97417 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 1.2463 5 6 3.5676 -0.8466 1.1711 6 1 4.0060 0.1488 1.0990 7 7 4.0653 -1.5129 2.3771 8 6 5.3494 -1.2942 2.7997 9 1 5.9953 -0.6309 2.2437 10 6 5.8211 -1.9260 3.9421 11 7 5.0341 -2.7348 4.6195 12 14 7.5725 -1.6272 4.5191 13 1 7.7598 -0.1821 4.8050 14 1 7.8279 -2.4126 5.7532 15 1 8.5219 -2.0489 3.4579 16 6 3.9570 -1.6657 -0.0616 17 6 3.4651 -0.9485 -1.3226 18 7 2.0223 -0.7012 -1.1971 19 6 1.1694 -1.1106 -2.1570 20 8 -0.0056 -0.7991 -2.1001 21 6 1.6574 -1.9316 -3.2701 22 6 2.7036 -2.7942 -3.2293 23 7 2.9367 -3.4092 -4.3615 24 6 2.1629 -3.1295 -5.3608 25 6 2.2799 -3.7359 -6.7354 26 6 3.2564 -4.9002 -6.9130 27 6 3.5927 -3.5237 -7.4918 28 16 0.9851 -1.9799 -4.8983 29 1 -0.3632 0.3991 0.9470 30 1 -0.3633 0.6206 -0.8191 31 1 -0.3633 -1.0197 -0.1279 32 1 1.6031 -1.7237 1.2933 33 1 1.7660 -0.1647 2.1373 34 1 3.4853 -2.1089 2.8763 35 1 5.3636 -3.1759 5.4181 36 1 3.4984 -2.6528 -0.0021 37 1 5.0413 -1.7697 -0.1016 38 1 3.9904 0.0004 -1.4317 39 1 3.6542 -1.5732 -2.1956 40 1 3.2927 -2.9603 -2.3395 41 1 1.3599 -3.7569 -7.3197 42 1 3.8145 -5.2274 -6.0358 43 1 2.9791 -5.6871 -7.6146 44 1 3.5366 -3.4054 -8.5740 45 1 4.3717 -2.9451 -6.9954 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044833001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:06 Heat of formation + Delta-G solvation = 75.917599 kcal Electronic energy + Delta-G solvation = -26643.455528 eV Core-core repulsion = 22983.046699 eV Total energy + Delta-G solvation = -3660.408829 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.88311 -39.74622 -37.44330 -37.21785 -34.56779 -33.19244 -31.97598 -30.24093 -29.28227 -27.32925 -26.53832 -24.41257 -23.39859 -22.79382 -22.60276 -22.41475 -20.75186 -19.93937 -18.78383 -18.28926 -17.15119 -16.74579 -16.18432 -16.10473 -15.21616 -14.89811 -14.84647 -14.72068 -14.55988 -13.92873 -13.76063 -13.59109 -13.39156 -12.93826 -12.72374 -12.59375 -12.17496 -12.02846 -11.89797 -11.77198 -11.57100 -11.35356 -11.19989 -10.99285 -10.91915 -10.85649 -10.79281 -10.45771 -10.29902 -10.04497 -9.88560 -9.73916 -9.64779 -9.19151 -9.00917 -8.88074 -8.49396 -7.01667 -5.80361 -3.10018 0.05806 0.88857 1.42683 2.23069 3.00140 3.04426 3.41124 3.43720 3.45830 3.46883 3.74108 4.35971 4.42427 4.46372 4.54389 4.57662 4.92221 4.98582 5.01047 5.11351 5.24431 5.26596 5.30111 5.39720 5.44310 5.53549 5.58780 5.61300 5.78192 5.78885 5.83996 5.86417 5.96729 6.09760 6.22126 6.29999 6.38308 6.42635 6.49363 6.68596 6.84363 6.98757 7.38297 7.40926 7.65033 8.10065 8.37684 9.48978 10.05817 10.40527 11.41989 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013706 B = 0.002954 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.484923 B = 9476.522907 C =11120.492283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.150 3.850 3 H 0.075 0.925 4 C -0.135 4.135 5 C 0.180 3.820 6 H 0.049 0.951 7 N -0.723 5.723 8 C -0.242 4.242 9 H 0.070 0.930 10 C -0.012 4.012 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.153 4.153 17 C 0.079 3.921 18 N -0.588 5.588 19 C 0.594 3.406 20 O -0.533 6.533 21 C -0.291 4.291 22 C 0.084 3.916 23 N -0.476 5.476 24 C 0.069 3.931 25 C -0.102 4.102 26 C -0.148 4.148 27 C -0.154 4.154 28 S 0.220 5.780 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.197 0.803 41 H 0.128 0.872 42 H 0.110 0.890 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.331 0.982 -24.055 25.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.047 3.953 3 H 0.093 0.907 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.067 0.933 7 N -0.363 5.363 8 C -0.373 4.373 9 H 0.088 0.912 10 C -0.208 4.208 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.212 1.212 16 C -0.194 4.194 17 C -0.043 4.043 18 N -0.321 5.321 19 C 0.380 3.620 20 O -0.412 6.412 21 C -0.415 4.415 22 C -0.073 4.073 23 N -0.190 5.190 24 C -0.205 4.205 25 C -0.124 4.124 26 C -0.187 4.187 27 C -0.193 4.193 28 S 0.480 5.520 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.218 0.782 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.213 0.787 41 H 0.146 0.854 42 H 0.129 0.871 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.233 1.352 -24.545 25.924 hybrid contribution 1.494 -0.348 1.478 2.130 sum -6.739 1.004 -23.067 24.052 Atomic orbital electron populations 1.22191 0.92815 1.03639 1.00876 1.21411 0.95464 0.95174 0.83209 0.90743 1.22312 0.97640 1.01069 0.96410 1.20146 0.90857 0.95007 0.87047 0.93349 1.42415 1.12970 1.54397 1.26529 1.19178 0.89122 1.22413 1.06580 0.91214 1.24749 0.98148 0.99750 0.98150 1.69650 1.35484 1.33430 1.19424 0.86285 0.84570 0.77478 0.77942 1.21264 1.21702 1.21238 1.22712 1.01949 1.00026 0.94698 1.22521 0.79374 1.01704 1.00738 1.48051 1.07515 1.56642 1.19875 1.16742 0.85450 0.79100 0.80697 1.90872 1.16509 1.57282 1.76556 1.25874 1.05250 1.09989 1.00398 1.22628 0.95073 0.92735 0.96863 1.66086 1.27980 1.25850 0.99042 1.26484 0.95967 0.99583 0.98453 1.20549 0.96675 1.05110 0.90070 1.23048 1.00832 0.91118 1.03658 1.23075 0.96230 1.00316 0.99667 1.83904 1.29853 1.36715 1.01548 0.93362 0.90843 0.91703 0.91692 0.90330 0.78228 0.93408 0.92082 0.90313 0.91152 0.88785 0.78677 0.85369 0.87143 0.87959 0.87751 0.88126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 7.62 37.16 0.28 -1.68 16 2 C 0.15 2.15 3.50 -67.44 -0.24 1.91 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.14 -2.20 4.84 -26.61 -0.13 -2.33 16 5 C 0.18 3.35 2.73 -67.89 -0.19 3.16 16 6 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 7 N -0.72 -17.42 5.12 -53.38 -0.27 -17.69 16 8 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 9 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 10 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 11 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 12 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 C -0.15 -2.47 5.43 -26.62 -0.14 -2.61 16 17 C 0.08 1.04 5.73 -3.72 -0.02 1.02 16 18 N -0.59 -8.31 2.98 -166.54 -0.50 -8.80 16 19 C 0.59 8.80 7.42 -12.86 -0.10 8.70 16 20 O -0.53 -8.91 12.71 5.20 0.07 -8.84 16 21 C -0.29 -3.79 6.03 -37.10 -0.22 -4.01 16 22 C 0.08 1.05 9.15 -18.85 -0.17 0.88 16 23 N -0.48 -5.80 9.98 -11.50 -0.11 -5.92 16 24 C 0.07 0.72 6.96 -13.29 -0.09 0.62 16 25 C -0.10 -0.76 6.28 -91.78 -0.58 -1.34 16 26 C -0.15 -1.02 10.12 -26.70 -0.27 -1.29 16 27 C -0.15 -0.97 10.24 -26.70 -0.27 -1.25 16 28 S 0.22 2.34 23.13 -107.50 -2.49 -0.15 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.08 6.66 -51.93 -0.35 0.74 16 31 H 0.06 1.02 6.86 -51.93 -0.36 0.66 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.38 9.99 7.80 -40.82 -0.32 9.67 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.09 1.11 3.33 -51.92 -0.17 0.94 16 40 H 0.20 2.36 5.67 -52.49 -0.30 2.06 16 41 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.11 0.95 7.84 -51.93 -0.41 0.54 16 43 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 371.18 15.07 5.59 5.59 Total: -1.00 -31.19 371.18 -10.90 -42.09 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -6.51 Total: 9.03 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -2.38 Total: -5.26 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.16 Total: -59.43 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.07 Total: -8.84 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.49 Total: -0.15 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.19 -10.90 -42.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044833001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.011 kcal (2) G-P(sol) polarization free energy of solvation -31.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds