Wall clock time and date at job start Tue Mar 31 2020 19:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.69984 * 2 1 4 4 C 1.52755 * 109.51302 * 239.87497 * 2 1 3 5 5 C 1.53037 * 109.38335 * 185.70751 * 4 2 1 6 6 H 1.09006 * 109.46083 * 301.21678 * 5 4 2 7 7 N 1.46504 * 109.45154 * 181.25010 * 5 4 2 8 8 C 1.36940 * 120.00142 * 154.93607 * 7 5 4 9 9 H 1.08005 * 119.99865 * 359.97438 * 8 7 5 10 10 C 1.38804 * 119.99933 * 180.02562 * 8 7 5 11 11 N 1.31619 * 120.00427 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99966 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47172 * 89.99876 * 12 10 8 14 14 H 1.48502 * 109.47137 * 209.99608 * 12 10 8 15 15 H 1.48495 * 109.47009 * 329.99584 * 12 10 8 16 16 C 1.53047 * 109.54210 * 61.23719 * 5 4 2 17 17 C 1.53191 * 109.31009 * 298.63847 * 16 5 4 18 18 N 1.46925 * 108.77700 * 54.63575 * 17 16 5 19 19 C 1.34766 * 120.63445 * 126.37219 * 18 17 16 20 20 O 1.21683 * 120.00254 * 186.32722 * 19 18 17 21 21 C 1.46680 * 120.00092 * 6.31841 * 19 18 17 22 22 C 1.35662 * 126.13018 * 34.38589 * 21 19 18 23 23 N 1.30946 * 114.19706 * 179.97438 * 22 21 19 24 24 C 1.29435 * 117.35699 * 359.97438 * 23 22 21 25 25 C 1.50703 * 124.80025 * 180.02562 * 24 23 22 26 26 C 1.52997 * 117.49889 * 8.59898 * 25 24 23 27 27 C 1.52995 * 60.00193 * 252.51133 * 26 25 24 28 28 S 1.70945 * 110.39516 * 0.02562 * 24 23 22 29 29 H 1.08997 * 109.47152 * 303.27050 * 1 2 3 30 30 H 1.08995 * 109.46745 * 63.27568 * 1 2 3 31 31 H 1.09000 * 109.46701 * 183.27273 * 1 2 3 32 32 H 1.08995 * 109.56489 * 65.66935 * 4 2 1 33 33 H 1.09005 * 109.38580 * 305.62883 * 4 2 1 34 34 H 0.96998 * 119.99713 * 334.94338 * 7 5 4 35 35 H 0.96993 * 120.00371 * 180.02562 * 11 10 8 36 36 H 1.08997 * 109.50044 * 178.68213 * 16 5 4 37 37 H 1.09007 * 109.51923 * 58.60138 * 16 5 4 38 38 H 1.09000 * 109.58826 * 294.84097 * 17 16 5 39 39 H 1.09001 * 109.58143 * 174.41681 * 17 16 5 40 40 H 1.08004 * 122.90582 * 359.97438 * 22 21 19 41 41 H 1.08998 * 115.54915 * 154.31035 * 25 24 23 42 42 H 1.09007 * 117.50082 * 0.02562 * 26 25 24 43 43 H 1.09000 * 117.49777 * 145.01728 * 26 25 24 44 44 H 1.09000 * 117.50169 * 252.51119 * 27 26 25 45 45 H 1.08999 * 117.50072 * 107.49239 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0403 -0.7226 -1.2453 5 6 3.5639 -0.8463 -1.1724 6 1 4.0058 0.1475 -1.0994 7 7 4.0577 -1.5126 -2.3800 8 6 5.3419 -1.2977 -2.8042 9 1 5.9906 -0.6366 -2.2486 10 6 5.8096 -1.9286 -3.9487 11 7 5.0189 -2.7338 -4.6261 12 14 7.5616 -1.6360 -4.5268 13 1 8.4621 -2.6401 -3.9055 14 1 7.6229 -1.7637 -6.0051 15 1 7.9926 -0.2716 -4.1296 16 6 3.9524 -1.6685 0.0586 17 6 3.4644 -0.9516 1.3214 18 7 2.0225 -0.6994 1.1947 19 6 1.1673 -1.1066 2.1534 20 8 -0.0327 -0.9957 1.9853 21 6 1.6831 -1.6837 3.3993 22 6 2.8270 -1.3244 4.0339 23 7 3.0641 -1.9946 5.1336 24 6 2.2022 -2.8969 5.4777 25 6 2.3077 -3.7629 6.7065 26 6 3.4079 -3.4268 7.7152 27 6 3.5352 -4.6679 6.8296 28 16 0.9273 -2.9672 4.3410 29 1 -0.3633 0.5637 0.8592 30 1 -0.3632 0.4621 -0.9179 31 1 -0.3633 -1.0260 0.0587 32 1 1.7634 -0.1568 -2.1348 33 1 1.5965 -1.7171 -1.2939 34 1 3.4749 -2.1059 -2.8793 35 1 5.3458 -3.1749 -5.4256 36 1 5.0364 -1.7760 0.0971 37 1 3.4910 -2.6543 -0.0014 38 1 3.9928 -0.0046 1.4312 39 1 3.6503 -1.5794 2.1928 40 1 3.4855 -0.5523 3.6640 41 1 1.3631 -4.1398 7.0985 42 1 4.0552 -2.5791 7.4902 43 1 3.1872 -3.5825 8.7712 44 1 3.3981 -5.6402 7.3030 45 1 4.2663 -4.6371 6.0219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044833003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:12 Heat of formation + Delta-G solvation = 68.713860 kcal Electronic energy + Delta-G solvation = -26582.945676 eV Core-core repulsion = 22922.224469 eV Total energy + Delta-G solvation = -3660.721206 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.84428 -39.78721 -37.46017 -37.19298 -34.56991 -33.15364 -31.97382 -30.30946 -29.22223 -27.27827 -26.56299 -24.42164 -23.43813 -22.79598 -22.59326 -22.37632 -20.77479 -19.85811 -18.89728 -18.19638 -17.17158 -16.72411 -16.24883 -15.81714 -15.42990 -14.99773 -14.81572 -14.66957 -14.43149 -14.05153 -13.72762 -13.62474 -13.27339 -13.16298 -12.63481 -12.55680 -12.23970 -12.07369 -11.90399 -11.78638 -11.58114 -11.45157 -11.16738 -10.99869 -10.93770 -10.84790 -10.81492 -10.47378 -10.26926 -10.04096 -9.87518 -9.73952 -9.64833 -9.16286 -8.99702 -8.88800 -8.49686 -7.01167 -5.80385 -3.09924 0.07530 0.87682 1.42280 2.24439 2.93855 3.05659 3.40499 3.43999 3.45752 3.47534 3.72472 4.35490 4.42162 4.45916 4.54695 4.57750 4.91417 4.97481 5.00101 5.12471 5.25155 5.27625 5.31323 5.39147 5.44537 5.51089 5.60260 5.61238 5.76042 5.78011 5.82451 5.88075 5.97820 6.09925 6.22532 6.31615 6.40900 6.43742 6.50109 6.71059 6.85602 7.00242 7.35943 7.40120 7.65386 8.09648 8.37685 9.48995 10.06073 10.40791 11.42115 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013512 B = 0.002926 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.701581 B = 9567.877342 C =11053.400438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.149 3.851 3 H 0.074 0.926 4 C -0.136 4.136 5 C 0.179 3.821 6 H 0.048 0.952 7 N -0.723 5.723 8 C -0.240 4.240 9 H 0.070 0.930 10 C -0.013 4.013 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 C -0.150 4.150 17 C 0.094 3.906 18 N -0.588 5.588 19 C 0.593 3.407 20 O -0.531 6.531 21 C -0.289 4.289 22 C 0.087 3.913 23 N -0.477 5.477 24 C 0.068 3.932 25 C -0.102 4.102 26 C -0.148 4.148 27 C -0.153 4.153 28 S 0.224 5.776 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.186 0.814 41 H 0.129 0.871 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.405 0.067 23.517 24.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.047 3.953 3 H 0.092 0.908 4 C -0.175 4.175 5 C 0.069 3.931 6 H 0.066 0.934 7 N -0.364 5.364 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.209 4.209 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.207 1.207 16 C -0.191 4.191 17 C -0.029 4.029 18 N -0.320 5.320 19 C 0.379 3.621 20 O -0.410 6.410 21 C -0.413 4.413 22 C -0.070 4.070 23 N -0.191 5.191 24 C -0.206 4.206 25 C -0.124 4.124 26 C -0.187 4.187 27 C -0.193 4.193 28 S 0.484 5.516 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.202 0.798 41 H 0.146 0.854 42 H 0.128 0.872 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.364 -0.348 23.569 25.011 hybrid contribution 1.573 0.553 -0.950 1.919 sum -6.791 0.205 22.618 23.617 Atomic orbital electron populations 1.22224 0.92697 1.03747 1.00638 1.21295 0.95561 0.95048 0.83429 0.90759 1.22237 0.97638 1.01124 0.96472 1.20170 0.90900 0.94976 0.87094 0.93354 1.42427 1.12892 1.54636 1.26405 1.19224 0.89065 1.22479 1.06381 0.91161 1.24751 0.98144 0.99847 0.98142 1.69659 1.35307 1.33673 1.19371 0.86208 0.84579 0.77677 0.77830 1.21725 1.21777 1.20735 1.22681 1.01819 1.00042 0.94569 1.22264 0.79262 1.00834 1.00556 1.48003 1.07740 1.56640 1.19644 1.16783 0.85866 0.77973 0.81516 1.90891 1.14750 1.56099 1.79273 1.25865 1.02748 1.07863 1.04860 1.22307 0.94596 0.99877 0.90212 1.66039 1.29605 1.07439 1.16037 1.26447 0.94840 0.98498 1.00767 1.20547 0.96341 1.01835 0.93681 1.23022 0.99853 1.00067 0.95737 1.23076 0.97902 0.95212 1.03063 1.83980 1.23206 1.30267 1.14162 0.91380 0.93587 0.91058 0.90357 0.91719 0.78242 0.93470 0.90467 0.92200 0.91037 0.89738 0.79756 0.85361 0.87247 0.88004 0.87702 0.88057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 7.58 37.16 0.28 -1.65 16 2 C 0.15 2.13 3.47 -67.82 -0.24 1.90 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.14 -2.23 4.81 -26.84 -0.13 -2.36 16 5 C 0.18 3.37 2.73 -67.89 -0.19 3.18 16 6 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 7 N -0.72 -17.60 5.12 -53.38 -0.27 -17.87 16 8 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 9 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 10 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 11 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 12 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 C -0.15 -2.51 5.66 -26.61 -0.15 -2.66 16 17 C 0.09 1.22 5.16 -3.71 -0.02 1.20 16 18 N -0.59 -8.23 2.98 -167.00 -0.50 -8.73 16 19 C 0.59 8.70 7.52 -12.86 -0.10 8.60 16 20 O -0.53 -8.87 12.50 5.20 0.07 -8.81 16 21 C -0.29 -3.69 5.79 -37.10 -0.21 -3.90 16 22 C 0.09 1.01 9.00 -18.85 -0.17 0.84 16 23 N -0.48 -5.54 9.98 -11.50 -0.11 -5.66 16 24 C 0.07 0.70 6.96 -13.29 -0.09 0.61 16 25 C -0.10 -0.76 6.28 -91.77 -0.58 -1.34 16 26 C -0.15 -0.98 10.12 -26.74 -0.27 -1.25 16 27 C -0.15 -1.01 10.23 -26.73 -0.27 -1.28 16 28 S 0.22 2.43 23.16 -107.50 -2.49 -0.05 16 29 H 0.07 1.00 6.74 -51.93 -0.35 0.65 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 1.13 6.75 -51.93 -0.35 0.78 16 32 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.38 10.09 7.80 -40.82 -0.32 9.77 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.01 4.52 -51.93 -0.23 0.78 16 40 H 0.19 1.83 6.57 -52.48 -0.34 1.48 16 41 H 0.13 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.11 0.88 7.84 -51.93 -0.41 0.47 16 43 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 372.42 15.07 5.61 5.61 Total: -1.00 -31.47 372.42 -11.00 -42.47 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -6.62 Total: 8.34 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -2.38 Total: -5.18 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: -0.16 Total: -59.40 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.07 Total: -8.81 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -2.49 Total: -0.05 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.47 -11.00 -42.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044833003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.185 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds