Wall clock time and date at job start Tue Mar 31 2020 19:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.58670 * 2 1 4 4 C 1.53193 * 109.58442 * 120.28141 * 2 1 3 5 5 C 1.53046 * 109.30868 * 174.56396 * 4 2 1 6 6 H 1.09005 * 109.45662 * 178.62780 * 5 4 2 7 7 N 1.46494 * 109.46311 * 58.65917 * 5 4 2 8 8 C 1.36930 * 120.00488 * 154.96891 * 7 5 4 9 9 H 1.08002 * 119.99841 * 359.72496 * 8 7 5 10 10 C 1.38815 * 120.00409 * 179.97438 * 8 7 5 11 11 N 1.31622 * 119.99472 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00184 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47261 * 90.00334 * 12 10 8 14 14 H 1.48499 * 109.46905 * 210.00576 * 12 10 8 15 15 H 1.48497 * 109.46953 * 330.00124 * 12 10 8 16 16 C 1.53034 * 109.52860 * 298.63971 * 5 4 2 17 17 C 1.53168 * 109.32844 * 61.37390 * 16 5 4 18 18 N 1.46926 * 108.76649 * 305.35591 * 17 16 5 19 19 C 1.34777 * 120.63151 * 233.62705 * 18 17 16 20 20 O 1.21625 * 120.00044 * 187.54878 * 19 18 17 21 21 C 1.47267 * 119.99792 * 7.54964 * 19 18 17 22 22 C 1.35204 * 123.14210 * 188.29575 * 21 19 18 23 23 S 1.70942 * 108.82879 * 179.90572 * 22 21 19 24 24 C 1.70769 * 91.12772 * 0.30487 * 23 22 21 25 25 C 1.50701 * 124.71966 * 179.81531 * 24 23 22 26 26 C 1.53001 * 117.49552 * 8.62852 * 25 24 23 27 27 C 1.52998 * 117.49925 * 300.00646 * 25 24 23 28 28 N 1.28645 * 110.56260 * 359.82319 * 24 23 22 29 29 H 1.09002 * 109.47060 * 292.37469 * 1 2 3 30 30 H 1.09000 * 109.47173 * 52.37178 * 1 2 3 31 31 H 1.08998 * 109.46999 * 172.37917 * 1 2 3 32 32 H 1.08999 * 109.49935 * 54.61574 * 4 2 1 33 33 H 1.09000 * 109.52686 * 294.53034 * 4 2 1 34 34 H 0.97010 * 119.99733 * 334.96952 * 7 5 4 35 35 H 0.97008 * 119.99296 * 179.97438 * 11 10 8 36 36 H 1.08995 * 109.49997 * 181.31011 * 16 5 4 37 37 H 1.09004 * 109.50037 * 301.41128 * 16 5 4 38 38 H 1.08997 * 109.59027 * 185.57066 * 17 16 5 39 39 H 1.08998 * 109.58979 * 65.13761 * 17 16 5 40 40 H 1.08004 * 125.58483 * 0.03381 * 22 21 19 41 41 H 1.08996 * 115.54866 * 154.33324 * 25 24 23 42 42 H 1.08994 * 117.49919 * 359.97438 * 26 25 24 43 43 H 1.09000 * 117.49463 * 145.01700 * 26 25 24 44 44 H 1.09008 * 117.49587 * 214.97721 * 27 25 24 45 45 H 1.08994 * 117.50013 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5678 -0.8433 1.1729 6 1 3.9380 -1.3393 2.0702 7 7 4.1548 0.4955 1.0779 8 6 5.4380 0.7124 1.5038 9 1 6.0158 -0.1026 1.9140 10 6 5.9944 1.9809 1.4133 11 7 5.2882 2.9754 0.9184 12 14 7.7451 2.2766 1.9938 13 1 8.6848 2.0549 0.8655 14 1 7.8760 3.6737 2.4799 15 1 8.0660 1.3364 3.0974 16 6 3.9601 -1.6607 -0.0600 17 6 3.4685 -0.9437 -1.3210 18 7 2.0254 -0.6991 -1.1936 19 6 1.1721 -1.1087 -2.1531 20 8 0.0014 -0.7823 -2.1056 21 6 1.6573 -1.9513 -3.2591 22 6 0.9026 -2.2634 -4.3367 23 16 1.8219 -3.2504 -5.3869 24 6 3.1568 -3.1970 -4.3233 25 6 4.4736 -3.8895 -4.5631 26 6 4.6968 -4.5268 -5.9361 27 6 4.4542 -5.4121 -4.7120 28 7 2.8820 -2.4835 -3.2887 29 1 -0.3633 0.3912 0.9503 30 1 -0.3633 0.6274 -0.8139 31 1 -0.3633 -1.0186 -0.1363 32 1 1.6049 -1.7246 1.2922 33 1 1.7638 -0.1659 2.1375 34 1 3.6344 1.2285 0.7131 35 1 5.6769 3.8619 0.8555 36 1 5.0445 -1.7624 -0.0991 37 1 3.5033 -2.6488 -0.0019 38 1 3.6576 -1.5685 -2.1939 39 1 3.9920 0.0063 -1.4288 40 1 -0.1137 -1.9401 -4.5071 41 1 5.3364 -3.4431 -4.0689 42 1 3.8911 -4.4455 -6.6656 43 1 5.7067 -4.4996 -6.3454 44 1 5.3046 -5.9674 -4.3160 45 1 3.4892 -5.9130 -4.6361 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044881365.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:15 Heat of formation + Delta-G solvation = 77.853905 kcal Electronic energy + Delta-G solvation = -27441.296683 eV Core-core repulsion = 23780.971819 eV Total energy + Delta-G solvation = -3660.324864 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.89302 -39.28976 -37.58694 -37.11952 -34.10995 -32.38044 -31.82284 -30.61309 -28.96154 -26.91519 -26.35556 -24.36254 -23.64453 -23.15750 -22.84934 -21.42222 -20.82147 -19.67244 -18.75820 -17.68540 -17.14852 -16.62825 -16.08053 -15.85159 -15.12109 -15.04966 -14.60622 -14.26283 -13.98127 -13.81687 -13.77278 -13.54471 -13.17024 -12.95387 -12.60160 -12.47861 -12.17904 -11.95096 -11.90080 -11.80622 -11.45543 -11.18790 -11.05906 -10.95945 -10.88133 -10.72608 -10.61929 -10.44013 -10.19156 -9.88759 -9.80351 -9.57913 -9.24962 -8.97371 -8.95197 -8.65349 -8.00495 -6.90740 -5.73240 -3.01267 0.36188 1.00428 1.41698 1.87012 3.28663 3.38425 3.44703 3.50089 3.51184 3.51716 3.71420 4.36192 4.51440 4.57735 4.62231 4.86369 4.97882 5.16942 5.19765 5.33865 5.39333 5.44381 5.53283 5.58413 5.63838 5.69758 5.71968 5.74217 5.95358 5.96107 6.08898 6.13237 6.28094 6.38242 6.53876 6.62716 6.67985 6.77908 6.84378 6.91649 7.02012 7.24277 7.35124 7.73490 7.86930 8.44584 8.45457 9.56527 10.14867 10.49933 11.49496 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011827 B = 0.003766 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.837079 B = 7433.825562 C = 9040.088460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.143 3.857 3 H 0.081 0.919 4 C -0.131 4.131 5 C 0.171 3.829 6 H 0.048 0.952 7 N -0.721 5.721 8 C -0.235 4.235 9 H 0.069 0.931 10 C -0.014 4.014 11 N -0.933 5.933 12 Si 0.904 3.096 13 H -0.291 1.291 14 H -0.293 1.293 15 H -0.283 1.283 16 C -0.138 4.138 17 C 0.067 3.933 18 N -0.573 5.573 19 C 0.585 3.415 20 O -0.542 6.542 21 C 0.024 3.976 22 C -0.232 4.232 23 S 0.198 5.802 24 C 0.056 3.944 25 C -0.087 4.087 26 C -0.169 4.169 27 C -0.158 4.158 28 N -0.424 5.424 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.143 0.857 39 H 0.071 0.929 40 H 0.189 0.811 41 H 0.138 0.862 42 H 0.098 0.902 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.322 -16.999 -14.774 23.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.040 3.960 3 H 0.099 0.901 4 C -0.170 4.170 5 C 0.061 3.939 6 H 0.066 0.934 7 N -0.364 5.364 8 C -0.366 4.366 9 H 0.087 0.913 10 C -0.209 4.209 11 N -0.582 5.582 12 Si 0.736 3.264 13 H -0.219 1.219 14 H -0.219 1.219 15 H -0.209 1.209 16 C -0.180 4.180 17 C -0.055 4.055 18 N -0.303 5.303 19 C 0.370 3.630 20 O -0.422 6.422 21 C -0.110 4.110 22 C -0.373 4.373 23 S 0.456 5.544 24 C -0.222 4.222 25 C -0.108 4.108 26 C -0.207 4.207 27 C -0.197 4.197 28 N -0.139 5.139 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.159 0.841 39 H 0.090 0.910 40 H 0.206 0.794 41 H 0.156 0.844 42 H 0.116 0.884 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.566 -17.182 -15.166 23.840 hybrid contribution 0.692 1.204 1.122 1.785 sum -5.874 -15.978 -14.044 22.069 Atomic orbital electron populations 1.22172 0.93392 1.03057 1.00669 1.21296 0.94697 0.96226 0.83747 0.90095 1.22220 0.97615 1.00060 0.97101 1.20247 0.90301 0.88144 0.95252 0.93416 1.42492 1.13832 1.04715 1.75346 1.19241 0.89952 0.94114 1.33326 0.91266 1.24708 0.98189 0.95912 1.02136 1.69664 1.36390 1.00569 1.51578 0.86226 0.84935 0.77039 0.78212 1.21856 1.21904 1.20856 1.22362 1.00944 0.97688 0.96957 1.23041 0.77513 1.02823 1.02166 1.48028 1.08529 1.54764 1.19002 1.17149 0.85295 0.79625 0.80963 1.90822 1.17132 1.58123 1.76083 1.20707 0.89445 1.02935 0.97918 1.26544 1.06970 1.05272 0.98554 1.82641 1.04685 1.44160 1.22962 1.26533 1.00365 1.00944 0.94363 1.20453 0.93067 0.95091 1.02217 1.23157 1.04049 1.03142 0.90383 1.23149 1.04260 0.91183 1.01117 1.66717 1.15940 1.09713 1.21563 0.93754 0.90846 0.92174 0.92251 0.90796 0.78214 0.93608 0.91292 0.93716 0.84094 0.91041 0.79394 0.84433 0.88387 0.87092 0.87290 0.88245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 7.62 37.16 0.28 -2.01 16 2 C 0.14 2.63 3.19 -67.60 -0.22 2.42 16 3 H 0.08 1.68 6.64 -51.93 -0.34 1.33 16 4 C -0.13 -2.35 5.07 -26.61 -0.13 -2.48 16 5 C 0.17 3.47 3.10 -67.89 -0.21 3.26 16 6 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 7 N -0.72 -17.87 4.31 -53.39 -0.23 -18.10 16 8 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 9 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 10 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 11 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 12 Si 0.90 22.39 29.55 -169.99 -5.02 17.36 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 C -0.14 -2.58 5.78 -26.63 -0.15 -2.73 16 17 C 0.07 1.25 6.00 -3.72 -0.02 1.22 16 18 N -0.57 -10.49 2.97 -166.55 -0.49 -10.98 16 19 C 0.58 10.36 7.43 -12.59 -0.09 10.27 16 20 O -0.54 -10.18 12.38 5.26 0.07 -10.11 16 21 C 0.02 0.36 6.51 -84.52 -0.55 -0.19 16 22 C -0.23 -2.78 10.62 29.65 0.31 -2.46 16 23 S 0.20 1.74 21.65 -107.50 -2.33 -0.59 16 24 C 0.06 0.61 6.99 -13.61 -0.10 0.52 16 25 C -0.09 -0.74 6.33 -91.77 -0.58 -1.32 16 26 C -0.17 -0.98 10.01 -26.73 -0.27 -1.25 16 27 C -0.16 -0.99 10.23 -26.73 -0.27 -1.27 16 28 N -0.42 -6.03 6.76 -8.51 -0.06 -6.08 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.32 6.67 -51.93 -0.35 0.97 16 31 H 0.06 1.04 6.85 -51.93 -0.36 0.68 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.38 10.15 6.06 -40.82 -0.25 9.90 16 35 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.14 2.45 3.60 -88.22 -0.32 2.13 16 39 H 0.07 1.56 7.74 -51.93 -0.40 1.16 16 40 H 0.19 2.03 8.04 -52.48 -0.42 1.60 16 41 H 0.14 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.10 0.51 7.21 -51.93 -0.37 0.13 16 43 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.11 0.57 8.14 -51.92 -0.42 0.14 16 45 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 366.60 15.07 5.52 5.52 Total: -1.00 -31.78 366.60 -10.64 -42.42 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -6.58 Total: 11.08 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -2.24 Total: -3.10 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: -0.06 Total: -62.58 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.07 Total: -10.11 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.33 Total: -0.59 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.78 -10.64 -42.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044881365.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.275 kcal (2) G-P(sol) polarization free energy of solvation -31.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds