Wall clock time and date at job start Tue Mar 31 2020 19:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.58670 * 2 1 4 4 C 1.53193 * 109.58442 * 120.28141 * 2 1 3 5 5 C 1.53046 * 109.30868 * 174.56396 * 4 2 1 6 6 H 1.09005 * 109.45662 * 178.62780 * 5 4 2 7 7 N 1.46494 * 109.46311 * 58.65917 * 5 4 2 8 8 C 1.36930 * 120.00488 * 154.96891 * 7 5 4 9 9 H 1.08002 * 119.99841 * 359.72496 * 8 7 5 10 10 C 1.38815 * 120.00409 * 179.97438 * 8 7 5 11 11 N 1.31622 * 119.99472 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00184 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47261 * 90.00334 * 12 10 8 14 14 H 1.48499 * 109.46905 * 210.00576 * 12 10 8 15 15 H 1.48497 * 109.46953 * 330.00124 * 12 10 8 16 16 C 1.53034 * 109.52860 * 298.63971 * 5 4 2 17 17 C 1.53168 * 109.32844 * 61.37390 * 16 5 4 18 18 N 1.46926 * 108.76649 * 305.35591 * 17 16 5 19 19 C 1.34777 * 120.63151 * 233.62705 * 18 17 16 20 20 O 1.21625 * 120.00044 * 187.54878 * 19 18 17 21 21 C 1.47267 * 119.99792 * 7.54964 * 19 18 17 22 22 C 1.35204 * 123.14210 * 188.29575 * 21 19 18 23 23 S 1.70942 * 108.82879 * 179.90572 * 22 21 19 24 24 C 1.70769 * 91.12772 * 0.30487 * 23 22 21 25 25 C 1.50701 * 124.71966 * 179.81531 * 24 23 22 26 26 C 1.53001 * 117.49552 * 8.62852 * 25 24 23 27 27 C 1.52998 * 117.49925 * 300.00646 * 25 24 23 28 28 N 1.28645 * 110.56260 * 359.82319 * 24 23 22 29 29 H 1.09002 * 109.47060 * 292.37469 * 1 2 3 30 30 H 1.09000 * 109.47173 * 52.37178 * 1 2 3 31 31 H 1.08998 * 109.46999 * 172.37917 * 1 2 3 32 32 H 1.08999 * 109.49935 * 54.61574 * 4 2 1 33 33 H 1.09000 * 109.52686 * 294.53034 * 4 2 1 34 34 H 0.97010 * 119.99733 * 334.96952 * 7 5 4 35 35 H 0.97008 * 119.99296 * 179.97438 * 11 10 8 36 36 H 1.08995 * 109.49997 * 181.31011 * 16 5 4 37 37 H 1.09004 * 109.50037 * 301.41128 * 16 5 4 38 38 H 1.08997 * 109.59027 * 185.57066 * 17 16 5 39 39 H 1.08998 * 109.58979 * 65.13761 * 17 16 5 40 40 H 1.08004 * 125.58483 * 0.03381 * 22 21 19 41 41 H 1.08996 * 115.54866 * 154.33324 * 25 24 23 42 42 H 1.08994 * 117.49919 * 359.97438 * 26 25 24 43 43 H 1.09000 * 117.49463 * 145.01700 * 26 25 24 44 44 H 1.09008 * 117.49587 * 214.97721 * 27 25 24 45 45 H 1.08994 * 117.50013 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5678 -0.8433 1.1729 6 1 3.9380 -1.3393 2.0702 7 7 4.1548 0.4955 1.0779 8 6 5.4380 0.7124 1.5038 9 1 6.0158 -0.1026 1.9140 10 6 5.9944 1.9809 1.4133 11 7 5.2882 2.9754 0.9184 12 14 7.7451 2.2766 1.9938 13 1 8.6848 2.0549 0.8655 14 1 7.8760 3.6737 2.4799 15 1 8.0660 1.3364 3.0974 16 6 3.9601 -1.6607 -0.0600 17 6 3.4685 -0.9437 -1.3210 18 7 2.0254 -0.6991 -1.1936 19 6 1.1721 -1.1087 -2.1531 20 8 0.0014 -0.7823 -2.1056 21 6 1.6573 -1.9513 -3.2591 22 6 0.9026 -2.2634 -4.3367 23 16 1.8219 -3.2504 -5.3869 24 6 3.1568 -3.1970 -4.3233 25 6 4.4736 -3.8895 -4.5631 26 6 4.6968 -4.5268 -5.9361 27 6 4.4542 -5.4121 -4.7120 28 7 2.8820 -2.4835 -3.2887 29 1 -0.3633 0.3912 0.9503 30 1 -0.3633 0.6274 -0.8139 31 1 -0.3633 -1.0186 -0.1363 32 1 1.6049 -1.7246 1.2922 33 1 1.7638 -0.1659 2.1375 34 1 3.6344 1.2285 0.7131 35 1 5.6769 3.8619 0.8555 36 1 5.0445 -1.7624 -0.0991 37 1 3.5033 -2.6488 -0.0019 38 1 3.6576 -1.5685 -2.1939 39 1 3.9920 0.0063 -1.4288 40 1 -0.1137 -1.9401 -4.5071 41 1 5.3364 -3.4431 -4.0689 42 1 3.8911 -4.4455 -6.6656 43 1 5.7067 -4.4996 -6.3454 44 1 5.3046 -5.9674 -4.3160 45 1 3.4892 -5.9130 -4.6361 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044881365.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:14 Heat of formation + Delta-G solvation = 59.201181 kcal Electronic energy + Delta-G solvation = -27442.105526 eV Core-core repulsion = 23780.971819 eV Total energy + Delta-G solvation = -3661.133707 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.09415 -40.44426 -38.86608 -37.96464 -35.90051 -33.89284 -33.63227 -31.58809 -30.83625 -28.41593 -27.30942 -25.82776 -25.44144 -24.48090 -23.29900 -22.79078 -21.70687 -20.94752 -20.03135 -19.24875 -18.87254 -17.53907 -17.21702 -17.16173 -16.68328 -16.06036 -16.03231 -15.64194 -15.51220 -15.21028 -15.07053 -14.81757 -14.53287 -14.38184 -14.18439 -13.52120 -13.39519 -13.26736 -13.11343 -12.95023 -12.80983 -12.66786 -12.48281 -12.36778 -12.13230 -12.08281 -11.99230 -11.82894 -11.64815 -11.48355 -11.41801 -10.98367 -10.65394 -10.47931 -9.97673 -9.83688 -9.47624 -8.95964 -7.91082 -5.18775 -0.54108 0.19498 0.52840 0.80522 1.47300 1.48685 1.57023 2.02428 2.22025 2.57927 2.71809 3.00290 3.42127 3.54970 3.78488 3.84518 3.87960 4.02757 4.04208 4.06887 4.12304 4.14808 4.38009 4.39468 4.44271 4.49322 4.57799 4.64815 4.77883 4.80976 4.87024 5.00902 5.04367 5.10058 5.11622 5.18570 5.22324 5.23259 5.33081 5.36035 5.47719 5.56057 5.80010 6.30350 6.34627 6.51645 7.08719 7.36721 8.12463 8.36898 9.32604 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011827 B = 0.003766 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.837079 B = 7433.825562 C = 9040.088460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.142 3.858 3 H 0.049 0.951 4 C -0.119 4.119 5 C 0.164 3.836 6 H 0.048 0.952 7 N -0.730 5.730 8 C -0.232 4.232 9 H 0.076 0.924 10 C -0.076 4.076 11 N -0.972 5.972 12 Si 0.970 3.030 13 H -0.289 1.289 14 H -0.299 1.299 15 H -0.269 1.269 16 C -0.126 4.126 17 C 0.076 3.924 18 N -0.580 5.580 19 C 0.581 3.419 20 O -0.559 6.559 21 C -0.010 4.010 22 C -0.239 4.239 23 S 0.302 5.698 24 C 0.043 3.957 25 C -0.116 4.116 26 C -0.151 4.151 27 C -0.150 4.150 28 N -0.461 5.461 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.371 0.629 35 H 0.248 0.752 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.163 0.837 39 H 0.028 0.972 40 H 0.197 0.803 41 H 0.127 0.873 42 H 0.108 0.892 43 H 0.126 0.874 44 H 0.120 0.880 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.212 -19.913 -16.402 26.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.039 3.961 3 H 0.067 0.933 4 C -0.158 4.158 5 C 0.055 3.945 6 H 0.066 0.934 7 N -0.371 5.371 8 C -0.364 4.364 9 H 0.094 0.906 10 C -0.268 4.268 11 N -0.623 5.623 12 Si 0.799 3.201 13 H -0.216 1.216 14 H -0.226 1.226 15 H -0.194 1.194 16 C -0.167 4.167 17 C -0.046 4.046 18 N -0.310 5.310 19 C 0.367 3.633 20 O -0.440 6.440 21 C -0.144 4.144 22 C -0.381 4.381 23 S 0.561 5.439 24 C -0.234 4.234 25 C -0.138 4.138 26 C -0.189 4.189 27 C -0.189 4.189 28 N -0.176 5.176 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.204 0.796 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.178 0.822 39 H 0.047 0.953 40 H 0.215 0.785 41 H 0.145 0.855 42 H 0.126 0.874 43 H 0.144 0.856 44 H 0.138 0.862 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.460 -20.163 -16.803 27.030 hybrid contribution 0.599 1.970 1.471 2.531 sum -5.861 -18.193 -15.332 24.503 Atomic orbital electron populations 1.22005 0.91970 1.02723 1.01031 1.21218 0.95669 0.94776 0.84461 0.93310 1.22103 0.95766 1.01120 0.96832 1.20476 0.91794 0.86268 0.95923 0.93380 1.42640 1.13190 1.06152 1.75113 1.19623 0.90908 0.94148 1.31737 0.90619 1.25487 1.02070 0.95899 1.03316 1.69838 1.38075 1.00688 1.53688 0.85185 0.80397 0.76529 0.77941 1.21618 1.22603 1.19401 1.22198 1.00345 0.98209 0.95957 1.22970 0.77561 1.00849 1.03251 1.48028 1.08384 1.55224 1.19372 1.17557 0.85029 0.79457 0.81221 1.90793 1.17686 1.58896 1.76652 1.20350 0.90854 1.04779 0.98383 1.26861 1.07639 1.05081 0.98564 1.82237 1.01270 1.40960 1.19403 1.26942 1.02110 1.00103 0.94219 1.20556 0.91706 0.96574 1.04943 1.23304 1.05335 1.00863 0.89404 1.23273 1.05026 0.89567 1.00993 1.66409 1.16009 1.11501 1.23688 0.92090 0.92201 0.92242 0.90129 0.90700 0.79574 0.94317 0.92338 0.91678 0.82200 0.95350 0.78548 0.85497 0.87363 0.85573 0.86196 0.87777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.10 7.62 71.98 0.55 -3.55 16 2 C 0.14 5.40 3.19 44.97 0.14 5.55 16 3 H 0.05 2.16 6.64 -2.39 -0.02 2.15 16 4 C -0.12 -4.29 5.07 30.67 0.16 -4.13 16 5 C 0.16 6.74 3.10 45.02 0.14 6.88 16 6 H 0.05 1.98 8.08 -2.38 -0.02 1.96 16 7 N -0.73 -37.34 4.31 -322.82 -1.39 -38.73 16 8 C -0.23 -12.96 9.93 84.04 0.83 -12.13 16 9 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 10 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 11 N -0.97 -60.66 13.06 21.65 0.28 -60.38 16 12 Si 0.97 46.79 29.55 68.60 2.03 48.82 16 13 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 14 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 15 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 16 C -0.13 -4.75 5.78 30.66 0.18 -4.57 16 17 C 0.08 2.95 6.00 86.35 0.52 3.47 16 18 N -0.58 -21.90 2.97 -799.10 -2.37 -24.27 16 19 C 0.58 20.92 7.43 86.62 0.64 21.57 16 20 O -0.56 -21.29 12.38 -4.11 -0.05 -21.34 16 21 C -0.01 -0.29 6.51 40.56 0.26 -0.02 16 22 C -0.24 -5.35 10.62 67.12 0.71 -4.63 16 23 S 0.30 4.37 21.65 -56.49 -1.22 3.15 16 24 C 0.04 0.87 6.99 88.58 0.62 1.49 16 25 C -0.12 -1.74 6.33 -11.54 -0.07 -1.81 16 26 C -0.15 -1.23 10.01 30.60 0.31 -0.93 16 27 C -0.15 -1.43 10.23 30.59 0.31 -1.12 16 28 N -0.46 -12.84 6.76 -180.83 -1.22 -14.06 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 2.20 6.67 -2.39 -0.02 2.18 16 31 H 0.06 2.03 6.85 -2.39 -0.02 2.02 16 32 H 0.08 2.56 8.14 -2.39 -0.02 2.55 16 33 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.37 20.71 6.06 -92.70 -0.56 20.15 16 35 H 0.25 15.11 8.31 -92.70 -0.77 14.34 16 36 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 38 H 0.16 5.71 3.60 -74.05 -0.27 5.45 16 39 H 0.03 1.32 7.74 -2.39 -0.02 1.30 16 40 H 0.20 3.92 8.04 -2.91 -0.02 3.90 16 41 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.11 0.65 7.21 -2.39 -0.02 0.64 16 43 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 45 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -71.08 366.60 2.02 -69.06 By element: Atomic # 1 Polarization: 35.45 SS G_CDS: 0.20 Total: 35.64 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 5.77 Total: 2.12 kcal Atomic # 7 Polarization: -132.74 SS G_CDS: -4.70 Total: -137.44 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.05 Total: -21.34 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Atomic # 16 Polarization: 4.37 SS G_CDS: -1.22 Total: 3.15 kcal Total: -71.08 2.02 -69.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044881365.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.263 kcal (2) G-P(sol) polarization free energy of solvation -71.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds