Wall clock time and date at job start Tue Mar 31 2020 19:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.58678 * 2 1 4 4 C 1.53197 * 109.59005 * 239.55807 * 2 1 3 5 5 C 1.53037 * 109.31550 * 185.56068 * 4 2 1 6 6 H 1.08999 * 109.46104 * 301.37720 * 5 4 2 7 7 N 1.46494 * 109.45988 * 181.39957 * 5 4 2 8 8 C 1.36939 * 120.00261 * 154.97671 * 7 5 4 9 9 H 1.08001 * 119.99903 * 359.97438 * 8 7 5 10 10 C 1.38810 * 120.00236 * 180.02562 * 8 7 5 11 11 N 1.31621 * 120.00091 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99794 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47313 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47254 * 239.99656 * 12 10 8 15 15 H 1.48508 * 109.47166 * 120.00042 * 12 10 8 16 16 C 1.53047 * 109.52402 * 61.38751 * 5 4 2 17 17 C 1.53192 * 109.30952 * 298.62480 * 16 5 4 18 18 N 1.46922 * 109.58759 * 120.28167 * 2 1 3 19 19 C 1.34780 * 120.63402 * 353.37496 * 18 2 1 20 20 O 1.21632 * 119.99447 * 355.02458 * 19 18 2 21 21 C 1.47267 * 120.00159 * 175.02270 * 19 18 2 22 22 C 1.35208 * 123.13869 * 187.50406 * 21 19 18 23 23 S 1.70935 * 108.82628 * 179.97438 * 22 21 19 24 24 C 1.70765 * 91.13049 * 359.97438 * 23 22 21 25 25 C 1.50701 * 124.72095 * 179.97438 * 24 23 22 26 26 C 1.53000 * 117.49978 * 8.78058 * 25 24 23 27 27 C 1.53001 * 117.50404 * 300.11455 * 25 24 23 28 28 N 1.28646 * 110.56103 * 359.76697 * 24 23 22 29 29 H 1.08998 * 109.47465 * 306.80127 * 1 2 3 30 30 H 1.09002 * 109.47401 * 66.80626 * 1 2 3 31 31 H 1.08999 * 109.46923 * 186.80174 * 1 2 3 32 32 H 1.09000 * 109.48247 * 65.61750 * 4 2 1 33 33 H 1.09000 * 109.50996 * 305.52528 * 4 2 1 34 34 H 0.97005 * 120.00301 * 334.97598 * 7 5 4 35 35 H 0.96995 * 119.99855 * 359.97438 * 11 10 8 36 36 H 1.08992 * 109.49534 * 58.57779 * 16 5 4 37 37 H 1.08999 * 109.49434 * 178.67639 * 16 5 4 38 38 H 1.09002 * 109.58158 * 174.42553 * 17 16 5 39 39 H 1.08996 * 109.58820 * 294.84379 * 17 16 5 40 40 H 1.08000 * 125.58667 * 359.95850 * 22 21 19 41 41 H 1.09005 * 115.54626 * 154.44464 * 25 24 23 42 42 H 1.08999 * 117.49746 * 359.97438 * 26 25 24 43 43 H 1.08991 * 117.50115 * 145.02100 * 26 25 24 44 44 H 1.08994 * 117.50219 * 214.97842 * 27 25 24 45 45 H 1.09004 * 117.48899 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7313 -1.2443 5 6 3.5675 -0.8494 -1.1691 6 1 4.0059 0.1462 -1.0993 7 7 4.0652 -1.5186 -2.3734 8 6 5.3495 -1.3015 -2.7962 9 1 5.9953 -0.6365 -2.2420 10 6 5.8209 -1.9352 -3.9377 11 7 5.0337 -2.7453 -4.6134 12 14 7.5726 -1.6384 -4.5148 13 1 8.2455 -0.6928 -3.5884 14 1 7.5520 -1.0604 -5.8825 15 1 8.3127 -2.9258 -4.5326 16 6 3.9569 -1.6656 0.0656 17 6 3.4650 -0.9451 1.3249 18 7 2.0225 -0.6980 1.1953 19 6 1.1674 -1.1034 2.1550 20 8 -0.0116 -0.8138 2.0810 21 6 1.6606 -1.8972 3.2932 22 6 0.8430 -2.4606 4.2110 23 16 1.7952 -3.2923 5.3614 24 6 3.2290 -2.8409 4.5511 25 6 4.6193 -3.2228 4.9894 26 6 4.7475 -4.2407 6.1246 27 6 5.0729 -2.7664 6.3776 28 7 2.9569 -2.1331 3.5119 29 1 -0.3634 0.6156 0.8228 30 1 -0.3634 0.4047 -0.9446 31 1 -0.3633 -1.0204 0.1217 32 1 1.7658 -0.1699 -2.1364 33 1 1.6032 -1.7273 -1.2889 34 1 3.4851 -2.1156 -2.8714 35 1 4.1243 -2.8996 -4.3135 36 1 3.4984 -2.6527 0.0086 37 1 5.0412 -1.7693 0.1060 38 1 3.6519 -1.5688 2.1991 39 1 3.9903 0.0039 1.4317 40 1 -0.2350 -2.3956 4.2164 41 1 5.3697 -3.2528 4.1994 42 1 3.8263 -4.6337 6.5545 43 1 5.5825 -4.9399 6.0816 44 1 6.1216 -2.4965 6.5009 45 1 4.3653 -2.1901 6.9738 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044881370.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:24 Heat of formation + Delta-G solvation = 76.813159 kcal Electronic energy + Delta-G solvation = -27001.501644 eV Core-core repulsion = 23341.131650 eV Total energy + Delta-G solvation = -3660.369995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.06921 -39.42885 -37.64812 -37.21551 -34.67864 -32.59443 -31.99902 -30.76414 -28.96963 -26.91384 -26.51521 -24.40084 -23.63267 -22.93192 -22.86744 -21.46712 -20.84665 -20.06695 -19.27210 -18.09798 -17.22920 -16.77089 -16.26885 -15.84717 -15.62171 -14.98062 -14.84113 -14.40200 -14.29351 -13.93153 -13.73325 -13.58534 -13.35306 -13.17134 -12.81017 -12.68635 -12.37777 -12.06754 -12.02528 -11.90117 -11.59229 -11.37232 -11.29977 -11.04039 -10.79833 -10.74123 -10.51113 -10.47295 -10.05367 -9.99720 -9.92177 -9.43235 -9.21568 -9.09105 -9.02167 -8.72008 -8.32719 -6.98236 -6.07043 -3.06275 0.22982 0.87517 1.28763 1.71464 3.06674 3.25469 3.36137 3.52651 3.56356 3.59632 3.68858 4.26941 4.41105 4.44037 4.68504 4.73393 4.83624 5.03388 5.12407 5.13787 5.18635 5.34429 5.39616 5.42083 5.54088 5.56381 5.60647 5.65647 5.69554 5.77788 5.90672 6.02844 6.12497 6.19909 6.39476 6.45721 6.49097 6.51543 6.64874 6.79651 6.98571 7.09697 7.19680 7.60658 7.85192 8.23186 8.78915 9.26782 10.13208 10.29107 11.41653 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011687 B = 0.003373 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.246556 B = 8300.087279 C =10218.887781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.145 3.855 3 H 0.072 0.928 4 C -0.134 4.134 5 C 0.182 3.818 6 H 0.047 0.953 7 N -0.737 5.737 8 C -0.328 4.328 9 H 0.065 0.935 10 C -0.047 4.047 11 N -0.946 5.946 12 Si 1.085 2.915 13 H -0.295 1.295 14 H -0.293 1.293 15 H -0.294 1.294 16 C -0.142 4.142 17 C 0.050 3.950 18 N -0.578 5.578 19 C 0.588 3.412 20 O -0.538 6.538 21 C 0.022 3.978 22 C -0.231 4.231 23 S 0.209 5.791 24 C 0.057 3.943 25 C -0.089 4.089 26 C -0.168 4.168 27 C -0.158 4.158 28 N -0.429 5.429 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.366 0.634 35 H 0.255 0.745 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.160 0.840 39 H 0.056 0.944 40 H 0.190 0.810 41 H 0.139 0.861 42 H 0.098 0.902 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.362 -0.727 25.982 26.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.042 3.958 3 H 0.090 0.910 4 C -0.173 4.173 5 C 0.072 3.928 6 H 0.065 0.935 7 N -0.378 5.378 8 C -0.459 4.459 9 H 0.083 0.917 10 C -0.244 4.244 11 N -0.592 5.592 12 Si 0.916 3.084 13 H -0.221 1.221 14 H -0.221 1.221 15 H -0.221 1.221 16 C -0.183 4.183 17 C -0.073 4.073 18 N -0.309 5.309 19 C 0.373 3.627 20 O -0.417 6.417 21 C -0.112 4.112 22 C -0.373 4.373 23 S 0.467 5.533 24 C -0.220 4.220 25 C -0.111 4.111 26 C -0.206 4.206 27 C -0.197 4.197 28 N -0.144 5.144 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.199 0.801 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.175 0.825 39 H 0.074 0.926 40 H 0.207 0.793 41 H 0.156 0.844 42 H 0.117 0.883 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.497 -1.175 25.380 25.802 hybrid contribution -1.480 0.770 -0.028 1.668 sum -5.977 -0.405 25.352 26.050 Atomic orbital electron populations 1.22186 0.92928 1.03528 1.00669 1.21353 0.95385 0.95259 0.83840 0.90995 1.22288 0.97791 1.00708 0.96500 1.20162 0.90591 0.95056 0.87010 0.93514 1.42456 1.13019 1.54698 1.27664 1.20106 0.89647 1.26003 1.10126 0.91725 1.25747 1.06248 0.97716 0.94701 1.70805 1.08219 1.38595 1.41597 0.83160 0.74273 0.75468 0.75499 1.22140 1.22068 1.22076 1.22534 1.01379 0.99509 0.94894 1.23460 0.77800 1.02252 1.03836 1.48061 1.08477 1.55368 1.18995 1.17152 0.85347 0.79138 0.81055 1.90843 1.16370 1.57565 1.76927 1.20641 0.87302 1.03821 0.99455 1.26548 1.06922 1.04248 0.99580 1.82694 0.96852 1.47074 1.26698 1.26573 0.99876 1.00155 0.95414 1.20479 0.91079 1.05631 0.93890 1.23179 1.04200 0.92923 1.00341 1.23176 1.03322 0.97124 0.96054 1.66515 1.16801 1.15238 1.15816 0.90845 0.93649 0.91731 0.90756 0.92046 0.80141 0.93342 0.92947 0.90999 0.82477 0.92572 0.79288 0.84368 0.88348 0.86978 0.87199 0.88210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 7.61 37.15 0.28 -1.80 16 2 C 0.14 2.34 3.49 -67.60 -0.24 2.10 16 3 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 4 C -0.13 -2.43 4.84 -26.61 -0.13 -2.56 16 5 C 0.18 3.80 2.73 -67.89 -0.19 3.62 16 6 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 7 N -0.74 -18.96 5.12 -53.39 -0.27 -19.23 16 8 C -0.33 -9.34 9.93 -15.06 -0.15 -9.49 16 9 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 10 C -0.05 -1.38 5.50 -17.43 -0.10 -1.47 16 11 N -0.95 -29.77 13.70 55.49 0.76 -29.01 16 12 Si 1.08 26.37 29.92 -169.99 -5.09 21.28 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 C -0.14 -2.71 5.66 -26.61 -0.15 -2.86 16 17 C 0.05 0.80 6.29 -3.71 -0.02 0.78 16 18 N -0.58 -9.42 2.97 -166.54 -0.49 -9.92 16 19 C 0.59 9.48 7.48 -12.59 -0.09 9.39 16 20 O -0.54 -9.27 12.28 5.25 0.06 -9.21 16 21 C 0.02 0.30 6.56 -84.52 -0.55 -0.25 16 22 C -0.23 -2.52 10.62 29.65 0.31 -2.21 16 23 S 0.21 1.65 21.65 -107.50 -2.33 -0.68 16 24 C 0.06 0.57 6.99 -13.61 -0.10 0.48 16 25 C -0.09 -0.68 6.33 -91.77 -0.58 -1.26 16 26 C -0.17 -0.87 10.01 -26.69 -0.27 -1.14 16 27 C -0.16 -0.86 10.24 -26.69 -0.27 -1.13 16 28 N -0.43 -5.55 6.63 -8.51 -0.06 -5.61 16 29 H 0.07 1.15 6.65 -51.93 -0.35 0.81 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 1.07 6.84 -51.93 -0.36 0.72 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.37 9.79 6.63 -40.82 -0.27 9.52 16 35 H 0.26 7.95 6.77 -40.82 -0.28 7.67 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 38 H 0.16 2.42 3.45 -95.31 -0.33 2.09 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.19 1.83 8.04 -52.49 -0.42 1.41 16 41 H 0.14 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.10 0.45 7.21 -51.93 -0.37 0.07 16 43 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 368.92 15.07 5.56 5.56 Total: -1.00 -33.72 368.92 -10.74 -44.46 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -6.65 Total: 10.18 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -2.24 Total: -7.82 kcal Atomic # 7 Polarization: -63.70 SS G_CDS: -0.06 Total: -63.77 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.06 Total: -9.21 kcal Atomic # 14 Polarization: 26.37 SS G_CDS: -5.09 Total: 21.28 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.33 Total: -0.68 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.72 -10.74 -44.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044881370.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.272 kcal (2) G-P(sol) polarization free energy of solvation -33.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds