Wall clock time and date at job start Tue Mar 31 2020 19:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.78314 * 2 1 4 4 C 1.54325 * 110.72176 * 123.24796 * 2 1 3 5 5 N 1.47019 * 107.27585 * 140.55157 * 4 2 1 6 6 C 1.34776 * 125.64928 * 181.01774 * 5 4 2 7 7 O 1.21686 * 119.99826 * 356.33469 * 6 5 4 8 8 C 1.46686 * 119.99900 * 176.32425 * 6 5 4 9 9 C 1.35658 * 126.12893 * 186.48090 * 8 6 5 10 10 N 1.30947 * 114.18865 * 179.78613 * 9 8 6 11 11 C 1.29426 * 117.36317 * 0.53335 * 10 9 8 12 12 C 1.50697 * 124.80551 * 179.68414 * 11 10 9 13 13 C 1.52998 * 109.47294 * 90.02111 * 12 11 10 14 14 C 1.53005 * 117.50037 * 243.62597 * 13 12 11 15 15 C 1.53004 * 117.50173 * 175.00225 * 13 12 11 16 16 S 1.70957 * 110.39212 * 359.70419 * 11 10 9 17 17 C 1.47426 * 108.70101 * 1.06116 * 5 4 2 18 18 C 1.54916 * 104.83219 * 335.86828 * 17 5 4 19 19 H 1.08995 * 111.00281 * 155.12373 * 18 17 5 20 20 N 1.46500 * 111.00469 * 278.94124 * 18 17 5 21 21 C 1.36938 * 119.99759 * 273.54782 * 20 18 17 22 22 H 1.08007 * 119.99787 * 359.97438 * 21 20 18 23 23 C 1.38806 * 120.00278 * 180.02562 * 21 20 18 24 24 N 1.31624 * 119.99857 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00335 * 180.27258 * 23 21 20 26 26 H 1.48500 * 109.47129 * 179.72523 * 25 23 21 27 27 H 1.48501 * 109.46917 * 299.72305 * 25 23 21 28 28 H 1.48497 * 109.47015 * 59.72143 * 25 23 21 29 29 H 1.09002 * 109.47630 * 183.23445 * 1 2 3 30 30 H 1.08999 * 109.46952 * 303.23407 * 1 2 3 31 31 H 1.08998 * 109.47325 * 63.23203 * 1 2 3 32 32 H 1.09006 * 109.88105 * 21.13017 * 4 2 1 33 33 H 1.09003 * 110.00917 * 260.04383 * 4 2 1 34 34 H 1.08003 * 122.90587 * 359.97438 * 9 8 6 35 35 H 1.08995 * 109.47345 * 210.02650 * 12 11 10 36 36 H 1.09005 * 109.46855 * 330.02312 * 12 11 10 37 37 H 1.09002 * 115.54961 * 29.33192 * 13 12 11 38 38 H 1.09001 * 117.49565 * 359.97438 * 14 13 12 39 39 H 1.08997 * 117.49895 * 145.01835 * 14 13 12 40 40 H 1.08998 * 117.49815 * 214.98022 * 15 13 12 41 41 H 1.09006 * 117.49472 * 359.97438 * 15 13 12 42 42 H 1.09004 * 110.36153 * 217.03318 * 17 5 4 43 43 H 1.08997 * 110.46461 * 94.75666 * 17 5 4 44 44 H 0.97000 * 120.00390 * 93.54444 * 20 18 17 45 45 H 0.97003 * 120.00064 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0760 -0.7914 1.2071 5 7 3.2444 -1.5509 0.7388 6 6 3.9922 -2.3838 1.4895 7 8 3.7600 -2.5059 2.6777 8 6 5.0860 -3.1433 0.8741 9 6 5.8330 -4.1014 1.4776 10 7 6.7481 -4.6332 0.7066 11 6 6.8377 -4.1872 -0.5050 12 6 7.8310 -4.6726 -1.5290 13 6 7.2259 -5.8380 -2.3142 14 6 7.9065 -7.2026 -2.1901 15 6 8.0365 -6.3978 -3.4849 16 16 5.6701 -2.9690 -0.7792 17 6 3.4632 -1.2498 -0.6877 18 6 2.0788 -0.7954 -1.2139 19 1 2.1849 -0.1523 -2.0875 20 7 1.2269 -1.9487 -1.5146 21 6 1.2980 -2.5508 -2.7424 22 1 1.9819 -2.1752 -3.4893 23 6 0.4905 -3.6432 -3.0276 24 7 -0.3432 -4.1006 -2.1176 25 14 0.5930 -4.4693 -4.6999 26 1 -0.3599 -5.6072 -4.7491 27 1 0.2469 -3.4876 -5.7589 28 1 1.9735 -4.9698 -4.9209 29 1 -0.3634 -1.0260 0.0580 30 1 -0.3633 0.5632 0.8596 31 1 -0.3634 0.4628 -0.9175 32 1 1.3129 -1.4760 1.5774 33 1 2.3736 -0.1046 1.9996 34 1 5.6838 -4.4018 2.5043 35 1 8.0734 -3.8600 -2.2138 36 1 8.7384 -5.0062 -1.0254 37 1 6.1406 -5.8238 -2.4148 38 1 8.7857 -7.2701 -1.5494 39 1 7.2691 -8.0866 -2.2089 40 1 7.4846 -6.7523 -4.3554 41 1 9.0009 -5.9355 -3.6959 42 1 3.7959 -2.1427 -1.2171 43 1 4.1935 -0.4486 -0.8004 44 1 0.6125 -2.2858 -0.8440 45 1 -0.9078 -4.8638 -2.3170 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054926194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:35 Heat of formation + Delta-G solvation = 49.850838 kcal Electronic energy + Delta-G solvation = -26887.654594 eV Core-core repulsion = 23226.115426 eV Total energy + Delta-G solvation = -3661.539169 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.09334 -39.43454 -37.72118 -37.32065 -33.97241 -32.64876 -31.74175 -30.58913 -28.85625 -27.90042 -26.23639 -24.42497 -23.93078 -22.50611 -22.33476 -21.11020 -20.82057 -19.37844 -18.60652 -18.29280 -17.43262 -16.30032 -16.18744 -15.78224 -15.32327 -15.02799 -14.74287 -14.46768 -14.28740 -13.87868 -13.62900 -13.40849 -13.19603 -13.03901 -12.89261 -12.55055 -12.27940 -12.02438 -11.86085 -11.69161 -11.64994 -11.29996 -11.20174 -10.98577 -10.84349 -10.62031 -10.55859 -10.38354 -10.14379 -10.05477 -9.92457 -9.74042 -9.44452 -9.24658 -9.08297 -8.81935 -8.28599 -7.11809 -5.89316 -3.19957 0.39271 1.32993 1.75490 2.60813 3.17633 3.34884 3.39671 3.41685 3.44023 3.63063 4.03350 4.46304 4.59277 4.65563 4.74194 4.81361 5.01585 5.02475 5.08509 5.23539 5.31991 5.43362 5.44609 5.48077 5.49246 5.53168 5.53865 5.65054 5.76647 5.80869 5.87609 5.97661 6.05980 6.09401 6.10036 6.19658 6.25202 6.27518 6.37712 6.49990 6.64321 6.84465 7.56857 7.67339 7.78706 8.27910 8.31575 9.40008 9.93879 10.28568 11.32433 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.008494 B = 0.005033 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3295.758839 B = 5562.184373 C = 8047.254130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.112 4.112 3 H 0.082 0.918 4 C 0.119 3.881 5 N -0.597 5.597 6 C 0.608 3.392 7 O -0.541 6.541 8 C -0.285 4.285 9 C 0.111 3.889 10 N -0.479 5.479 11 C 0.027 3.973 12 C -0.012 4.012 13 C -0.152 4.152 14 C -0.173 4.173 15 C -0.176 4.176 16 S 0.214 5.786 17 C 0.056 3.944 18 C 0.176 3.824 19 H 0.075 0.925 20 N -0.708 5.708 21 C -0.250 4.250 22 H 0.072 0.928 23 C -0.005 4.005 24 N -0.927 5.927 25 Si 0.905 3.095 26 H -0.291 1.291 27 H -0.284 1.284 28 H -0.285 1.285 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.184 0.816 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.388 0.612 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.215 4.302 0.384 14.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.132 4.132 3 H 0.101 0.899 4 C -0.003 4.003 5 N -0.328 5.328 6 C 0.396 3.604 7 O -0.421 6.421 8 C -0.409 4.409 9 C -0.047 4.047 10 N -0.194 5.194 11 C -0.247 4.247 12 C -0.053 4.053 13 C -0.171 4.171 14 C -0.210 4.210 15 C -0.213 4.213 16 S 0.473 5.527 17 C -0.072 4.072 18 C 0.063 3.937 19 H 0.093 0.907 20 N -0.348 5.348 21 C -0.381 4.381 22 H 0.090 0.910 23 C -0.202 4.202 24 N -0.573 5.573 25 Si 0.735 3.265 26 H -0.217 1.217 27 H -0.211 1.211 28 H -0.211 1.211 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.200 0.800 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.224 0.776 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 14.253 4.313 0.135 14.892 hybrid contribution -0.331 -1.123 0.197 1.187 sum 13.922 3.191 0.332 14.287 Atomic orbital electron populations 1.21606 0.93211 1.03075 1.01095 1.22512 0.97288 0.98583 0.94837 0.89938 1.21998 0.87260 0.94388 0.96684 1.48128 1.29565 1.43450 1.11677 1.16325 0.80316 0.78458 0.85314 1.90796 1.70586 1.66372 1.14386 1.25707 1.07554 1.09278 0.98353 1.22055 0.89919 0.91852 1.00877 1.66230 1.21781 1.27963 1.03380 1.27708 1.01283 1.00018 0.95680 1.19829 0.95076 0.97320 0.93037 1.22224 0.99404 0.94286 1.01221 1.23030 1.02873 0.94836 1.00257 1.23002 1.01689 1.04129 0.92483 1.84497 1.24291 1.34686 1.09252 1.23739 1.02232 1.00498 0.80724 1.21324 0.87862 0.90040 0.94451 0.90708 1.42403 1.44893 1.32335 1.15209 1.19149 1.18692 1.09436 0.90832 0.90994 1.24748 0.98809 0.98743 0.97897 1.69647 1.26907 1.27292 1.33493 0.86317 0.77321 0.79046 0.83787 1.21669 1.21073 1.21138 0.91204 0.93519 0.91961 0.91109 0.91846 0.79958 0.89148 0.88816 0.87286 0.88574 0.88767 0.88508 0.88606 0.89695 0.91818 0.77621 0.93247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.71 37.16 0.32 -1.65 16 2 C -0.11 -1.65 3.42 -88.78 -0.30 -1.95 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.12 1.92 6.46 -3.07 -0.02 1.90 16 5 N -0.60 -10.51 3.33 -172.05 -0.57 -11.09 16 6 C 0.61 11.57 7.81 -12.85 -0.10 11.47 16 7 O -0.54 -11.50 17.20 5.20 0.09 -11.41 16 8 C -0.28 -4.86 6.38 -37.10 -0.24 -5.10 16 9 C 0.11 1.81 11.10 -18.85 -0.21 1.60 16 10 N -0.48 -7.48 10.51 -11.50 -0.12 -7.60 16 11 C 0.03 0.37 6.59 -13.29 -0.09 0.28 16 12 C -0.01 -0.13 6.07 -27.89 -0.17 -0.30 16 13 C -0.15 -1.68 5.72 -90.62 -0.52 -2.19 16 14 C -0.17 -1.71 10.18 -26.73 -0.27 -1.98 16 15 C -0.18 -1.58 10.25 -26.73 -0.27 -1.85 16 16 S 0.21 3.08 18.75 -107.50 -2.02 1.06 16 17 C 0.06 0.92 5.34 -2.52 -0.01 0.90 16 18 C 0.18 3.08 3.44 -65.78 -0.23 2.85 16 19 H 0.08 1.24 8.13 -51.93 -0.42 0.82 16 20 N -0.71 -16.00 4.74 -51.35 -0.24 -16.24 16 21 C -0.25 -6.34 9.98 -15.06 -0.15 -6.49 16 22 H 0.07 1.74 7.83 -52.48 -0.41 1.32 16 23 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 24 N -0.93 -26.79 13.06 55.49 0.72 -26.06 16 25 Si 0.90 21.29 29.55 -169.99 -5.02 16.26 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 29 H 0.07 1.25 6.35 -51.93 -0.33 0.92 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.26 7.77 -51.93 -0.40 0.86 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.18 2.75 8.06 -52.48 -0.42 2.33 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.90 7.88 -51.93 -0.41 0.49 16 37 H 0.11 1.42 8.07 -51.93 -0.42 1.00 16 38 H 0.10 0.86 8.03 -51.93 -0.42 0.45 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 1.53 4.96 -29.25 -0.15 1.38 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.39 9.60 6.08 -40.82 -0.25 9.36 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 380.16 15.07 5.73 5.73 Total: -1.00 -30.98 380.16 -10.35 -41.33 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -6.57 Total: 10.74 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -2.35 Total: -2.74 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -0.21 Total: -60.99 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -2.02 Total: 1.06 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.98 -10.35 -41.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054926194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.186 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds