Wall clock time and date at job start Tue Mar 31 2020 19:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.78314 * 2 1 4 4 C 1.54325 * 110.72176 * 123.24796 * 2 1 3 5 5 N 1.47019 * 107.27585 * 140.55157 * 4 2 1 6 6 C 1.34776 * 125.64928 * 181.01774 * 5 4 2 7 7 O 1.21686 * 119.99826 * 356.33469 * 6 5 4 8 8 C 1.46686 * 119.99900 * 176.32425 * 6 5 4 9 9 C 1.35658 * 126.12893 * 186.48090 * 8 6 5 10 10 N 1.30947 * 114.18865 * 179.78613 * 9 8 6 11 11 C 1.29426 * 117.36317 * 0.53335 * 10 9 8 12 12 C 1.50697 * 124.80551 * 179.68414 * 11 10 9 13 13 C 1.52998 * 109.47294 * 90.02111 * 12 11 10 14 14 C 1.53005 * 117.50037 * 243.62597 * 13 12 11 15 15 C 1.53004 * 117.50173 * 175.00225 * 13 12 11 16 16 S 1.70957 * 110.39212 * 359.70419 * 11 10 9 17 17 C 1.47426 * 108.70101 * 1.06116 * 5 4 2 18 18 C 1.54916 * 104.83219 * 335.86828 * 17 5 4 19 19 H 1.08995 * 111.00281 * 155.12373 * 18 17 5 20 20 N 1.46500 * 111.00469 * 278.94124 * 18 17 5 21 21 C 1.36938 * 119.99759 * 273.54782 * 20 18 17 22 22 H 1.08007 * 119.99787 * 359.97438 * 21 20 18 23 23 C 1.38806 * 120.00278 * 180.02562 * 21 20 18 24 24 N 1.31624 * 119.99857 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00335 * 180.27258 * 23 21 20 26 26 H 1.48500 * 109.47129 * 179.72523 * 25 23 21 27 27 H 1.48501 * 109.46917 * 299.72305 * 25 23 21 28 28 H 1.48497 * 109.47015 * 59.72143 * 25 23 21 29 29 H 1.09002 * 109.47630 * 183.23445 * 1 2 3 30 30 H 1.08999 * 109.46952 * 303.23407 * 1 2 3 31 31 H 1.08998 * 109.47325 * 63.23203 * 1 2 3 32 32 H 1.09006 * 109.88105 * 21.13017 * 4 2 1 33 33 H 1.09003 * 110.00917 * 260.04383 * 4 2 1 34 34 H 1.08003 * 122.90587 * 359.97438 * 9 8 6 35 35 H 1.08995 * 109.47345 * 210.02650 * 12 11 10 36 36 H 1.09005 * 109.46855 * 330.02312 * 12 11 10 37 37 H 1.09002 * 115.54961 * 29.33192 * 13 12 11 38 38 H 1.09001 * 117.49565 * 359.97438 * 14 13 12 39 39 H 1.08997 * 117.49895 * 145.01835 * 14 13 12 40 40 H 1.08998 * 117.49815 * 214.98022 * 15 13 12 41 41 H 1.09006 * 117.49472 * 359.97438 * 15 13 12 42 42 H 1.09004 * 110.36153 * 217.03318 * 17 5 4 43 43 H 1.08997 * 110.46461 * 94.75666 * 17 5 4 44 44 H 0.97000 * 120.00390 * 93.54444 * 20 18 17 45 45 H 0.97003 * 120.00064 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0760 -0.7914 1.2071 5 7 3.2444 -1.5509 0.7388 6 6 3.9922 -2.3838 1.4895 7 8 3.7600 -2.5059 2.6777 8 6 5.0860 -3.1433 0.8741 9 6 5.8330 -4.1014 1.4776 10 7 6.7481 -4.6332 0.7066 11 6 6.8377 -4.1872 -0.5050 12 6 7.8310 -4.6726 -1.5290 13 6 7.2259 -5.8380 -2.3142 14 6 7.9065 -7.2026 -2.1901 15 6 8.0365 -6.3978 -3.4849 16 16 5.6701 -2.9690 -0.7792 17 6 3.4632 -1.2498 -0.6877 18 6 2.0788 -0.7954 -1.2139 19 1 2.1849 -0.1523 -2.0875 20 7 1.2269 -1.9487 -1.5146 21 6 1.2980 -2.5508 -2.7424 22 1 1.9819 -2.1752 -3.4893 23 6 0.4905 -3.6432 -3.0276 24 7 -0.3432 -4.1006 -2.1176 25 14 0.5930 -4.4693 -4.6999 26 1 -0.3599 -5.6072 -4.7491 27 1 0.2469 -3.4876 -5.7589 28 1 1.9735 -4.9698 -4.9209 29 1 -0.3634 -1.0260 0.0580 30 1 -0.3633 0.5632 0.8596 31 1 -0.3634 0.4628 -0.9175 32 1 1.3129 -1.4760 1.5774 33 1 2.3736 -0.1046 1.9996 34 1 5.6838 -4.4018 2.5043 35 1 8.0734 -3.8600 -2.2138 36 1 8.7384 -5.0062 -1.0254 37 1 6.1406 -5.8238 -2.4148 38 1 8.7857 -7.2701 -1.5494 39 1 7.2691 -8.0866 -2.2089 40 1 7.4846 -6.7523 -4.3554 41 1 9.0009 -5.9355 -3.6959 42 1 3.7959 -2.1427 -1.2171 43 1 4.1935 -0.4486 -0.8004 44 1 0.6125 -2.2858 -0.8440 45 1 -0.9078 -4.8638 -2.3170 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054926194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:34 Heat of formation + Delta-G solvation = 31.154851 kcal Electronic energy + Delta-G solvation = -26888.465313 eV Core-core repulsion = 23226.115426 eV Total energy + Delta-G solvation = -3662.349887 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.42822 -40.67550 -38.99055 -38.31839 -35.70989 -34.11131 -32.88514 -32.23960 -30.00502 -29.44114 -27.48675 -25.89445 -25.45737 -23.72517 -23.22542 -22.35406 -21.74348 -20.73677 -19.82395 -19.66297 -19.14657 -17.67753 -17.51581 -17.00879 -16.58454 -16.33440 -16.03628 -15.74174 -15.67375 -15.42736 -14.80424 -14.59790 -14.56040 -14.35724 -14.11127 -13.78008 -13.58123 -13.38333 -13.20165 -12.93538 -12.78510 -12.56399 -12.54361 -12.33984 -12.30546 -12.20749 -12.04894 -11.50831 -11.46611 -11.42034 -11.29302 -10.99211 -10.90786 -10.63015 -10.43115 -10.08222 -9.64166 -8.97911 -7.92260 -5.20444 -0.82308 0.14846 0.56506 1.33359 1.48390 1.49801 1.55582 1.82696 2.08323 2.56792 2.84639 3.00654 3.34321 3.39119 3.72933 3.79628 3.81815 3.86409 3.89483 4.00507 4.07204 4.13770 4.19226 4.36099 4.50107 4.55967 4.61360 4.64634 4.67070 4.71942 4.79698 4.81309 4.92163 4.96670 5.00656 5.05653 5.13843 5.19328 5.24971 5.28223 5.33659 5.54224 5.59364 6.28180 6.31009 6.56455 6.88740 7.36250 8.10737 8.32756 9.30915 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.008494 B = 0.005033 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3295.758839 B = 5562.184373 C = 8047.254130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.096 4.096 3 H 0.125 0.875 4 C 0.115 3.885 5 N -0.599 5.599 6 C 0.600 3.400 7 O -0.577 6.577 8 C -0.319 4.319 9 C 0.112 3.888 10 N -0.497 5.497 11 C 0.037 3.963 12 C -0.010 4.010 13 C -0.171 4.171 14 C -0.179 4.179 15 C -0.156 4.156 16 S 0.242 5.758 17 C 0.060 3.940 18 C 0.165 3.835 19 H 0.095 0.905 20 N -0.721 5.721 21 C -0.232 4.232 22 H 0.087 0.913 23 C -0.073 4.073 24 N -0.970 5.970 25 Si 0.961 3.039 26 H -0.306 1.306 27 H -0.273 1.273 28 H -0.277 1.277 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.185 0.815 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.119 0.881 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.374 0.626 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.749 6.076 -1.356 17.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.115 4.115 3 H 0.143 0.857 4 C -0.007 4.007 5 N -0.330 5.330 6 C 0.389 3.611 7 O -0.460 6.460 8 C -0.443 4.443 9 C -0.048 4.048 10 N -0.212 5.212 11 C -0.236 4.236 12 C -0.051 4.051 13 C -0.191 4.191 14 C -0.216 4.216 15 C -0.193 4.193 16 S 0.501 5.499 17 C -0.067 4.067 18 C 0.054 3.946 19 H 0.112 0.888 20 N -0.360 5.360 21 C -0.364 4.364 22 H 0.105 0.895 23 C -0.265 4.265 24 N -0.621 5.621 25 Si 0.791 3.209 26 H -0.233 1.233 27 H -0.199 1.199 28 H -0.203 1.203 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.201 0.799 35 H 0.135 0.865 36 H 0.127 0.873 37 H 0.101 0.899 38 H 0.125 0.875 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.137 0.863 42 H 0.088 0.912 43 H 0.120 0.880 44 H 0.207 0.793 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 16.827 6.157 -1.647 17.993 hybrid contribution -1.040 -1.637 0.736 2.074 sum 15.787 4.520 -0.911 16.446 Atomic orbital electron populations 1.21536 0.93601 1.01070 1.02261 1.22521 0.96832 0.99870 0.92318 0.85725 1.22111 0.86358 0.94189 0.98019 1.48252 1.29483 1.43119 1.12123 1.16639 0.80787 0.78520 0.85137 1.90756 1.71833 1.67552 1.15834 1.25644 1.08105 1.10310 1.00285 1.22197 0.89806 0.91529 1.01232 1.66305 1.22126 1.28550 1.04188 1.28358 1.00829 0.98835 0.95591 1.20045 0.94420 0.98012 0.92586 1.22149 0.98300 0.95244 1.03426 1.23114 1.02986 0.94043 1.01411 1.23099 1.02036 1.02498 0.91677 1.84217 1.23859 1.34663 1.07117 1.23733 1.02181 1.01080 0.79687 1.21665 0.87668 0.88873 0.96418 0.88765 1.42592 1.45641 1.33711 1.14096 1.19605 1.16825 1.08183 0.91739 0.89527 1.25468 0.99723 1.00383 1.00905 1.69821 1.28777 1.28062 1.35433 0.85388 0.77048 0.77781 0.80675 1.23333 1.19920 1.20322 0.94964 0.90906 0.91976 0.93791 0.89970 0.79853 0.86465 0.87344 0.89934 0.87457 0.89489 0.88427 0.86290 0.91179 0.87954 0.79301 0.94435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.65 8.71 71.98 0.63 -3.02 16 2 C -0.10 -2.58 3.42 -9.60 -0.03 -2.61 16 3 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 4 C 0.12 3.62 6.46 86.73 0.56 4.18 16 5 N -0.60 -20.69 3.33 -816.46 -2.72 -23.40 16 6 C 0.60 23.10 7.81 86.45 0.68 23.78 16 7 O -0.58 -25.24 17.20 -4.30 -0.07 -25.32 16 8 C -0.32 -10.92 6.38 23.88 0.15 -10.77 16 9 C 0.11 3.67 11.10 84.23 0.93 4.60 16 10 N -0.50 -15.19 10.51 -190.30 -2.00 -17.19 16 11 C 0.04 0.96 6.59 88.46 0.58 1.55 16 12 C -0.01 -0.19 6.07 29.85 0.18 -0.01 16 13 C -0.17 -3.48 5.72 -10.79 -0.06 -3.54 16 14 C -0.18 -3.20 10.18 30.60 0.31 -2.89 16 15 C -0.16 -2.37 10.25 30.60 0.31 -2.06 16 16 S 0.24 6.61 18.75 -56.49 -1.06 5.55 16 17 C 0.06 1.83 5.34 86.86 0.46 2.29 16 18 C 0.16 5.38 3.44 46.39 0.16 5.54 16 19 H 0.09 2.78 8.13 -2.39 -0.02 2.76 16 20 N -0.72 -32.45 4.74 -316.36 -1.50 -33.95 16 21 C -0.23 -11.60 9.98 84.03 0.84 -10.76 16 22 H 0.09 4.00 7.83 -2.91 -0.02 3.98 16 23 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 24 N -0.97 -58.06 13.06 21.65 0.28 -57.78 16 25 Si 0.96 44.06 29.55 68.60 2.03 46.09 16 26 H -0.31 -14.69 7.11 99.48 0.71 -13.99 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 28 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 29 H 0.03 1.17 6.35 -2.39 -0.02 1.15 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.04 1.61 7.77 -2.38 -0.02 1.59 16 33 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.18 5.76 8.06 -2.91 -0.02 5.73 16 35 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.11 1.73 7.88 -2.38 -0.02 1.72 16 37 H 0.08 2.12 8.07 -2.39 -0.02 2.10 16 38 H 0.11 1.67 8.03 -2.39 -0.02 1.65 16 39 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.07 2.41 4.96 -16.80 -0.08 2.32 16 43 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.37 19.02 6.08 -92.71 -0.56 18.46 16 45 H 0.25 14.65 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -69.66 380.16 1.51 -68.16 By element: Atomic # 1 Polarization: 34.67 SS G_CDS: 0.37 Total: 35.04 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 6.17 Total: 2.80 kcal Atomic # 7 Polarization: -126.39 SS G_CDS: -5.93 Total: -132.32 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.07 Total: -25.32 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: 6.61 SS G_CDS: -1.06 Total: 5.55 kcal Total: -69.66 1.51 -68.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054926194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.311 kcal (2) G-P(sol) polarization free energy of solvation -69.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds