Wall clock time and date at job start Tue Mar 31 2020 19:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.92004 * 2 1 4 4 C 1.54903 * 111.00620 * 236.09723 * 2 1 3 5 5 N 1.47425 * 104.83589 * 204.92169 * 4 2 1 6 6 C 1.34780 * 125.65114 * 204.16877 * 5 4 2 7 7 O 1.21687 * 119.99666 * 355.09994 * 6 5 4 8 8 C 1.46687 * 119.99895 * 175.10445 * 6 5 4 9 9 C 1.35667 * 126.12288 * 185.44287 * 8 6 5 10 10 N 1.30943 * 114.18542 * 180.02562 * 9 8 6 11 11 C 1.29430 * 117.36326 * 359.97438 * 10 9 8 12 12 C 1.50703 * 124.80053 * 180.02562 * 11 10 9 13 13 C 1.52994 * 109.47089 * 89.98053 * 12 11 10 14 14 C 1.53009 * 117.49887 * 243.74687 * 13 12 11 15 15 C 1.53006 * 117.50077 * 175.08483 * 13 12 11 16 16 S 1.70952 * 110.39228 * 359.72809 * 11 10 9 17 17 C 1.47025 * 108.70158 * 24.12312 * 5 4 2 18 18 C 1.54320 * 107.27082 * 358.94407 * 17 5 4 19 19 H 1.09001 * 110.71573 * 96.35107 * 18 17 5 20 20 N 1.46497 * 110.72215 * 219.44249 * 18 17 5 21 21 C 1.36942 * 119.99943 * 273.27361 * 20 18 17 22 22 H 1.07997 * 119.99972 * 0.02562 * 21 20 18 23 23 C 1.38816 * 119.99851 * 179.97438 * 21 20 18 24 24 N 1.31619 * 120.00074 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99753 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47499 * 59.99878 * 25 23 21 27 27 H 1.48501 * 109.47260 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47214 * 299.99661 * 25 23 21 29 29 H 1.08997 * 109.46965 * 296.10142 * 1 2 3 30 30 H 1.09001 * 109.47007 * 56.10124 * 1 2 3 31 31 H 1.08993 * 109.47194 * 176.09938 * 1 2 3 32 32 H 1.09000 * 110.36946 * 86.07835 * 4 2 1 33 33 H 1.09010 * 110.46069 * 323.80266 * 4 2 1 34 34 H 1.07993 * 122.90802 * 359.97438 * 9 8 6 35 35 H 1.09007 * 109.46907 * 209.97278 * 12 11 10 36 36 H 1.09001 * 109.47537 * 329.97640 * 12 11 10 37 37 H 1.08998 * 115.55484 * 29.40945 * 13 12 11 38 38 H 1.09001 * 117.49318 * 359.97438 * 14 13 12 39 39 H 1.08992 * 117.50264 * 145.01998 * 14 13 12 40 40 H 1.09002 * 117.49799 * 214.97370 * 15 13 12 41 41 H 1.08997 * 117.49409 * 359.97438 * 15 13 12 42 42 H 1.09008 * 109.88121 * 239.52658 * 17 5 4 43 43 H 1.08998 * 109.87883 * 118.36722 * 17 5 4 44 44 H 0.97000 * 120.00230 * 93.54788 * 20 18 17 45 45 H 0.96994 * 119.99786 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0853 -0.8066 -1.2002 5 7 3.4271 -1.2432 -0.7732 6 6 4.4481 -1.5604 -1.5939 7 8 4.2759 -1.5838 -2.7983 8 6 5.7669 -1.8774 -1.0351 9 6 6.9005 -2.1102 -1.7431 10 7 7.9496 -2.3727 -1.0049 11 6 7.7871 -2.3787 0.2791 12 6 8.8760 -2.6586 1.2826 13 6 9.5630 -1.3472 1.6687 14 6 11.0425 -1.1925 1.3102 15 6 10.6258 -1.4033 2.7680 16 16 6.1642 -2.0162 0.6759 17 6 3.4674 -1.2742 0.6961 18 6 2.0861 -0.8079 1.2023 19 1 1.4478 -1.6632 1.4240 20 7 2.2286 0.0496 2.3815 21 6 2.2976 -0.5089 3.6299 22 1 2.2474 -1.5816 3.7451 23 6 2.4331 0.3036 4.7473 24 7 2.4947 1.6108 4.6068 25 14 2.5279 -0.4584 6.4501 26 1 3.7013 -1.3657 6.5219 27 1 2.6692 0.6157 7.4659 28 1 1.2879 -1.2308 6.7166 29 1 -0.3633 0.4521 0.9228 30 1 -0.3633 0.5732 -0.8530 31 1 -0.3633 -1.0252 -0.0699 32 1 2.1560 -0.1720 -2.0836 33 1 1.4524 -1.6704 -1.4043 34 1 6.9345 -2.0823 -2.8222 35 1 8.4420 -3.1167 2.1715 36 1 9.6081 -3.3371 0.8447 37 1 8.9373 -0.4561 1.6187 38 1 11.5263 -2.0252 0.7996 39 1 11.3900 -0.1996 1.0247 40 1 10.6994 -0.5490 3.4410 41 1 10.8351 -2.3745 3.2164 42 1 4.2426 -0.5997 1.0600 43 1 3.6650 -2.2894 1.0401 44 1 2.2700 1.0132 2.2783 45 1 2.5898 2.1785 5.3875 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054926197.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:44 Heat of formation + Delta-G solvation = 44.541173 kcal Electronic energy + Delta-G solvation = -26401.326236 eV Core-core repulsion = 22739.556823 eV Total energy + Delta-G solvation = -3661.769413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.19229 -39.49781 -37.75447 -37.37369 -34.18144 -32.76842 -31.82149 -30.81560 -28.95298 -27.66906 -26.37267 -24.55954 -23.98989 -22.55832 -22.00256 -21.10013 -20.86308 -20.07866 -18.70384 -18.26951 -17.21991 -16.56704 -16.19190 -15.87266 -15.52071 -15.10827 -14.71946 -14.60620 -14.20049 -13.72025 -13.65104 -13.49335 -13.31716 -13.23300 -12.93305 -12.64909 -12.48507 -12.21359 -11.77376 -11.71794 -11.69969 -11.41995 -11.20907 -11.10400 -10.86739 -10.70372 -10.62033 -10.37246 -10.20901 -10.10818 -10.06988 -9.80881 -9.52437 -9.40894 -9.07291 -8.97203 -8.40324 -7.19238 -5.92719 -3.24353 0.27708 1.24635 1.67901 2.47673 3.05248 3.26889 3.34094 3.39621 3.40450 3.57400 3.94560 4.43694 4.53285 4.58870 4.68187 4.74536 4.94397 4.98176 5.02787 5.12846 5.23072 5.35427 5.42443 5.44726 5.46786 5.48346 5.53282 5.61688 5.70914 5.73910 5.78599 5.91075 5.92395 6.01467 6.08263 6.08579 6.13421 6.23887 6.35700 6.40691 6.52892 6.74990 7.53485 7.56731 7.66822 8.15824 8.24242 9.36494 9.88549 10.23843 11.28843 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.007983 B = 0.004534 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3506.594489 B = 6174.738547 C = 9215.016774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.085 0.915 4 C 0.117 3.883 5 N -0.608 5.608 6 C 0.607 3.393 7 O -0.541 6.541 8 C -0.296 4.296 9 C 0.113 3.887 10 N -0.480 5.480 11 C 0.031 3.969 12 C -0.015 4.015 13 C -0.150 4.150 14 C -0.174 4.174 15 C -0.175 4.175 16 S 0.224 5.776 17 C 0.058 3.942 18 C 0.183 3.817 19 H 0.070 0.930 20 N -0.709 5.709 21 C -0.253 4.253 22 H 0.072 0.928 23 C -0.004 4.004 24 N -0.928 5.928 25 Si 0.906 3.094 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.284 1.284 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.184 0.816 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.388 0.612 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.944 -6.733 -7.276 13.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 H 0.104 0.896 4 C -0.006 4.006 5 N -0.340 5.340 6 C 0.395 3.605 7 O -0.421 6.421 8 C -0.421 4.421 9 C -0.046 4.046 10 N -0.195 5.195 11 C -0.242 4.242 12 C -0.055 4.055 13 C -0.170 4.170 14 C -0.210 4.210 15 C -0.212 4.212 16 S 0.483 5.517 17 C -0.069 4.069 18 C 0.070 3.930 19 H 0.088 0.912 20 N -0.349 5.349 21 C -0.383 4.383 22 H 0.090 0.910 23 C -0.201 4.201 24 N -0.574 5.574 25 Si 0.736 3.264 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.211 1.211 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.201 0.799 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.125 0.875 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.222 0.778 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.893 -6.864 -6.956 13.213 hybrid contribution 0.277 0.010 0.031 0.279 sum 9.169 -6.853 -6.924 13.379 Atomic orbital electron populations 1.21608 0.93561 1.01681 1.02255 1.22645 0.96549 0.99833 0.94322 0.89631 1.22309 0.82029 0.98294 0.97926 1.48362 1.12115 1.65580 1.07972 1.16380 0.81593 0.77187 0.85374 1.90800 1.83239 1.54359 1.13743 1.25779 1.00252 1.18939 0.97085 1.22074 0.85151 0.95787 1.01572 1.66249 1.31833 1.17529 1.03850 1.27664 1.00483 1.01229 0.94836 1.19866 0.93852 0.96887 0.94922 1.22191 0.91946 0.98468 1.04414 1.23049 0.96734 1.03186 0.98079 1.23024 1.02910 1.03482 0.91794 1.84936 1.02699 1.60276 1.03790 1.23607 1.04118 1.01592 0.77616 1.21198 0.90765 0.94018 0.87023 0.91211 1.42366 1.86743 1.05321 1.00463 1.19184 1.43731 0.91950 0.83464 0.90958 1.24751 1.02056 0.95315 0.97960 1.69644 1.56000 1.02338 1.29447 0.86300 0.78023 0.77945 0.84096 1.21053 1.21608 1.21081 0.91195 0.93023 0.92736 0.90633 0.91219 0.79945 0.88911 0.88697 0.87455 0.88558 0.88810 0.88435 0.88514 0.90075 0.91722 0.77758 0.93201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 9.31 37.16 0.35 -1.41 16 2 C -0.11 -1.70 3.25 -88.47 -0.29 -1.99 16 3 H 0.09 1.36 8.00 -51.93 -0.42 0.94 16 4 C 0.12 1.69 6.36 -2.53 -0.02 1.68 16 5 N -0.61 -9.85 3.33 -172.05 -0.57 -10.42 16 6 C 0.61 10.41 7.81 -12.85 -0.10 10.31 16 7 O -0.54 -10.38 17.17 5.20 0.09 -10.30 16 8 C -0.30 -4.59 6.40 -37.09 -0.24 -4.83 16 9 C 0.11 1.65 11.10 -18.85 -0.21 1.44 16 10 N -0.48 -6.87 10.51 -11.50 -0.12 -6.99 16 11 C 0.03 0.41 6.59 -13.29 -0.09 0.32 16 12 C -0.01 -0.15 6.07 -27.88 -0.17 -0.32 16 13 C -0.15 -1.52 5.72 -90.62 -0.52 -2.04 16 14 C -0.17 -1.53 10.18 -26.68 -0.27 -1.81 16 15 C -0.17 -1.48 10.26 -26.68 -0.27 -1.75 16 16 S 0.22 3.12 18.68 -107.50 -2.01 1.11 16 17 C 0.06 0.97 4.95 -3.06 -0.02 0.96 16 18 C 0.18 3.23 3.06 -66.10 -0.20 3.03 16 19 H 0.07 1.23 8.02 -51.93 -0.42 0.82 16 20 N -0.71 -15.80 5.18 -51.65 -0.27 -16.06 16 21 C -0.25 -6.30 9.98 -15.06 -0.15 -6.45 16 22 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 23 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 16 24 N -0.93 -26.01 13.06 55.49 0.72 -25.29 16 25 Si 0.91 20.80 29.55 -169.99 -5.02 15.77 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.66 8.07 -51.93 -0.42 0.24 16 32 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 33 H 0.07 0.93 7.99 -51.92 -0.41 0.52 16 34 H 0.18 2.43 8.06 -52.49 -0.42 2.00 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 0.87 7.88 -51.93 -0.41 0.46 16 37 H 0.11 1.22 8.07 -51.93 -0.42 0.80 16 38 H 0.10 0.79 8.03 -51.93 -0.42 0.37 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.08 1.48 6.58 -51.92 -0.34 1.13 16 43 H 0.06 1.04 7.21 -51.93 -0.37 0.67 16 44 H 0.39 9.33 7.71 -40.82 -0.31 9.01 16 45 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 384.02 15.07 5.79 5.79 Total: -1.00 -29.44 384.02 -10.55 -39.98 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -6.87 Total: 9.47 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -2.29 Total: -3.06 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -0.24 Total: -58.77 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -2.01 Total: 1.11 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.44 -10.55 -39.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054926197.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.524 kcal (2) G-P(sol) polarization free energy of solvation -29.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds