Wall clock time and date at job start Tue Mar 31 2020 19:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.92004 * 2 1 4 4 C 1.54903 * 111.00620 * 236.09723 * 2 1 3 5 5 N 1.47425 * 104.83589 * 204.92169 * 4 2 1 6 6 C 1.34780 * 125.65114 * 204.16877 * 5 4 2 7 7 O 1.21687 * 119.99666 * 355.09994 * 6 5 4 8 8 C 1.46687 * 119.99895 * 175.10445 * 6 5 4 9 9 C 1.35667 * 126.12288 * 185.44287 * 8 6 5 10 10 N 1.30943 * 114.18542 * 180.02562 * 9 8 6 11 11 C 1.29430 * 117.36326 * 359.97438 * 10 9 8 12 12 C 1.50703 * 124.80053 * 180.02562 * 11 10 9 13 13 C 1.52994 * 109.47089 * 89.98053 * 12 11 10 14 14 C 1.53009 * 117.49887 * 243.74687 * 13 12 11 15 15 C 1.53006 * 117.50077 * 175.08483 * 13 12 11 16 16 S 1.70952 * 110.39228 * 359.72809 * 11 10 9 17 17 C 1.47025 * 108.70158 * 24.12312 * 5 4 2 18 18 C 1.54320 * 107.27082 * 358.94407 * 17 5 4 19 19 H 1.09001 * 110.71573 * 96.35107 * 18 17 5 20 20 N 1.46497 * 110.72215 * 219.44249 * 18 17 5 21 21 C 1.36942 * 119.99943 * 273.27361 * 20 18 17 22 22 H 1.07997 * 119.99972 * 0.02562 * 21 20 18 23 23 C 1.38816 * 119.99851 * 179.97438 * 21 20 18 24 24 N 1.31619 * 120.00074 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99753 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47499 * 59.99878 * 25 23 21 27 27 H 1.48501 * 109.47260 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47214 * 299.99661 * 25 23 21 29 29 H 1.08997 * 109.46965 * 296.10142 * 1 2 3 30 30 H 1.09001 * 109.47007 * 56.10124 * 1 2 3 31 31 H 1.08993 * 109.47194 * 176.09938 * 1 2 3 32 32 H 1.09000 * 110.36946 * 86.07835 * 4 2 1 33 33 H 1.09010 * 110.46069 * 323.80266 * 4 2 1 34 34 H 1.07993 * 122.90802 * 359.97438 * 9 8 6 35 35 H 1.09007 * 109.46907 * 209.97278 * 12 11 10 36 36 H 1.09001 * 109.47537 * 329.97640 * 12 11 10 37 37 H 1.08998 * 115.55484 * 29.40945 * 13 12 11 38 38 H 1.09001 * 117.49318 * 359.97438 * 14 13 12 39 39 H 1.08992 * 117.50264 * 145.01998 * 14 13 12 40 40 H 1.09002 * 117.49799 * 214.97370 * 15 13 12 41 41 H 1.08997 * 117.49409 * 359.97438 * 15 13 12 42 42 H 1.09008 * 109.88121 * 239.52658 * 17 5 4 43 43 H 1.08998 * 109.87883 * 118.36722 * 17 5 4 44 44 H 0.97000 * 120.00230 * 93.54788 * 20 18 17 45 45 H 0.96994 * 119.99786 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0853 -0.8066 -1.2002 5 7 3.4271 -1.2432 -0.7732 6 6 4.4481 -1.5604 -1.5939 7 8 4.2759 -1.5838 -2.7983 8 6 5.7669 -1.8774 -1.0351 9 6 6.9005 -2.1102 -1.7431 10 7 7.9496 -2.3727 -1.0049 11 6 7.7871 -2.3787 0.2791 12 6 8.8760 -2.6586 1.2826 13 6 9.5630 -1.3472 1.6687 14 6 11.0425 -1.1925 1.3102 15 6 10.6258 -1.4033 2.7680 16 16 6.1642 -2.0162 0.6759 17 6 3.4674 -1.2742 0.6961 18 6 2.0861 -0.8079 1.2023 19 1 1.4478 -1.6632 1.4240 20 7 2.2286 0.0496 2.3815 21 6 2.2976 -0.5089 3.6299 22 1 2.2474 -1.5816 3.7451 23 6 2.4331 0.3036 4.7473 24 7 2.4947 1.6108 4.6068 25 14 2.5279 -0.4584 6.4501 26 1 3.7013 -1.3657 6.5219 27 1 2.6692 0.6157 7.4659 28 1 1.2879 -1.2308 6.7166 29 1 -0.3633 0.4521 0.9228 30 1 -0.3633 0.5732 -0.8530 31 1 -0.3633 -1.0252 -0.0699 32 1 2.1560 -0.1720 -2.0836 33 1 1.4524 -1.6704 -1.4043 34 1 6.9345 -2.0823 -2.8222 35 1 8.4420 -3.1167 2.1715 36 1 9.6081 -3.3371 0.8447 37 1 8.9373 -0.4561 1.6187 38 1 11.5263 -2.0252 0.7996 39 1 11.3900 -0.1996 1.0247 40 1 10.6994 -0.5490 3.4410 41 1 10.8351 -2.3745 3.2164 42 1 4.2426 -0.5997 1.0600 43 1 3.6650 -2.2894 1.0401 44 1 2.2700 1.0132 2.2783 45 1 2.5898 2.1785 5.3875 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054926197.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:43 Heat of formation + Delta-G solvation = 27.984483 kcal Electronic energy + Delta-G solvation = -26402.044188 eV Core-core repulsion = 22739.556823 eV Total energy + Delta-G solvation = -3662.487365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.44573 -40.68277 -38.95470 -38.31782 -35.88930 -34.14146 -32.92981 -32.44021 -30.01919 -29.22136 -27.51251 -26.00068 -25.40961 -23.37576 -23.21927 -22.29895 -21.75399 -21.42652 -19.82966 -19.48117 -19.06373 -17.84184 -17.40921 -17.16126 -16.53623 -16.43155 -15.96274 -15.73690 -15.52128 -15.32111 -14.83082 -14.74251 -14.60215 -14.37020 -14.16500 -13.86685 -13.66332 -13.43730 -13.05762 -12.90195 -12.78764 -12.58509 -12.54917 -12.34234 -12.27568 -12.19521 -12.03458 -11.70436 -11.54224 -11.41329 -11.29149 -10.94989 -10.91521 -10.61983 -10.55524 -10.14954 -9.66936 -9.06097 -7.91772 -5.22090 -0.85721 0.12574 0.55987 1.29240 1.53254 1.54070 1.59999 1.77529 2.01579 2.58937 2.84009 2.97521 3.29203 3.38810 3.71183 3.76952 3.78279 3.82167 3.85066 4.00749 4.12775 4.15919 4.19809 4.26151 4.41452 4.47998 4.55577 4.63171 4.64373 4.70772 4.80344 4.82128 4.83674 4.99232 5.04694 5.06201 5.09436 5.14637 5.24643 5.27929 5.31652 5.47966 5.57757 6.23562 6.28495 6.52593 6.83623 7.36631 8.05870 8.30805 9.30706 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.007983 B = 0.004534 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3506.594489 B = 6174.738547 C = 9215.016774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 H 0.073 0.927 4 C 0.118 3.882 5 N -0.608 5.608 6 C 0.606 3.394 7 O -0.567 6.567 8 C -0.321 4.321 9 C 0.119 3.881 10 N -0.494 5.494 11 C 0.049 3.951 12 C -0.014 4.014 13 C -0.168 4.168 14 C -0.172 4.172 15 C -0.163 4.163 16 S 0.218 5.782 17 C 0.071 3.929 18 C 0.178 3.822 19 H 0.076 0.924 20 N -0.719 5.719 21 C -0.242 4.242 22 H 0.082 0.918 23 C -0.063 4.063 24 N -0.966 5.966 25 Si 0.963 3.037 26 H -0.275 1.275 27 H -0.301 1.301 28 H -0.279 1.279 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.192 0.808 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.113 0.887 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.376 0.624 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.595 -8.426 -7.285 14.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.123 4.123 3 H 0.091 0.909 4 C -0.004 4.004 5 N -0.340 5.340 6 C 0.395 3.605 7 O -0.449 6.449 8 C -0.445 4.445 9 C -0.040 4.040 10 N -0.208 5.208 11 C -0.225 4.225 12 C -0.055 4.055 13 C -0.188 4.188 14 C -0.209 4.209 15 C -0.200 4.200 16 S 0.477 5.523 17 C -0.057 4.057 18 C 0.067 3.933 19 H 0.094 0.906 20 N -0.358 5.358 21 C -0.374 4.374 22 H 0.100 0.900 23 C -0.256 4.256 24 N -0.615 5.615 25 Si 0.792 3.208 26 H -0.201 1.201 27 H -0.228 1.228 28 H -0.205 1.205 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.209 0.791 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.107 0.893 38 H 0.124 0.876 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.131 0.869 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.209 0.791 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 9.526 -8.601 -6.987 14.613 hybrid contribution 0.144 0.506 -0.035 0.527 sum 9.670 -8.095 -7.022 14.434 Atomic orbital electron populations 1.21566 0.91876 1.02861 1.02185 1.22555 0.97841 0.98792 0.93139 0.90851 1.22416 0.81417 0.98953 0.97584 1.48384 1.12703 1.65342 1.07576 1.16550 0.82113 0.76746 0.85100 1.90776 1.83758 1.55700 1.14633 1.25670 0.99926 1.20931 0.97949 1.22289 0.84987 0.94596 1.02148 1.66329 1.31606 1.18549 1.04338 1.28182 1.00430 0.98933 0.94937 1.20053 0.93333 0.97288 0.94801 1.22134 0.92450 0.97697 1.06567 1.23130 0.95569 1.03612 0.98616 1.23113 1.00968 1.04427 0.91522 1.84893 1.03741 1.60622 1.03033 1.23282 1.02804 1.01546 0.78021 1.21379 0.91420 0.94006 0.86542 0.90631 1.42464 1.86937 1.05202 1.01156 1.19564 1.41030 0.92336 0.84437 0.90047 1.25441 1.03303 0.95673 1.01202 1.69794 1.58542 1.03564 1.29645 0.85374 0.78322 0.76911 0.80145 1.20079 1.22766 1.20487 0.93180 0.90832 0.91261 0.90192 0.89376 0.79083 0.87273 0.87214 0.89324 0.87587 0.88883 0.88307 0.86892 0.91599 0.90972 0.79116 0.94069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 9.31 71.98 0.67 -2.47 16 2 C -0.10 -3.00 3.25 -9.40 -0.03 -3.03 16 3 H 0.07 2.32 8.00 -2.39 -0.02 2.31 16 4 C 0.12 3.24 6.36 86.85 0.55 3.79 16 5 N -0.61 -19.23 3.33 -816.47 -2.72 -21.95 16 6 C 0.61 20.51 7.81 86.45 0.68 21.19 16 7 O -0.57 -21.49 17.17 -4.31 -0.07 -21.56 16 8 C -0.32 -9.82 6.40 23.88 0.15 -9.67 16 9 C 0.12 3.41 11.10 84.23 0.93 4.34 16 10 N -0.49 -13.57 10.51 -190.30 -2.00 -15.57 16 11 C 0.05 1.20 6.59 88.46 0.58 1.78 16 12 C -0.01 -0.26 6.07 29.85 0.18 -0.08 16 13 C -0.17 -3.16 5.72 -10.79 -0.06 -3.22 16 14 C -0.17 -2.73 10.18 30.63 0.31 -2.42 16 15 C -0.16 -2.41 10.26 30.62 0.31 -2.09 16 16 S 0.22 5.93 18.68 -56.49 -1.06 4.88 16 17 C 0.07 2.32 4.95 86.73 0.43 2.75 16 18 C 0.18 6.14 3.06 46.18 0.14 6.28 16 19 H 0.08 2.55 8.02 -2.39 -0.02 2.53 16 20 N -0.72 -32.09 5.18 -317.33 -1.64 -33.74 16 21 C -0.24 -12.00 9.98 84.03 0.84 -11.16 16 22 H 0.08 3.82 7.83 -2.91 -0.02 3.79 16 23 C -0.06 -3.33 5.50 84.86 0.47 -2.87 16 24 N -0.97 -55.21 13.06 21.65 0.28 -54.93 16 25 Si 0.96 42.67 29.55 68.60 2.03 44.70 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 28 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.51 8.07 -2.39 -0.02 1.49 16 32 H 0.08 2.16 8.09 -2.39 -0.02 2.14 16 33 H 0.09 2.13 7.99 -2.38 -0.02 2.11 16 34 H 0.19 4.98 8.06 -2.91 -0.02 4.96 16 35 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.11 1.71 7.88 -2.39 -0.02 1.70 16 37 H 0.09 1.99 8.07 -2.39 -0.02 1.97 16 38 H 0.11 1.48 8.03 -2.39 -0.02 1.46 16 39 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 40 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.07 2.40 6.58 -2.38 -0.02 2.39 16 43 H 0.07 2.26 7.21 -2.39 -0.02 2.24 16 44 H 0.38 18.47 7.71 -92.71 -0.72 17.75 16 45 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -62.67 384.02 1.27 -61.40 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: 0.29 Total: 33.65 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 6.16 Total: 3.12 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -6.08 Total: -126.18 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.07 Total: -21.56 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: 5.93 SS G_CDS: -1.06 Total: 4.88 kcal Total: -62.67 1.27 -61.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054926197.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.383 kcal (2) G-P(sol) polarization free energy of solvation -62.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds