Wall clock time and date at job start Tue Mar 31 2020 19:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.58577 * 2 1 4 4 C 1.53189 * 109.58457 * 120.27920 * 2 1 3 5 5 C 1.53042 * 109.31344 * 174.56631 * 4 2 1 6 6 C 1.53043 * 109.53546 * 298.63720 * 5 4 2 7 7 H 1.09006 * 109.49906 * 181.34619 * 6 5 4 8 8 N 1.46498 * 109.50082 * 301.40768 * 6 5 4 9 9 C 1.34771 * 120.00294 * 204.99963 * 8 6 5 10 10 O 1.21615 * 120.00087 * 0.02562 * 9 8 6 11 11 C 1.47263 * 119.99630 * 180.02562 * 9 8 6 12 12 N 1.29773 * 125.52129 * 180.02562 * 11 9 8 13 13 C 1.32588 * 116.74985 * 179.97438 * 12 11 9 14 14 C 1.34892 * 114.27342 * 359.90941 * 13 12 11 15 15 S 1.71437 * 109.56495 * 0.12384 * 14 13 12 16 16 C 1.51936 * 110.54046 * 180.02562 * 14 13 12 17 17 C 1.54244 * 104.94049 * 17.45460 * 16 14 13 18 18 C 1.52804 * 136.15308 * 179.97438 * 13 12 11 19 19 C 1.53194 * 109.31465 * 61.36649 * 6 5 4 20 20 N 1.46928 * 109.70436 * 239.64438 * 2 1 3 21 21 C 1.36930 * 120.63126 * 6.55142 * 20 2 1 22 22 H 1.07999 * 120.00275 * 330.20960 * 21 20 2 23 23 C 1.38816 * 119.99695 * 150.21035 * 21 20 2 24 24 N 1.31618 * 119.99926 * 344.45817 * 23 21 20 25 25 Si 1.86802 * 119.99812 * 164.46485 * 23 21 20 26 26 H 1.48496 * 109.47548 * 59.99687 * 25 23 21 27 27 H 1.48499 * 109.46890 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47180 * 299.99682 * 25 23 21 29 29 H 1.08996 * 109.47227 * 299.72210 * 1 2 3 30 30 H 1.09001 * 109.46815 * 59.72147 * 1 2 3 31 31 H 1.09002 * 109.47419 * 179.71586 * 1 2 3 32 32 H 1.09000 * 109.49584 * 54.61881 * 4 2 1 33 33 H 1.08996 * 109.52682 * 294.53494 * 4 2 1 34 34 H 1.08997 * 109.46537 * 178.61715 * 5 4 2 35 35 H 1.09002 * 109.46124 * 58.65429 * 5 4 2 36 36 H 0.97007 * 119.99710 * 25.00744 * 8 6 5 37 37 H 1.08998 * 110.36443 * 258.55720 * 16 14 13 38 38 H 1.08999 * 110.36530 * 136.34800 * 16 14 13 39 39 H 1.08996 * 110.94996 * 91.55984 * 17 16 14 40 40 H 1.08999 * 110.94743 * 215.24400 * 17 16 14 41 41 H 1.08995 * 110.31291 * 43.52608 * 18 13 12 42 42 H 1.09001 * 110.31072 * 281.34655 * 18 13 12 43 43 H 1.08999 * 109.58567 * 65.14884 * 19 6 5 44 44 H 1.09002 * 109.58877 * 185.57931 * 19 6 5 45 45 H 0.97000 * 119.99301 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5678 -0.8433 1.1730 6 6 3.9603 -1.6608 -0.0598 7 1 5.0449 -1.7630 -0.0983 8 7 3.3466 -2.9887 0.0184 9 6 3.9061 -4.0289 -0.6309 10 8 4.9206 -3.8652 -1.2812 11 6 3.2887 -5.3636 -0.5527 12 7 3.7347 -6.4357 -1.1321 13 6 3.0399 -7.5491 -0.9436 14 6 1.9522 -7.3979 -0.1601 15 16 1.8287 -5.7633 0.3416 16 6 1.2221 -8.7208 -0.0007 17 6 2.2462 -9.7937 -0.4240 18 6 3.1491 -9.0056 -1.3924 19 6 3.4686 -0.9436 -1.3210 20 7 2.0254 -0.6990 -1.1936 21 6 1.1586 -1.1144 -2.1689 22 1 0.1446 -1.3826 -1.9117 23 6 1.5834 -1.1908 -3.4883 24 7 2.6935 -0.5882 -3.8581 25 14 0.5792 -2.1487 -4.7387 26 1 -0.7822 -1.5633 -4.8334 27 1 1.2420 -2.0764 -6.0656 28 1 0.4794 -3.5674 -4.3113 29 1 -0.3633 0.5095 0.8924 30 1 -0.3633 0.5182 -0.8875 31 1 -0.3634 -1.0276 -0.0051 32 1 1.6049 -1.7245 1.2922 33 1 1.7637 -0.1658 2.1375 34 1 3.9381 -1.3389 2.0704 35 1 4.0045 0.1529 1.1023 36 1 2.5375 -3.1194 0.5373 37 1 0.3484 -8.7526 -0.6515 38 1 0.9261 -8.8679 1.0380 39 1 2.8147 -10.1502 0.4349 40 1 1.7544 -10.6219 -0.9344 41 1 4.1803 -9.3495 -1.3137 42 1 2.7902 -9.1141 -2.4159 43 1 3.9921 0.0064 -1.4287 44 1 3.6576 -1.5684 -2.1939 45 1 2.9904 -0.6419 -4.7800 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071682066.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:44 Heat of formation + Delta-G solvation = 11.763761 kcal Electronic energy + Delta-G solvation = -27579.746966 eV Core-core repulsion = 23916.556218 eV Total energy + Delta-G solvation = -3663.190748 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.61506 -40.87350 -39.17938 -36.86091 -35.89048 -34.55002 -32.50197 -31.76605 -29.76491 -29.44986 -27.91239 -26.95939 -25.98272 -23.91670 -23.07091 -22.18808 -21.87286 -20.56818 -20.06044 -19.42909 -18.30090 -18.12099 -17.16991 -17.04214 -16.55600 -16.20888 -15.88776 -15.58875 -15.20825 -15.08524 -14.91149 -14.64671 -14.42562 -14.28108 -14.03556 -13.79836 -13.67677 -13.06537 -13.01558 -12.89465 -12.64386 -12.58707 -12.42889 -12.35957 -12.16911 -12.15023 -12.09687 -11.91688 -11.58618 -11.55303 -11.22496 -11.07107 -10.70241 -10.53758 -10.52852 -10.18849 -9.62284 -8.58302 -7.84321 -5.28860 -0.84223 -0.04327 0.54176 1.17088 1.35496 1.39777 1.43917 1.73964 2.12341 2.47229 2.97877 3.32160 3.43872 3.60424 3.63681 3.94860 4.00887 4.09110 4.12312 4.18335 4.36966 4.46719 4.49617 4.63808 4.70817 4.74167 4.79239 4.79823 4.85330 4.95169 5.02060 5.06527 5.06888 5.12745 5.14947 5.26789 5.28182 5.31489 5.52209 5.59636 5.62606 5.71907 5.72785 6.25919 6.42984 6.59486 7.04339 7.17347 7.92114 8.42627 9.20944 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011678 B = 0.004477 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.042147 B = 6252.440118 C = 7087.162346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.154 3.846 3 H 0.017 0.983 4 C -0.122 4.122 5 C -0.111 4.111 6 C 0.127 3.873 7 H 0.072 0.928 8 N -0.675 5.675 9 C 0.588 3.412 10 O -0.560 6.560 11 C -0.034 4.034 12 N -0.439 5.439 13 C -0.003 4.003 14 C -0.250 4.250 15 S 0.255 5.745 16 C -0.038 4.038 17 C -0.101 4.101 18 C -0.044 4.044 19 C 0.171 3.829 20 N -0.595 5.595 21 C -0.235 4.235 22 H 0.078 0.922 23 C -0.053 4.053 24 N -0.935 5.935 25 Si 0.942 3.058 26 H -0.264 1.264 27 H -0.304 1.304 28 H -0.290 1.290 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.406 0.594 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.005 0.995 44 H 0.043 0.957 45 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.134 -15.101 16.663 23.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.035 0.965 4 C -0.161 4.161 5 C -0.148 4.148 6 C 0.021 3.979 7 H 0.090 0.910 8 N -0.327 5.327 9 C 0.370 3.630 10 O -0.438 6.438 11 C -0.310 4.310 12 N -0.155 5.155 13 C -0.139 4.139 14 C -0.373 4.373 15 S 0.512 5.488 16 C -0.077 4.077 17 C -0.140 4.140 18 C -0.084 4.084 19 C 0.043 3.957 20 N -0.319 5.319 21 C -0.366 4.366 22 H 0.096 0.904 23 C -0.248 4.248 24 N -0.581 5.581 25 Si 0.772 3.228 26 H -0.190 1.190 27 H -0.231 1.231 28 H -0.217 1.217 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.243 0.757 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.109 0.891 40 H 0.137 0.863 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.023 0.977 44 H 0.061 0.939 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -5.581 -14.197 16.380 22.383 hybrid contribution 0.188 -0.642 -2.074 2.179 sum -5.393 -14.839 14.306 21.306 Atomic orbital electron populations 1.21731 0.94600 1.01413 1.00906 1.20792 0.94251 0.93339 0.86775 0.96480 1.21998 0.94593 1.01069 0.98425 1.21704 0.97481 1.00102 0.95554 1.21698 0.96669 0.81040 0.98466 0.90996 1.45515 1.29246 1.07737 1.50219 1.17034 0.83618 0.82684 0.79618 1.90777 1.26418 1.84533 1.42097 1.26876 1.00694 0.96954 1.06445 1.65653 1.31991 0.98618 1.19276 1.22630 0.93349 0.96610 1.01304 1.27629 1.03123 1.02307 1.04259 1.83099 1.22464 0.99276 1.43995 1.21025 0.97877 0.84066 1.04742 1.22381 0.95561 0.96924 0.99153 1.21129 1.02741 0.83491 1.01003 1.20849 0.84491 0.95536 0.94791 1.44261 1.02054 1.65567 1.20038 1.19366 0.95491 1.35528 0.86230 0.90431 1.25706 0.98915 1.01176 0.98986 1.70135 1.25885 1.45881 1.16245 0.85704 0.79199 0.79044 0.78845 1.18953 1.23083 1.21652 0.90386 0.94700 0.92945 0.92098 0.88531 0.89220 0.90071 0.75706 0.87741 0.87470 0.89116 0.86332 0.89780 0.89181 0.97686 0.93866 0.94911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 7.96 71.98 0.57 -3.63 16 2 C 0.15 5.62 3.49 44.97 0.16 5.77 16 3 H 0.02 0.67 8.14 -2.39 -0.02 0.66 16 4 C -0.12 -3.28 5.21 30.67 0.16 -3.12 16 5 C -0.11 -3.09 5.59 30.62 0.17 -2.92 16 6 C 0.13 4.88 2.81 45.07 0.13 5.01 16 7 H 0.07 2.90 7.58 -2.38 -0.02 2.88 16 8 N -0.68 -25.21 4.91 -445.59 -2.19 -27.40 16 9 C 0.59 25.70 7.78 86.62 0.67 26.38 16 10 O -0.56 -29.61 16.73 -4.08 -0.07 -29.68 16 11 C -0.03 -1.32 7.44 87.37 0.65 -0.67 16 12 N -0.44 -17.42 10.58 -175.18 -1.85 -19.28 16 13 C 0.00 -0.09 7.63 42.36 0.32 0.24 16 14 C -0.25 -5.95 7.18 25.31 0.18 -5.76 16 15 S 0.25 6.68 22.29 -56.49 -1.26 5.43 16 16 C -0.04 -0.48 6.79 30.67 0.21 -0.28 16 17 C -0.10 -1.04 7.11 31.38 0.22 -0.82 16 18 C -0.04 -0.85 6.80 30.90 0.21 -0.64 16 19 C 0.17 8.48 4.88 86.36 0.42 8.91 16 20 N -0.60 -28.32 2.90 -675.22 -1.96 -30.28 16 21 C -0.24 -12.54 8.59 84.04 0.72 -11.82 16 22 H 0.08 3.92 6.24 -2.91 -0.02 3.90 16 23 C -0.05 -3.06 4.94 84.86 0.42 -2.64 16 24 N -0.93 -58.64 11.23 21.65 0.24 -58.40 16 25 Si 0.94 47.49 29.58 68.60 2.03 49.52 16 26 H -0.26 -12.37 7.11 99.48 0.71 -11.67 16 27 H -0.30 -15.88 7.11 99.48 0.71 -15.17 16 28 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 29 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.03 1.30 7.67 -2.39 -0.02 1.28 16 31 H 0.05 1.69 7.41 -2.39 -0.02 1.67 16 32 H 0.06 1.58 6.40 -2.39 -0.02 1.56 16 33 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.41 12.78 5.91 -92.70 -0.55 12.24 16 37 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 44 H 0.04 2.62 6.14 -2.39 -0.01 2.61 16 45 H 0.24 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -81.58 367.10 0.63 -80.96 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.47 Total: 15.13 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: 5.22 Total: 14.01 kcal Atomic # 7 Polarization: -129.60 SS G_CDS: -5.76 Total: -135.36 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.07 Total: -29.68 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Atomic # 16 Polarization: 6.68 SS G_CDS: -1.26 Total: 5.43 kcal Total: -81.58 0.63 -80.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071682066.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.719 kcal (2) G-P(sol) polarization free energy of solvation -81.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds