Wall clock time and date at job start Tue Mar 31 2020 19:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.58945 * 2 1 4 4 C 1.53190 * 109.58445 * 120.28886 * 2 1 3 5 5 C 1.53046 * 109.31079 * 174.56015 * 4 2 1 6 6 C 1.53039 * 109.53926 * 298.63584 * 5 4 2 7 7 H 1.09001 * 109.49255 * 301.37627 * 6 5 4 8 8 N 1.46499 * 109.49661 * 181.31967 * 6 5 4 9 9 C 1.34775 * 120.00134 * 154.99866 * 8 6 5 10 10 O 1.21630 * 119.99821 * 359.97438 * 9 8 6 11 11 C 1.47260 * 120.00166 * 179.97438 * 9 8 6 12 12 N 1.33562 * 123.14126 * 0.02842 * 11 9 8 13 13 C 1.28656 * 115.76643 * 179.97438 * 12 11 9 14 14 S 1.70769 * 110.56013 * 359.97438 * 13 12 11 15 15 C 1.35214 * 123.14338 * 179.73087 * 11 9 8 16 16 C 1.50689 * 125.58478 * 0.02562 * 15 11 9 17 17 C 1.53005 * 117.50103 * 188.62297 * 16 15 11 18 18 C 1.53003 * 60.00011 * 252.51003 * 17 16 15 19 19 C 1.53190 * 109.31638 * 61.36281 * 6 5 4 20 20 N 1.46931 * 109.69747 * 239.64345 * 2 1 3 21 21 C 1.36929 * 120.63747 * 6.56208 * 20 2 1 22 22 H 1.08002 * 119.99797 * 330.19575 * 21 20 2 23 23 C 1.38813 * 120.00555 * 150.19664 * 21 20 2 24 24 N 1.31615 * 119.99584 * 344.45494 * 23 21 20 25 25 Si 1.86797 * 120.00188 * 164.46012 * 23 21 20 26 26 H 1.48496 * 109.46928 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47242 * 119.99777 * 25 23 21 28 28 H 1.48505 * 109.46683 * 240.00012 * 25 23 21 29 29 H 1.09002 * 109.46654 * 299.99707 * 1 2 3 30 30 H 1.09003 * 109.46759 * 59.99594 * 1 2 3 31 31 H 1.08993 * 109.47594 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.49706 * 294.51077 * 4 2 1 33 33 H 1.09003 * 109.50106 * 54.60975 * 4 2 1 34 34 H 1.08997 * 109.45755 * 58.65550 * 5 4 2 35 35 H 1.08996 * 109.45881 * 178.62561 * 5 4 2 36 36 H 0.97002 * 119.99999 * 334.99067 * 8 6 5 37 37 H 1.07997 * 124.71469 * 179.97438 * 13 12 11 38 38 H 1.09005 * 115.55268 * 334.33267 * 16 15 11 39 39 H 1.08998 * 117.49575 * 0.02562 * 17 16 15 40 40 H 1.08998 * 117.49708 * 145.02062 * 17 16 15 41 41 H 1.09002 * 117.50104 * 252.51155 * 18 17 16 42 42 H 1.08997 * 117.49962 * 107.48574 * 18 17 16 43 43 H 1.09001 * 109.58547 * 65.15358 * 19 6 5 44 44 H 1.08997 * 109.58832 * 185.43604 * 19 6 5 45 45 H 0.97000 * 119.99726 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7279 1.2463 5 6 3.5678 -0.8436 1.1728 6 6 3.9603 -1.6609 -0.0601 7 1 3.5040 -2.6492 -0.0017 8 7 5.4179 -1.7978 -0.1123 9 6 5.9742 -2.8397 -0.7614 10 8 5.2659 -3.6667 -1.3035 11 6 7.4394 -2.9770 -0.8144 12 7 8.2755 -2.1071 -0.2415 13 6 9.5288 -2.3648 -0.3754 14 16 9.7536 -3.7961 -1.2792 15 6 8.0640 -3.9985 -1.4426 16 6 7.3824 -5.1288 -2.1696 17 6 8.2553 -6.2934 -2.6417 18 6 7.6910 -5.2991 -3.6585 19 6 3.4685 -0.9437 -1.3212 20 7 2.0253 -0.6991 -1.1937 21 6 1.1585 -1.1143 -2.1690 22 1 0.1445 -1.3826 -1.9118 23 6 1.5831 -1.1905 -3.4884 24 7 2.6931 -0.5878 -3.8583 25 14 0.5789 -2.1482 -4.7389 26 1 -0.6158 -2.7283 -4.0747 27 1 0.1464 -1.2371 -5.8289 28 1 1.4083 -3.2412 -5.3071 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7639 -0.1656 2.1371 33 1 1.6048 -1.7247 1.2921 34 1 4.0045 0.1526 1.1021 35 1 3.9380 -1.3395 2.0700 36 1 5.9828 -1.1383 0.3202 37 1 10.3276 -1.7599 0.0277 38 1 6.3710 -5.3606 -1.8356 39 1 9.3225 -6.2422 -2.4259 40 1 7.8183 -7.2917 -2.6180 41 1 6.8828 -5.6433 -4.3039 42 1 8.3871 -4.5935 -4.1121 43 1 3.9920 0.0063 -1.4289 44 1 3.6598 -1.5673 -2.1944 45 1 2.9900 -0.6413 -4.7802 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071821556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:15 Heat of formation + Delta-G solvation = 31.042549 kcal Electronic energy + Delta-G solvation = -27266.397714 eV Core-core repulsion = 23604.042957 eV Total energy + Delta-G solvation = -3662.354757 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.68402 -40.14892 -38.98843 -38.24131 -36.02124 -34.67481 -32.38611 -31.80226 -31.37763 -28.08350 -27.29077 -26.28782 -24.20130 -23.69280 -23.35179 -23.05800 -22.00951 -21.24510 -20.51718 -19.18341 -18.35423 -17.97418 -17.16805 -17.00475 -16.65181 -16.27312 -15.78030 -15.70199 -15.38996 -15.15278 -15.10859 -14.95678 -14.76932 -14.41329 -14.15129 -13.55142 -13.19489 -13.07601 -13.04950 -12.78175 -12.73788 -12.58090 -12.57355 -12.30531 -12.13341 -12.11506 -12.00470 -11.76658 -11.64462 -11.41001 -11.17523 -10.93213 -10.73142 -10.57116 -10.26423 -10.18530 -9.80007 -8.64495 -7.86849 -5.33919 -0.53690 0.19765 0.59671 0.96174 1.38793 1.42677 1.51458 2.17356 2.31675 2.49415 2.84707 3.12038 3.29990 3.42191 3.65449 3.74666 3.89814 3.96866 4.05726 4.08188 4.14899 4.23288 4.36234 4.52790 4.57167 4.61718 4.68687 4.76536 4.84136 4.86596 4.90631 4.98836 5.03987 5.09316 5.10326 5.16495 5.27308 5.30170 5.44937 5.53511 5.58898 5.68922 5.75884 6.29053 6.40467 6.65119 7.12745 7.21960 7.87256 8.38039 9.18766 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012407 B = 0.003874 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.233633 B = 7226.419121 C = 8815.314099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.020 0.980 4 C -0.116 4.116 5 C -0.108 4.108 6 C 0.132 3.868 7 H 0.055 0.945 8 N -0.696 5.696 9 C 0.580 3.420 10 O -0.567 6.567 11 C -0.028 4.028 12 N -0.463 5.463 13 C -0.006 4.006 14 S 0.286 5.714 15 C -0.168 4.168 16 C -0.120 4.120 17 C -0.142 4.142 18 C -0.166 4.166 19 C 0.185 3.815 20 N -0.602 5.602 21 C -0.251 4.251 22 H 0.077 0.923 23 C -0.054 4.054 24 N -0.935 5.935 25 Si 0.957 3.043 26 H -0.261 1.261 27 H -0.288 1.288 28 H -0.300 1.300 29 H 0.080 0.920 30 H 0.038 0.962 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.412 0.588 37 H 0.247 0.753 38 H 0.111 0.889 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.098 0.902 42 H 0.104 0.896 43 H -0.008 1.008 44 H 0.041 0.959 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.439 -6.300 10.220 21.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.038 0.962 4 C -0.155 4.155 5 C -0.146 4.146 6 C 0.025 3.975 7 H 0.073 0.927 8 N -0.346 5.346 9 C 0.365 3.635 10 O -0.447 6.447 11 C -0.162 4.162 12 N -0.177 5.177 13 C -0.305 4.305 14 S 0.543 5.457 15 C -0.292 4.292 16 C -0.141 4.141 17 C -0.180 4.180 18 C -0.204 4.204 19 C 0.057 3.943 20 N -0.326 5.326 21 C -0.381 4.381 22 H 0.094 0.906 23 C -0.249 4.249 24 N -0.582 5.582 25 Si 0.786 3.214 26 H -0.185 1.185 27 H -0.214 1.214 28 H -0.228 1.228 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.249 0.751 37 H 0.263 0.737 38 H 0.129 0.871 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.116 0.884 42 H 0.122 0.878 43 H 0.010 0.990 44 H 0.060 0.940 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 17.662 -6.853 9.730 21.298 hybrid contribution -1.380 0.315 -1.051 1.763 sum 16.282 -6.538 8.679 19.575 Atomic orbital electron populations 1.21723 0.94479 1.01231 1.01129 1.20815 0.94452 0.93293 0.86680 0.96228 1.21950 0.94099 1.01044 0.98444 1.21648 0.97403 0.99786 0.95728 1.21592 0.78615 0.99342 0.97905 0.92663 1.45778 1.07804 1.26445 1.54540 1.17577 0.86251 0.81538 0.78120 1.90754 1.63167 1.43692 1.47092 1.20135 0.94592 0.95534 1.05959 1.66925 1.03125 1.27572 1.20118 1.29074 0.96867 1.01474 1.03048 1.82238 0.97213 1.20352 1.45873 1.25076 1.01010 1.00183 1.02965 1.20587 1.00545 0.95466 0.97453 1.23277 0.99591 0.94525 1.00570 1.23139 1.03781 1.03116 0.90356 1.20683 0.83876 0.94972 0.94727 1.44324 1.02339 1.65657 1.20324 1.19531 0.95580 1.36421 0.86563 0.90578 1.25840 0.99091 1.00887 0.99061 1.70191 1.25982 1.45680 1.16314 0.85342 0.78569 0.78076 0.79412 1.18480 1.21443 1.22770 0.90158 0.94279 0.93439 0.88431 0.92687 0.91199 0.89872 0.75127 0.73682 0.87066 0.86336 0.86343 0.88398 0.87797 0.98981 0.94027 0.94715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 7.96 71.98 0.57 -4.17 16 2 C 0.15 6.34 3.49 44.97 0.16 6.49 16 3 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.12 -3.83 5.37 30.67 0.16 -3.66 16 5 C -0.11 -3.54 5.35 30.62 0.16 -3.37 16 6 C 0.13 5.61 2.60 45.07 0.12 5.73 16 7 H 0.06 2.66 7.58 -2.39 -0.02 2.64 16 8 N -0.70 -26.93 5.08 -445.59 -2.26 -29.19 16 9 C 0.58 24.19 7.76 86.62 0.67 24.86 16 10 O -0.57 -27.93 13.82 -4.13 -0.06 -27.99 16 11 C -0.03 -0.95 6.70 40.56 0.27 -0.67 16 12 N -0.46 -12.63 10.12 -193.02 -1.95 -14.58 16 13 C -0.01 -0.10 12.17 130.71 1.59 1.49 16 14 S 0.29 4.53 21.77 -56.49 -1.23 3.30 16 15 C -0.17 -4.69 6.04 24.98 0.15 -4.54 16 16 C -0.12 -3.45 5.40 -11.54 -0.06 -3.52 16 17 C -0.14 -2.67 10.03 30.60 0.31 -2.36 16 18 C -0.17 -4.03 10.23 30.60 0.31 -3.72 16 19 C 0.18 9.84 4.86 86.36 0.42 10.26 16 20 N -0.60 -31.78 2.99 -675.20 -2.02 -33.79 16 21 C -0.25 -14.43 8.58 84.04 0.72 -13.71 16 22 H 0.08 4.20 6.24 -2.91 -0.02 4.18 16 23 C -0.05 -3.23 4.94 84.86 0.42 -2.81 16 24 N -0.94 -59.88 11.23 21.65 0.24 -59.63 16 25 Si 0.96 48.45 29.58 68.60 2.03 50.48 16 26 H -0.26 -12.34 7.11 99.48 0.71 -11.63 16 27 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 28 H -0.30 -15.60 7.11 99.48 0.71 -14.89 16 29 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.04 1.59 7.66 -2.39 -0.02 1.57 16 31 H 0.05 1.79 7.42 -2.39 -0.02 1.78 16 32 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.41 13.76 8.12 -92.71 -0.75 13.00 16 37 H 0.25 1.79 8.06 -2.91 -0.02 1.77 16 38 H 0.11 4.07 6.17 -2.38 -0.01 4.05 16 39 H 0.12 1.60 7.28 -2.39 -0.02 1.59 16 40 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 43 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 44 H 0.04 2.64 6.15 -2.39 -0.01 2.62 16 45 H 0.24 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -80.47 371.82 0.99 -79.47 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.26 Total: 25.64 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 5.98 Total: 6.30 kcal Atomic # 7 Polarization: -131.22 SS G_CDS: -5.99 Total: -137.21 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.06 Total: -27.99 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.03 Total: 50.48 kcal Atomic # 16 Polarization: 4.53 SS G_CDS: -1.23 Total: 3.30 kcal Total: -80.47 0.99 -79.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071821556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.514 kcal (2) G-P(sol) polarization free energy of solvation -80.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds