Wall clock time and date at job start Tue Mar 31 2020 19:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.69646 * 2 1 4 4 C 1.53190 * 109.58687 * 239.64355 * 2 1 3 5 5 C 1.53039 * 109.31353 * 185.57122 * 4 2 1 6 6 C 1.53038 * 109.52313 * 61.37531 * 5 4 2 7 7 H 1.09006 * 109.49978 * 178.67618 * 6 5 4 8 8 N 1.46500 * 109.50052 * 58.57983 * 6 5 4 9 9 C 1.34776 * 120.00379 * 155.00452 * 8 6 5 10 10 O 1.21631 * 120.00094 * 359.97438 * 9 8 6 11 11 C 1.47267 * 120.00017 * 180.02562 * 9 8 6 12 12 N 1.33560 * 123.14121 * 359.69682 * 11 9 8 13 13 C 1.28651 * 115.76304 * 179.83257 * 12 11 9 14 14 S 1.70768 * 110.56041 * 0.42305 * 13 12 11 15 15 C 1.35213 * 123.13978 * 179.97438 * 11 9 8 16 16 C 1.50700 * 125.58660 * 359.92655 * 15 11 9 17 17 C 1.52994 * 117.49840 * 188.61971 * 16 15 11 18 18 C 1.53001 * 60.00344 * 252.51130 * 17 16 15 19 19 C 1.53200 * 109.31284 * 298.61331 * 6 5 4 20 20 N 1.46923 * 108.76461 * 54.65809 * 19 6 5 21 21 C 1.36934 * 120.63159 * 126.40622 * 20 19 6 22 22 H 1.08001 * 119.99989 * 208.99273 * 21 20 19 23 23 C 1.38809 * 120.00026 * 28.99534 * 21 20 19 24 24 N 1.31618 * 120.00290 * 15.03279 * 23 21 20 25 25 Si 1.86802 * 120.00128 * 195.02764 * 23 21 20 26 26 H 1.48497 * 109.46839 * 60.00142 * 25 23 21 27 27 H 1.48500 * 109.47277 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47172 * 300.00420 * 25 23 21 29 29 H 1.09001 * 109.46765 * 180.36041 * 1 2 3 30 30 H 1.09004 * 109.47069 * 300.35083 * 1 2 3 31 31 H 1.08998 * 109.47725 * 60.35968 * 1 2 3 32 32 H 1.09004 * 109.49421 * 65.62573 * 4 2 1 33 33 H 1.08993 * 109.52469 * 305.54415 * 4 2 1 34 34 H 1.08994 * 109.45967 * 181.38679 * 5 4 2 35 35 H 1.08994 * 109.46525 * 301.36400 * 5 4 2 36 36 H 0.97006 * 119.99753 * 334.99559 * 8 6 5 37 37 H 1.08000 * 124.72020 * 180.19025 * 13 12 11 38 38 H 1.08999 * 115.54940 * 334.32988 * 16 15 11 39 39 H 1.08999 * 117.49636 * 359.97438 * 17 16 15 40 40 H 1.09000 * 117.50215 * 145.01967 * 17 16 15 41 41 H 1.08999 * 117.49786 * 252.51565 * 18 17 16 42 42 H 1.08994 * 117.51872 * 107.47900 * 18 17 16 43 43 H 1.09000 * 109.59717 * 294.86982 * 19 6 5 44 44 H 1.09004 * 109.58388 * 174.43513 * 19 6 5 45 45 H 0.96998 * 120.00359 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 3.5675 -0.8478 -1.1702 6 6 3.9567 -1.6657 0.0634 7 1 5.0410 -1.7698 0.1037 8 7 3.3401 -2.9924 -0.0150 9 6 3.8964 -4.0335 0.6354 10 8 4.9106 -3.8719 1.2871 11 6 3.2769 -5.3672 0.5561 12 7 2.1619 -5.6144 -0.1364 13 6 1.7464 -6.8317 -0.1114 14 16 2.7791 -7.7983 0.8454 15 6 3.7808 -6.4547 1.1820 16 6 5.0223 -6.4784 2.0358 17 6 5.5402 -7.8440 2.4915 18 6 4.8671 -6.9070 3.4964 19 6 3.4651 -0.9468 1.3237 20 7 2.0226 -0.6995 1.1945 21 6 1.1538 -1.1127 2.1690 22 1 0.1360 -1.3669 1.9126 23 6 1.5814 -1.2046 3.4864 24 7 2.7046 -0.6265 3.8557 25 14 0.5625 -2.1489 4.7353 26 1 0.4328 -3.5629 4.3007 27 1 1.2317 -2.0982 6.0600 28 1 -0.7866 -1.5369 4.8378 29 1 -0.3633 -1.0277 0.0065 30 1 -0.3633 0.5193 0.8869 31 1 -0.3634 0.5082 -0.8931 32 1 1.7660 -0.1668 -2.1368 33 1 1.6031 -1.7252 -1.2918 34 1 3.9378 -1.3447 -2.0669 35 1 4.0061 0.1474 -1.0991 36 1 2.5314 -3.1214 -0.5350 37 1 0.8648 -7.1914 -0.6212 38 1 5.7608 -5.7084 1.8130 39 1 4.9828 -8.7252 2.1741 40 1 6.6199 -7.9727 2.5685 41 1 5.5039 -6.4191 4.2344 42 1 3.8670 -7.1714 3.8398 43 1 3.9903 0.0022 1.4316 44 1 3.6519 -1.5716 2.1971 45 1 3.0032 -0.6904 4.7764 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071821557.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:19 Heat of formation + Delta-G solvation = 56.250481 kcal Electronic energy + Delta-G solvation = -28052.297100 eV Core-core repulsion = 24391.035440 eV Total energy + Delta-G solvation = -3661.261659 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.34359 -38.74179 -37.35655 -37.08987 -34.03847 -32.66798 -30.82377 -30.20558 -29.79039 -26.53406 -25.65147 -24.82704 -22.72377 -22.38245 -22.09687 -21.93696 -20.41012 -19.57883 -18.68647 -18.05031 -16.71830 -16.26719 -15.72577 -15.24658 -15.21690 -14.63064 -14.48542 -14.14411 -14.00983 -13.82490 -13.53053 -13.38435 -13.03403 -12.71881 -12.44338 -12.10962 -11.98834 -11.80031 -11.62203 -11.16936 -11.10855 -11.04049 -10.90474 -10.81723 -10.66044 -10.60020 -10.32988 -10.27632 -9.90341 -9.77768 -9.49860 -9.39584 -9.29626 -9.26771 -8.77064 -8.38606 -8.23435 -6.53333 -5.68474 -3.11695 0.58115 1.22328 1.63965 2.24356 3.41358 3.47648 3.48334 3.72090 3.78263 4.01739 4.26481 4.53265 4.55563 4.80239 4.96859 5.14945 5.29043 5.37596 5.42536 5.49264 5.52755 5.57936 5.60552 5.66897 5.84036 5.99724 6.03568 6.08025 6.18170 6.21252 6.28711 6.39319 6.41213 6.50600 6.58971 6.68159 6.76386 6.97528 7.10682 7.19845 7.42364 7.51331 7.76805 7.89838 8.23161 8.55773 8.83714 9.30281 9.94837 10.50715 11.39481 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010918 B = 0.004969 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.916022 B = 5634.057412 C = 6466.407586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.166 3.834 3 H 0.025 0.975 4 C -0.132 4.132 5 C -0.118 4.118 6 C 0.117 3.883 7 H 0.076 0.924 8 N -0.680 5.680 9 C 0.592 3.408 10 O -0.539 6.539 11 C 0.012 3.988 12 N -0.430 5.430 13 C -0.008 4.008 14 S 0.179 5.821 15 C -0.151 4.151 16 C -0.082 4.082 17 C -0.180 4.180 18 C -0.159 4.159 19 C 0.162 3.838 20 N -0.582 5.582 21 C -0.245 4.245 22 H 0.066 0.934 23 C 0.006 3.994 24 N -0.900 5.900 25 Si 0.895 3.105 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.284 1.284 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.404 0.596 37 H 0.202 0.798 38 H 0.150 0.850 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.025 0.975 44 H 0.098 0.902 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.821 -13.370 -9.116 16.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.060 3.940 3 H 0.042 0.958 4 C -0.171 4.171 5 C -0.156 4.156 6 C 0.011 3.989 7 H 0.094 0.906 8 N -0.329 5.329 9 C 0.375 3.625 10 O -0.417 6.417 11 C -0.122 4.122 12 N -0.144 5.144 13 C -0.308 4.308 14 S 0.435 5.565 15 C -0.274 4.274 16 C -0.103 4.103 17 C -0.218 4.218 18 C -0.197 4.197 19 C 0.035 3.965 20 N -0.305 5.305 21 C -0.375 4.375 22 H 0.084 0.916 23 C -0.193 4.193 24 N -0.545 5.545 25 Si 0.725 3.275 26 H -0.214 1.214 27 H -0.217 1.217 28 H -0.210 1.210 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.240 0.760 37 H 0.219 0.781 38 H 0.168 0.832 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.113 0.887 43 H 0.043 0.957 44 H 0.116 0.884 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.238 -13.804 -8.563 16.397 hybrid contribution -0.799 0.329 0.493 0.994 sum 1.440 -13.475 -8.070 15.772 Atomic orbital electron populations 1.21793 0.96166 1.01285 1.00054 1.20452 0.92867 0.93562 0.87163 0.95787 1.22076 0.95152 1.00847 0.99029 1.21681 0.97091 1.00055 0.96767 1.21847 0.96934 0.81718 0.98429 0.90589 1.45676 1.29219 1.07940 1.50053 1.16863 0.83643 0.82240 0.79723 1.90711 1.25139 1.84008 1.41875 1.20520 0.94186 0.96433 1.01085 1.66956 1.10581 1.18530 1.18312 1.28270 1.05545 0.92183 1.04764 1.82594 1.17454 1.12678 1.43801 1.24755 1.02292 0.96560 1.03813 1.20692 0.95143 0.99720 0.94711 1.23143 1.01347 0.92871 1.04405 1.23059 1.02482 1.02360 0.91788 1.21199 0.83754 0.97031 0.94471 1.44017 1.02699 1.64763 1.19011 1.19028 0.94564 1.37758 0.86151 0.91612 1.25011 0.97692 0.99713 0.96892 1.69966 1.23165 1.44505 1.16829 0.86485 0.79663 0.80274 0.81042 1.21375 1.21672 1.21008 0.92915 0.92124 0.94451 0.92896 0.92502 0.93059 0.91078 0.76002 0.78097 0.83249 0.88901 0.87783 0.87624 0.88711 0.95667 0.88403 0.93719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 7.94 37.16 0.30 -2.26 16 2 C 0.17 3.39 3.50 -67.60 -0.24 3.16 16 3 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.23 5.20 -26.61 -0.14 -2.37 16 5 C -0.12 -1.96 5.59 -26.69 -0.15 -2.11 16 6 C 0.12 2.32 2.81 -67.81 -0.19 2.13 16 7 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 8 N -0.68 -13.46 4.91 -54.81 -0.27 -13.73 16 9 C 0.59 12.25 7.76 -12.59 -0.10 12.16 16 10 O -0.54 -12.16 13.82 5.25 0.07 -12.08 16 11 C 0.01 0.22 6.70 -84.52 -0.57 -0.35 16 12 N -0.43 -7.01 10.12 -12.36 -0.13 -7.14 16 13 C -0.01 -0.10 12.17 51.43 0.63 0.53 16 14 S 0.18 2.00 21.76 -107.50 -2.34 -0.34 16 15 C -0.15 -2.34 6.04 -35.39 -0.21 -2.55 16 16 C -0.08 -1.21 5.40 -91.77 -0.50 -1.71 16 17 C -0.18 -1.96 10.03 -26.73 -0.27 -2.23 16 18 C -0.16 -2.07 10.23 -26.73 -0.27 -2.35 16 19 C 0.16 3.96 4.89 -3.71 -0.02 3.94 16 20 N -0.58 -14.25 2.91 -164.77 -0.48 -14.73 16 21 C -0.25 -6.67 8.61 -15.06 -0.13 -6.80 16 22 H 0.07 1.77 6.20 -52.49 -0.33 1.44 16 23 C 0.01 0.16 4.96 -17.43 -0.09 0.07 16 24 N -0.90 -26.83 11.14 55.49 0.62 -26.22 16 25 Si 0.89 22.66 29.58 -169.99 -5.03 17.63 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 28 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 29 H 0.05 1.01 7.40 -51.93 -0.38 0.63 16 30 H 0.06 1.24 7.66 -51.93 -0.40 0.84 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.99 6.40 -51.93 -0.33 0.65 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.40 7.70 6.29 -40.82 -0.26 7.44 16 37 H 0.20 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.15 2.51 6.17 -51.93 -0.32 2.19 16 39 H 0.09 0.88 7.28 -51.93 -0.38 0.51 16 40 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 42 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.10 2.81 6.06 -51.93 -0.31 2.50 16 45 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 368.10 15.07 5.55 5.55 Total: -1.00 -32.20 368.10 -10.41 -42.61 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -6.47 Total: 9.17 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -1.94 Total: -0.73 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: -0.26 Total: -61.81 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.07 Total: -12.08 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.03 Total: 17.63 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.34 Total: -0.34 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.20 -10.41 -42.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071821557.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.863 kcal (2) G-P(sol) polarization free energy of solvation -32.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds